View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9428_low_13 (Length: 360)
Name: NF9428_low_13
Description: NF9428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9428_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 30 - 352
Target Start/End: Original strand, 38110699 - 38111021
Alignment:
| Q |
30 |
tatgatatgataccttaccttaacatggtttttgtagtattgcttaacaacgggatgtgtaaagaagtcatcgtcgcttttgacatgttgaccacgttct |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38110699 |
tatgatatgataccttaccttaacatggtttttgtagtattgcttaacaacgggatgtgtaaagaagtcatcgtcgcttttgacatgttgaccacgttct |
38110798 |
T |
|
| Q |
130 |
cttgcccattgtacatatttatgttttcctcccaaagcattccaattattcaccaagccaagtataagttgcactccgtannnnnnngactctgatatca |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38110799 |
cttgcccattgtacatatttatgttttcctcccaaagcattccaattattcaccaagccaagtataagttgcactccgtatttttttgactctgatatca |
38110898 |
T |
|
| Q |
230 |
caaaatctaatccctacatacatatgcaaatattattaaacgaaaattccaactatgatgtaaaaatatcgtggaataacgggaacaaattttcnnnnnn |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38110899 |
caaaatctaatccctacatacatatgcaaatattattaaacgaaaattccaactatgatgtaaaaatatcgtggaataacgggaacaaattttcaaaaaa |
38110998 |
T |
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| Q |
330 |
nntaacacactttggcctttgct |
352 |
Q |
| |
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||||||||||||||| ||||| |
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| T |
38110999 |
aataacacactttggccattgct |
38111021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 45 - 245
Target Start/End: Original strand, 38085615 - 38085815
Alignment:
| Q |
45 |
taccttaacatggtttttgtagtattgcttaacaacgggatgtgtaaagaagtcatcgtcgcttttgacatgttgaccacgttctcttgcccattgtaca |
144 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| |||||| || ||||||||||||| ||||||| || ||| |
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| T |
38085615 |
taccttaacatgatttttgtagtattgcttaacaacggggtgtgtaaagaagtcatcatcgtttttgatattttgaccacgttcttttgcccactgcaca |
38085714 |
T |
|
| Q |
145 |
tatttatgttttcctcccaaagcattccaattattcaccaagccaagtataagttgcactccgtannnnnnngactctgatatcacaaaatctaatccct |
244 |
Q |
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| T |
38085715 |
tatttgttcttgcctccaaaatcattccaattattcaccaagctaagtataagtttcactccatatttgcttgcctctgatatcacaaaatccaatgcct |
38085814 |
T |
|
| Q |
245 |
a |
245 |
Q |
| |
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| |
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| T |
38085815 |
a |
38085815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 45 - 263
Target Start/End: Original strand, 38142280 - 38142498
Alignment:
| Q |
45 |
taccttaacatggtttttgtagtattgcttaacaacgggatgtgtaaagaagtcatcgtcgcttttgacatgttgaccacgttctcttgcccattgtaca |
144 |
Q |
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||||||||||| ||||||||||||||||||||||| |||| ||||||||||||| || ||||||||| ||||||||||||||||||||| || ||| |
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| T |
38142280 |
taccttaacattgtttttgtagtattgcttaacaagaggattaataaagaagtcatcttcaattttgacattttgaccacgttctcttgcccactgcaca |
38142379 |
T |
|
| Q |
145 |
tatttatgttttcctcccaaagcattccaattattcaccaagccaagtataagttgcactccgtannnnnnngactctgatatcacaaaatctaatccct |
244 |
Q |
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||||| | ||| ||||| ||| |||||||||||||||| |||| |||||||||| |||||| || | |||||||||||||||||| ||||||| |
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| T |
38142380 |
tatttctttttgcctccaaaatcattccaattattcactaagctcagtataagtttcactccatatttgtttgcctctgatatcacaaaatccaatccct |
38142479 |
T |
|
| Q |
245 |
acatacatatgcaaatatt |
263 |
Q |
| |
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|| |||| ||||||||||| |
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| T |
38142480 |
acgtacacatgcaaatatt |
38142498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 45 - 263
Target Start/End: Original strand, 38155626 - 38155844
Alignment:
| Q |
45 |
taccttaacatggtttttgtagtattgcttaacaacgggatgtgtaaagaagtcatcgtcgcttttgacatgttgaccacgttctcttgcccattgtaca |
144 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| || | ||||||||||||| || ||||||||| ||||||||||||||||||||| || ||| |
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| T |
38155626 |
taccttaacattgtttttgtagtattgcttaacaagagggttaataaagaagtcatcttcaattttgacattttgaccacgttctcttgcccactgcaca |
38155725 |
T |
|
| Q |
145 |
tatttatgttttcctcccaaagcattccaattattcaccaagccaagtataagttgcactccgtannnnnnngactctgatatcacaaaatctaatccct |
244 |
Q |
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||||| | ||| ||||| ||| |||||||||||||||| |||| |||||||||| |||||| || | |||||||||||||||||| || |||| |
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| T |
38155726 |
tatttctttttgcctccaaaatcattccaattattcactaagctcagtataagtttcactccatattttcttgcctctgatatcacaaaatccaaaccct |
38155825 |
T |
|
| Q |
245 |
acatacatatgcaaatatt |
263 |
Q |
| |
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||||||| |||||| |||| |
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| T |
38155826 |
acatacacatgcaagtatt |
38155844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 49 - 249
Target Start/End: Original strand, 38090602 - 38090802
Alignment:
| Q |
49 |
ttaacatggtttttgtagtattgcttaacaacgggatgtgtaaagaagtcatcgtcgcttttgacatgttgaccacgttctcttgcccattgtacatatt |
148 |
Q |
| |
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|||||||| |||||||||||||||||||||| || |||||||||||||| ||||| |||| | | ||||| |||||||||||||||| ||||||| |
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| T |
38090602 |
ttaacatgatttttgtagtattgcttaacaagagggtgtgtaaagaagtcgtcgtcattttttatgttatgaccgtgttctcttgcccattgaacatatt |
38090701 |
T |
|
| Q |
149 |
tatgttttcctcccaaagcattccaattattcaccaagccaagtataagttgcactccgtannnnnnngactctgatatcacaaaatctaatccctacat |
248 |
Q |
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| | ||| ||||| ||| |||||||||||| | |||| ||||| | || |||||| || | |||||||||||||||||||||||||| ||| |
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| T |
38090702 |
tgtttttgcctccaaaattattccaattattggctaagcttagtatcaatttcactccatatttgcttgcctctgatatcacaaaatctaatccctgcat |
38090801 |
T |
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| Q |
249 |
a |
249 |
Q |
| |
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| |
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| T |
38090802 |
a |
38090802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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