View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9428_low_18 (Length: 316)

Name: NF9428_low_18
Description: NF9428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9428_low_18
NF9428_low_18
[»] chr3 (20 HSPs)
chr3 (16-307)||(30990111-30990402)
chr3 (34-219)||(22104154-22104338)
chr3 (26-194)||(22113844-22114012)
chr3 (23-194)||(22033981-22034152)
chr3 (34-219)||(22178848-22179032)
chr3 (35-201)||(22621772-22621938)
chr3 (34-195)||(21936607-21936768)
chr3 (23-195)||(21945087-21945259)
chr3 (23-179)||(22010301-22010457)
chr3 (23-179)||(22186467-22186623)
chr3 (38-167)||(18967828-18967957)
chr3 (34-195)||(22657923-22658084)
chr3 (35-161)||(22616099-22616225)
chr3 (35-140)||(2789896-2790001)
chr3 (37-196)||(22649019-22649178)
chr3 (35-140)||(2806799-2806904)
chr3 (82-191)||(22040885-22040994)
chr3 (47-131)||(2758761-2758845)
chr3 (35-140)||(2796899-2797004)
chr3 (52-140)||(2768607-2768695)
[»] chr1 (3 HSPs)
chr1 (34-197)||(34979621-34979784)
chr1 (34-195)||(34988680-34988841)
chr1 (34-195)||(34974965-34975126)
[»] chr7 (2 HSPs)
chr7 (44-178)||(873402-873536)
chr7 (44-178)||(1234679-1234813)


Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 16 - 307
Target Start/End: Original strand, 30990111 - 30990402
Alignment:
Q  16 gttttgactccttcagctgctgcagctcttttatcagcatctttaagaaaggcttgaatgctttcaagttcatctttaatatctaaaaattccttgtgaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30990111 gttttgactccttcagctgctgcagctcttttatcagcatctttaagaaaggcttgaatgctttcaagttcatctttaatatctgaaaattccttgtgaa 30990210  T
Q  116 cacctcttagcagattggcttcttcccttaacagtggaagtagttgatcaataactaaagacactgcaatttctgccatttgagtctatgttgtgattat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30990211 cacctcttagcagattggcttcttcccttaacagtggaagtagttgatcaataactaaagacactgcaatttctgccatttgagtctatgttgtgattat 30990310  T
Q  216 tgttttaagagatattttgtttctgccatttgagtcttagttgatgaagacagatatcaactaaatggaaagcatctatcatgaagaataat 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30990311 tgttttaagagatattttgtttctgccatttgagtcttagttgatgaagacaaatatcaactaaatggaaagcatctatcatgaagaataat 30990402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 34 - 219
Target Start/End: Complemental strand, 22104338 - 22104154
Alignment:
Q  34 gctgcagctcttttatcagcatctttaagaaaggcttgaatgctttcaagttcatctttaatatctaaaaattccttgtgaacacctcttagcagattgg 133  Q
    |||||||||||| ||||||||||||| || |||||||| ||||||||||||||||||||||  |||  ||||||||||||||| ||||| | ||| ||||    
T  22104338 gctgcagctcttctatcagcatctttgaggaaggcttggatgctttcaagttcatctttaaggtctgcaaattccttgtgaacgcctctcaacagcttgg 22104239  T
Q  134 cttcttcccttaacagtggaagtagttgatcaataactaaagacactgcaatttctgccatttgagtctatgttgtgattattgtt 219  Q
    |||| |||||||||| ||||| |||||| |||||||||||||||||  | ||||| ||||| ||| |||| |||||||||||||||    
T  22104238 cttcatcccttaacaatggaactagttggtcaataactaaagacaccaccatttccgccatatgactcta-gttgtgattattgtt 22104154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 26 - 194
Target Start/End: Complemental strand, 22114012 - 22113844
Alignment:
Q  26 cttcagctgctgcagctcttttatcagcatctttaagaaaggcttgaatgctttcaagttcatctttaatatctaaaaattccttgtgaacacctcttag 125  Q
    |||||||| |||| ||||||||||||||||| || || || |||||||||||||| |||||||||||||| |||   || ||||||||||| ||||| |     
T  22114012 cttcagctcctgctgctcttttatcagcatccttcaggaatgcttgaatgctttccagttcatctttaatctctgcgaactccttgtgaacgcctctcaa 22113913  T
Q  126 cagattggcttcttcccttaacagtggaagtagttgatcaataactaaagacactgcaatttctgccat 194  Q
    ||| |||||||||||||||||||||||||||||||| |||| |||||||||||| |  |||||||||||    
T  22113912 cagcttggcttcttcccttaacagtggaagtagttggtcaacaactaaagacaccgacatttctgccat 22113844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 23 - 194
Target Start/End: Complemental strand, 22034152 - 22033981
Alignment:
Q  23 ctccttcagctgctgcagctcttttatcagcatctttaagaaaggcttgaatgctttcaagttcatctttaatatctaaaaattccttgtgaacacctct 122  Q
    ||||||||||| |||| ||||||||||||||||| || || || |||||||||||||| |||||||||||||| |||   || ||||||||||| |||||    
T  22034152 ctccttcagctcctgctgctcttttatcagcatccttcaggaatgcttgaatgctttccagttcatctttaatctctgcgaactccttgtgaacgcctct 22034053  T
Q  123 tagcagattggcttcttcccttaacagtggaagtagttgatcaataactaaagacactgcaatttctgccat 194  Q
     | ||| |||||||||||| ||||||||||||||||||| |||| |||||||||||| || ||||| |||||    
T  22034052 caacagcttggcttcttccgttaacagtggaagtagttggtcaacaactaaagacaccgccatttccgccat 22033981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 34 - 219
Target Start/End: Complemental strand, 22179032 - 22178848
Alignment:
Q  34 gctgcagctcttttatcagcatctttaagaaaggcttgaatgctttcaagttcatctttaatatctaaaaattccttgtgaacacctcttagcagattgg 133  Q
    |||||||||||| ||||||||||||| || |||||||| |||||||||| ||||||||||||||||  |||||||||| |||||||| | || ||||||     
T  22179032 gctgcagctcttctatcagcatctttgaggaaggcttggatgctttcaaattcatctttaatatcttcaaattccttgggaacacctttgagaagattga 22178933  T
Q  134 cttcttcccttaacagtggaagtagttgatcaataactaaagacactgcaatttctgccatttgagtctatgttgtgattattgtt 219  Q
    ||||||   |||||| |||||| ||||| |||||| | ||||| ||||| ||||||||||| ||| |||| |||||||||||||||    
T  22178932 cttcttgtgttaacaatggaagcagttggtcaatagcaaaagaaactgccatttctgccatatgactcta-gttgtgattattgtt 22178848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 35 - 201
Target Start/End: Original strand, 22621772 - 22621938
Alignment:
Q  35 ctgcagctcttttatcagcatctttaagaaaggcttgaatgctttcaagttcatctttaatatctaaaaattccttgtgaacacctcttagcagattggc 134  Q
    ||||||||||| |||||||||| ||||| |||||||| ||||||||||||||||||||||| |||  |||||| |||||||  ||  | |||| | ||||    
T  22621772 ctgcagctcttctatcagcatccttaaggaaggcttggatgctttcaagttcatctttaatgtctgcaaattctttgtgaatgccattgagcaaactggc 22621871  T
Q  135 ttcttcccttaacagtggaagtagttgatcaataactaaagacactgcaatttctgccatttgagtc 201  Q
    |||||||||||||| |||||||| ||| ||||   | ||||||||||||||||||||||||| ||||    
T  22621872 ttcttcccttaacaatggaagtaattggtcaactgcaaaagacactgcaatttctgccattttagtc 22621938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 34 - 195
Target Start/End: Complemental strand, 21936768 - 21936607
Alignment:
Q  34 gctgcagctcttttatcagcatctttaagaaaggcttgaatgctttcaagttcatctttaatatctaaaaattccttgtgaacacctcttagcagattgg 133  Q
    |||||||||||| |||||||||| ||||| |||||||| ||||||||||||||||||||||| |||  ||||||||||||||||||| | || ||||||     
T  21936768 gctgcagctcttctatcagcatccttaaggaaggcttggatgctttcaagttcatctttaatgtctccaaattccttgtgaacacctttgagaagattga 21936669  T
Q  134 cttcttcccttaacagtggaagtagttgatcaataactaaagacactgcaatttctgccatt 195  Q
    |||||||  | ||||  ||||| ||||| |||||| | |||||||| || ||||||||||||    
T  21936668 cttcttctgtcaacaacggaagaagttggtcaatagcaaaagacacagccatttctgccatt 21936607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 195
Target Start/End: Complemental strand, 21945259 - 21945087
Alignment:
Q  23 ctccttcagctgctgcagctcttttatcagcatctttaagaaaggcttgaatgctttcaagttcatctttaatatctaaaaattccttgtgaacacctct 122  Q
    ||||||||| | |||| ||||||||||||||||| || || || ||||||||||||||||||||||||||||| |||   || || || ||||| |||||    
T  21945259 ctccttcagttcctgctgctcttttatcagcatccttgaggaatgcttgaatgctttcaagttcatctttaatctctgcgaactcgttatgaacgcctct 21945160  T
Q  123 tagcagattggcttcttcccttaacagtggaagtagttgatcaataactaaagacactgcaatttctgccatt 195  Q
     | ||| || |||||||||||||||||||||| |||||| |||| |||||||||||| || ||||| ||||||    
T  21945159 caacagcttagcttcttcccttaacagtggaactagttggtcaacaactaaagacaccgccatttccgccatt 21945087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 179
Target Start/End: Complemental strand, 22010457 - 22010301
Alignment:
Q  23 ctccttcagctgctgcagctcttttatcagcatctttaagaaaggcttgaatgctttcaagttcatctttaatatctaaaaattccttgtgaacacctct 122  Q
    ||||||||||| |||| ||||||||||||||||| || || || |||||||||||||| |||||| ||||||| | |  ||| ||||||||||  |||||    
T  22010457 ctccttcagctcctgctgctcttttatcagcatccttcaggaatgcttgaatgctttccagttcagctttaatgtttgcaaactccttgtgaatgcctct 22010358  T
Q  123 tagcagattggcttcttcccttaacagtggaagtagttgatcaataactaaagacac 179  Q
     | ||| |||| |||||||||||||| |||||||||||| |||||||||||||||||    
T  22010357 caacagcttggtttcttcccttaacactggaagtagttggtcaataactaaagacac 22010301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 179
Target Start/End: Complemental strand, 22186623 - 22186467
Alignment:
Q  23 ctccttcagctgctgcagctcttttatcagcatctttaagaaaggcttgaatgctttcaagttcatctttaatatctaaaaattccttgtgaacacctct 122  Q
    ||||||||||| |||| ||||||||||||||||| || || || |||||||||||||| |||||| ||||||| | |  ||| ||||||||||  |||||    
T  22186623 ctccttcagctcctgctgctcttttatcagcatccttcaggaatgcttgaatgctttccagttcagctttaatgtttgcaaaatccttgtgaatgcctct 22186524  T
Q  123 tagcagattggcttcttcccttaacagtggaagtagttgatcaataactaaagacac 179  Q
     | ||| |||| |||||||||||||| |||||||||||| |||||||||||||||||    
T  22186523 caacagcttggtttcttcccttaacactggaagtagttggtcaataactaaagacac 22186467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 38 - 167
Target Start/End: Original strand, 18967828 - 18967957
Alignment:
Q  38 cagctcttttatcagcatctttaagaaaggcttgaatgctttcaagttcatctttaatatctaaaaattccttgtgaacacctcttagcagattggcttc 137  Q
    ||||||||||||||||||| | |||||||||||| || |||||||||||||||||||| |||  |||||| ||||||||| || | |||||| || ||||    
T  18967828 cagctcttttatcagcatcctgaagaaaggcttggatactttcaagttcatctttaatgtcttcaaattcgttgtgaacatctttgagcagactgacttc 18967927  T
Q  138 ttcccttaacagtggaagtagttgatcaat 167  Q
    |||  |||| | |||||| ||||| |||||    
T  18967928 ttctgttaataatggaagaagttggtcaat 18967957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 34 - 195
Target Start/End: Original strand, 22657923 - 22658084
Alignment:
Q  34 gctgcagctcttttatcagcatctttaagaaaggcttgaatgctttcaagttcatctttaatatctaaaaattccttgtgaacacctcttagcagattgg 133  Q
    |||| ||||||| | ||||| || ||||| |||||| | || || || |||||||||||||||||| |||||| ||||||||||||| | |||||||||     
T  22657923 gctgtagctcttctgtcagcgtccttaaggaaggctcggatactctccagttcatctttaatatctgaaaatttcttgtgaacacctttgagcagattga 22658022  T
Q  134 cttcttcccttaacagtggaagtagttgatcaataactaaagacactgcaatttctgccatt 195  Q
     |||| |  ||||||||||||| | ||| |||||| | |||||||| || ||||||||||||    
T  22658023 tttctcctgttaacagtggaagcaattggtcaatagcaaaagacaccgctatttctgccatt 22658084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 35 - 161
Target Start/End: Original strand, 22616099 - 22616225
Alignment:
Q  35 ctgcagctcttttatcagcatctttaagaaaggcttgaatgctttcaagttcatctttaatatctaaaaattccttgtgaacacctcttagcagattggc 134  Q
    ||||||||||||| || || || ||||| || ||||| |||||||||||||||||||| || | |  |||||||||||| |  ||||  |||| ||||||    
T  22616099 ctgcagctcttttttcggcgtccttaaggaatgcttggatgctttcaagttcatctttgatgtatgcaaattccttgtggatgcctccaagcaaattggc 22616198  T
Q  135 ttcttcccttaacagtggaagtagttg 161  Q
    ||||| ||||||||||||||| |||||    
T  22616199 ttctttccttaacagtggaagcagttg 22616225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 2790001 - 2789896
Alignment:
Q  35 ctgcagctcttttatcagcatctttaagaaaggcttgaatgctttcaagttcatctttaatatctaaaaattccttgtgaacacctcttagcagattggc 134  Q
    ||||||||||| |||| |||||||| || ||| |||||||||| |||||||||||||| || |||||||| || ||||| ||||| || || ||||| |     
T  2790001 ctgcagctcttatatctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctaaaaaatctttgtgcacaccactcaggagatttgt 2789902  T
Q  135 ttcttc 140  Q
    ||||||    
T  2789901 ttcttc 2789896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 196
Target Start/End: Original strand, 22649019 - 22649178
Alignment:
Q  37 gcagctcttttatcagcatctttaagaaaggcttgaatgctttcaagttcatctttaatatctaaaaattccttgtgaacacctcttagcagattggctt 136  Q
    ||||||||| |||||||||| |||||  ||||||| ||| | || |||||||||||||| | |  |||||| |||||||  ||| | | ||||   ||||    
T  22649019 gcagctcttctatcagcatccttaagggaggcttggatgatctccagttcatctttaatgtttgcaaattcgttgtgaatgcctttcaacagaccagctt 22649118  T
Q  137 cttcccttaacagtggaagtagttgatcaataactaaagacactgcaatttctgccattt 196  Q
    ||||||||||||   |||||||||| ||||   | ||||||||||| |||||||||||||    
T  22649119 cttcccttaacaaatgaagtagttggtcaaccgcaaaagacactgccatttctgccattt 22649178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 2806904 - 2806799
Alignment:
Q  35 ctgcagctcttttatcagcatctttaagaaaggcttgaatgctttcaagttcatctttaatatctaaaaattccttgtgaacacctcttagcagattggc 134  Q
    |||| |||||| |||| |||||||| || ||| |||||||||| |||||||||||||| || ||| |||||||  |||| |||||| |||| ||||| |     
T  2806904 ctgctgctcttctatctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaattctgtgtgtacaccttttagaagatttgt 2806805  T
Q  135 ttcttc 140  Q
    ||||||    
T  2806804 ttcttc 2806799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 191
Target Start/End: Complemental strand, 22040994 - 22040885
Alignment:
Q  82 agttcatctttaatatctaaaaattccttgtgaacacctcttagcagattggcttcttcccttaacagtggaagtagttgatcaataactaaagacactg 181  Q
    |||||||||||||| |||   || ||||||||||| ||||| | ||| |||||||| | ||||||||  ||||||||||| |||| |||||| ||||| |    
T  22040994 agttcatctttaatctctgcgaactccttgtgaacgcctctcaacagcttggcttccttccttaacaacggaagtagttggtcaacaactaatgacaccg 22040895  T
Q  182 caatttctgc 191  Q
    | ||||||||    
T  22040894 ccatttctgc 22040885  T

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Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 47 - 131
Target Start/End: Complemental strand, 2758845 - 2758761
Alignment:
Q  47 tatcagcatctttaagaaaggcttgaatgctttcaagttcatctttaatatctaaaaattccttgtgaacacctcttagcagatt 131  Q
    |||| |||||||| || |||  |||||||||||||||||||||||| || ||||| || || ||||| ||||||||||| |||||    
T  2758845 tatctgcatctttgaggaagatttgaatgctttcaagttcatctttgatgtctaagaaatctttgtgtacacctcttagaagatt 2758761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 2797004 - 2796899
Alignment:
Q  35 ctgcagctcttttatcagcatctttaagaaaggcttgaatgctttcaagttcatctttaatatctaaaaattccttgtgaacacctcttagcagattggc 134  Q
    ||||||||||| |||| |||||||| || ||  |||||||||| |||||||||||| | || ||| |||| || ||||| ||||  || |||||||| |     
T  2797004 ctgcagctcttgtatctgcatctttgaggaaaacttgaatgctctcaagttcatctgtgatgtctgaaaaatctttgtgcacacgactcagcagatttgt 2796905  T
Q  135 ttcttc 140  Q
    ||||||    
T  2796904 ttcttc 2796899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 2768695 - 2768607
Alignment:
Q  52 gcatctttaagaaaggcttgaatgctttcaagttcatctttaatatctaaaaattccttgtgaacacctcttagcagattggcttcttc 140  Q
    |||||||| || ||| |||||||||| |||||||||||||| || ||| |||| ||  |||| ||||| || |||||||| | ||||||    
T  2768695 gcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtgtacaccactcagcagatttgtttcttc 2768607  T

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Target: chr1 (Bit Score: 72; Significance: 9e-33; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 34 - 197
Target Start/End: Complemental strand, 34979784 - 34979621
Alignment:
Q  34 gctgcagctcttttatcagcatctttaagaaaggcttgaatgctttcaagttcatctttaatatctaaaaattccttgtgaacacctcttagcagattgg 133  Q
    |||||||||||| |||||||||||||||| ||||||| ||||||||| ||||||| |||||| |||  |||||| |||||||||||| |||| || ||||    
T  34979784 gctgcagctcttctatcagcatctttaaggaaggcttcaatgctttcgagttcatatttaatgtctgcaaattctttgtgaacaccttttagtagtttgg 34979685  T
Q  134 cttcttcccttaacagtggaagtagttgatcaataactaaagacactgcaatttctgccatttg 197  Q
     |||||   |||||| |||||| ||||| |||||| | |||||||||||  |||||||||||||    
T  34979684 tttcttatgttaacaatggaagcagttggtcaatagcaaaagacactgccttttctgccatttg 34979621  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 34 - 195
Target Start/End: Complemental strand, 34988841 - 34988680
Alignment:
Q  34 gctgcagctcttttatcagcatctttaagaaaggcttgaatgctttcaagttcatctttaatatctaaaaattccttgtgaacacctcttagcagattgg 133  Q
    |||||||||||| |||||||||||| ||| |||| ||| |||||||| ||||||| |||||| |||  |||||| |||||||||||| | || || ||||    
T  34988841 gctgcagctcttctatcagcatcttcaaggaaggtttggatgctttccagttcatatttaatgtctgcaaattctttgtgaacacctttcagtagtttgg 34988742  T
Q  134 cttcttcccttaacagtggaagtagttgatcaataactaaagacactgcaatttctgccatt 195  Q
     ||||||| |||||| |||||| ||||| | |||| | ||||||||||| ||||||||||||    
T  34988741 tttcttccgttaacaatggaagcagttgcttaatagcaaaagacactgccatttctgccatt 34988680  T

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Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 195
Target Start/End: Complemental strand, 34975126 - 34974965
Alignment:
Q  34 gctgcagctcttttatcagcatctttaagaaaggcttgaatgctttcaagttcatctttaatatctaaaaattccttgtgaacacctcttagcagattgg 133  Q
    |||||||||||| |||||| |||||| || ||||||||||||||||| ||||||| |||||| |||  |||||| |||||||||||| | || |  ||||    
T  34975126 gctgcagctcttctatcagaatctttgaggaaggcttgaatgctttcgagttcatatttaatgtctgcaaattctttgtgaacacctttcagtaatttgg 34975027  T
Q  134 cttcttcccttaacagtggaagtagttgatcaataactaaagacactgcaatttctgccatt 195  Q
     || | |  |||||| |||||| ||||| |||||| | ||||||||||| ||||||||||||    
T  34975026 tttttgctgttaacaatggaagcagttggtcaatagcaaaagacactgctatttctgccatt 34974965  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 178
Target Start/End: Original strand, 873402 - 873536
Alignment:
Q  44 ttttatcagcatctttaagaaaggcttgaatgctttcaagttcatctttaatatctaaaaattccttgtgaacacctcttagcagattggcttcttccct 143  Q
    ||||||||||||| ||||| || |||||||| ||||| |||||||||||||| |||  ||| |||||||| | || ||| |  || ||||||||||||||    
T  873402 ttttatcagcatccttaaggaatgcttgaatactttccagttcatctttaatgtctgcaaactccttgtggatacttctcaagagcttggcttcttccct 873501  T
Q  144 taacagtggaagtagttgatcaataactaaagaca 178  Q
    ||| |||||||||||||| |||| ||| |||||||    
T  873502 taatagtggaagtagttggtcaacaaccaaagaca 873536  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 178
Target Start/End: Original strand, 1234679 - 1234813
Alignment:
Q  44 ttttatcagcatctttaagaaaggcttgaatgctttcaagttcatctttaatatctaaaaattccttgtgaacacctcttagcagattggcttcttccct 143  Q
    ||||||||||||| ||||| || |||||||| ||||| |||||||||||||| |||  ||| |||||||| | || ||| |  || ||||||||||||||    
T  1234679 ttttatcagcatccttaaggaatgcttgaatactttccagttcatctttaatgtctgcaaactccttgtggatacttctcaagagcttggcttcttccct 1234778  T
Q  144 taacagtggaagtagttgatcaataactaaagaca 178  Q
    ||| |||||||||||||| |||| ||| |||||||    
T  1234779 taatagtggaagtagttggtcaacaaccaaagaca 1234813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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