View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9428_low_15 (Length: 346)
Name: NF9428_low_15
Description: NF9428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9428_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 337
Target Start/End: Original strand, 41890364 - 41890682
Alignment:
| Q |
19 |
aaattgataatcaatacattgataaaacaagtcttaaatttctttggtttcttgattcattacccaattgatgaaccagttgatgctgaatttctttggt |
118 |
Q |
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| T |
41890364 |
aaattgataatcaatacattgagaaaacaagtcttaaatttctttggtttcttgattcattacccaattgatgaaccagttgatgctgaatttctttggt |
41890463 |
T |
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| Q |
119 |
ttcttgattatcatccacattatgctaggaagctgaaacaattaacaagccaataattgactttttagtttcagaatcaattcatcttaaattgacaatt |
218 |
Q |
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| T |
41890464 |
ttcttgattatcatccacattatgctaggaagctgaaacaattaacaagccaataattgactttttagtttcagaatcaattcattttaaattgacaatt |
41890563 |
T |
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| Q |
219 |
tgacataagaatagagaggacaagagagccttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaatccaagaagatcaccaaagaatggaaa |
318 |
Q |
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| T |
41890564 |
tgacataagaatagagaggacaagagagccttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaatccaagaagatcaccaaagaatggaaa |
41890663 |
T |
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| Q |
319 |
agtgactccaaagaataat |
337 |
Q |
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| T |
41890664 |
agtgactccaaagaataat |
41890682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 75 - 337
Target Start/End: Original strand, 41896022 - 41896294
Alignment:
| Q |
75 |
tcattacccaattgatgaaccagttgatgctgaatttctttggtttcttgattatcatccacattatgctaggaagctgaaacaattaacaagccaataa |
174 |
Q |
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| T |
41896022 |
tcattacccaattgatgaaccaattgatactgaatctccttggcttcttgattatcaaccacattatactaggaagctgaaataattcacaagaaaataa |
41896121 |
T |
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| Q |
175 |
ttgactttttagtttcagaatcaattcatcttaaa--ttgacaatttgacataagaatagaga--------ggacaagagagccttacaaaatatgaagt |
264 |
Q |
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| T |
41896122 |
ttcatcttttgattttataattaattcatttaaaaatttgacaatttgacataagcatagagaaattgagaggacaagagtgccttacaaaatatgacgt |
41896221 |
T |
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| Q |
265 |
gggagcaaaaccaaatccaccaaagaatccaagaagatcaccaaagaatggaaaagtgactccaaagaataat |
337 |
Q |
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| T |
41896222 |
gggagcaaaaccaaatccaccaaagaacccaagaagatctccaaagaaaggaaaactcaccccaaataataat |
41896294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 161
Target Start/End: Complemental strand, 22552153 - 22552070
Alignment:
| Q |
78 |
ttacccaattgatgaaccagttgatgctgaatttctttggtttcttgattatcatccacattatgctaggaagctgaaacaatt |
161 |
Q |
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| T |
22552153 |
ttacccaatttatgaaccagttgatgctaaatctctttggtttcttgattattagccacattatactaggaagctgaaacaatt |
22552070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 248 - 312
Target Start/End: Complemental strand, 22551974 - 22551910
Alignment:
| Q |
248 |
cttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaatccaagaagatcaccaaagaa |
312 |
Q |
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| T |
22551974 |
cttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaagccaagaagatcgccaaagaa |
22551910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 315
Target Start/End: Complemental strand, 43855252 - 43855185
Alignment:
| Q |
248 |
cttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaatccaagaagatcaccaaagaatgg |
315 |
Q |
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||||||||||||| ||||||||||| | ||||| ||||| |||||||| ||| ||||||||||||| |
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| T |
43855252 |
cttacaaaatatgttgtgggagcaaatgccaatcctccaaaaaatccaaggagagcaccaaagaatgg |
43855185 |
T |
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