View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9428_low_19 (Length: 312)

Name: NF9428_low_19
Description: NF9428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9428_low_19
NF9428_low_19
[»] chr5 (12 HSPs)
chr5 (22-248)||(7345231-7345457)
chr5 (23-129)||(18693748-18693854)
chr5 (19-129)||(21387683-21387793)
chr5 (19-94)||(4566997-4567072)
chr5 (19-94)||(15510258-15510333)
chr5 (19-82)||(20991656-20991719)
chr5 (19-82)||(22650635-22650698)
chr5 (19-53)||(5384382-5384416)
chr5 (19-53)||(18678022-18678056)
chr5 (19-48)||(20988736-20988765)
chr5 (273-301)||(7345152-7345180)
chr5 (22-94)||(15614955-15615027)
[»] chr3 (26 HSPs)
chr3 (19-129)||(39133063-39133173)
chr3 (19-129)||(17350062-17350172)
chr3 (22-129)||(32979137-32979244)
chr3 (19-80)||(52292640-52292701)
chr3 (20-59)||(51400262-51400301)
chr3 (19-129)||(11219476-11219586)
chr3 (22-84)||(39287519-39287581)
chr3 (19-81)||(55443558-55443620)
chr3 (19-84)||(10987658-10987723)
chr3 (19-84)||(39288444-39288509)
chr3 (19-84)||(52293528-52293593)
chr3 (19-84)||(53047943-53048008)
chr3 (19-84)||(53049042-53049107)
chr3 (21-129)||(53808366-53808474)
chr3 (23-82)||(1301082-1301141)
chr3 (19-82)||(40502222-40502285)
chr3 (19-81)||(5416244-5416306)
chr3 (19-53)||(8372652-8372686)
chr3 (19-53)||(19622051-19622085)
chr3 (22-84)||(29536763-29536825)
chr3 (19-53)||(48252979-48253013)
chr3 (19-53)||(51401387-51401421)
chr3 (64-125)||(7483489-7483550)
chr3 (20-53)||(47766987-47767020)
chr3 (19-84)||(48035329-48035394)
chr3 (19-79)||(53342762-53342822)
[»] chr2 (15 HSPs)
chr2 (19-129)||(12852932-12853042)
chr2 (19-129)||(23177720-23177830)
chr2 (19-129)||(23588977-23589087)
chr2 (19-82)||(33837762-33837825)
chr2 (72-129)||(14714591-14714648)
chr2 (19-59)||(12958462-12958502)
chr2 (38-125)||(41296418-41296505)
chr2 (19-53)||(2581849-2581883)
chr2 (19-84)||(2305586-2305651)
chr2 (24-129)||(3528225-3528330)
chr2 (64-125)||(4512197-4512258)
chr2 (64-129)||(26205104-26205169)
chr2 (19-52)||(41795989-41796022)
chr2 (19-59)||(10368415-10368455)
chr2 (19-51)||(37867802-37867834)
[»] chr1 (16 HSPs)
chr1 (19-129)||(26056107-26056217)
chr1 (64-129)||(50678454-50678519)
chr1 (19-129)||(52742936-52743046)
chr1 (38-125)||(30551553-30551640)
chr1 (19-129)||(44977267-44977377)
chr1 (19-77)||(1061374-1061432)
chr1 (19-53)||(13641303-13641337)
chr1 (23-121)||(14169669-14169767)
chr1 (19-53)||(25786014-25786048)
chr1 (63-129)||(27689373-27689439)
chr1 (19-84)||(2236859-2236924)
chr1 (23-84)||(2237983-2238044)
chr1 (19-84)||(35683101-35683166)
chr1 (20-53)||(47411484-47411517)
chr1 (22-82)||(9119851-9119911)
chr1 (89-129)||(49141456-49141496)
[»] scaffold0051 (1 HSPs)
scaffold0051 (19-129)||(39861-39971)
[»] chr8 (15 HSPs)
chr8 (23-129)||(37276203-37276309)
chr8 (20-82)||(6844580-6844642)
chr8 (19-53)||(14820239-14820273)
chr8 (64-129)||(21961914-21961979)
chr8 (20-53)||(43275797-43275830)
chr8 (19-59)||(29739673-29739713)
chr8 (19-59)||(41867946-41867986)
chr8 (70-129)||(44103256-44103315)
chr8 (23-129)||(7486127-7486233)
chr8 (19-53)||(24068376-24068410)
chr8 (23-129)||(36756114-36756220)
chr8 (19-53)||(38591043-38591077)
chr8 (64-125)||(21670155-21670216)
chr8 (19-84)||(31625389-31625454)
chr8 (65-129)||(13363538-13363602)
[»] scaffold1974 (1 HSPs)
scaffold1974 (19-129)||(588-698)
[»] scaffold1878 (1 HSPs)
scaffold1878 (19-129)||(576-686)
[»] scaffold0290 (1 HSPs)
scaffold0290 (19-129)||(9438-9548)
[»] chr4 (14 HSPs)
chr4 (22-129)||(44302769-44302876)
chr4 (20-129)||(86850-86959)
chr4 (19-84)||(29833418-29833483)
chr4 (19-50)||(937137-937168)
chr4 (23-82)||(30671044-30671103)
chr4 (19-53)||(1273469-1273503)
chr4 (21-115)||(11094574-11094668)
chr4 (19-53)||(15787538-15787572)
chr4 (19-53)||(33377400-33377434)
chr4 (19-53)||(37560335-37560369)
chr4 (19-129)||(43894151-43894261)
chr4 (19-49)||(44128374-44128404)
chr4 (19-53)||(46796062-46796096)
chr4 (19-49)||(56000333-56000363)
[»] chr7 (14 HSPs)
chr7 (19-67)||(18802411-18802459)
chr7 (19-82)||(19279619-19279682)
chr7 (19-82)||(41616670-41616733)
chr7 (20-82)||(35480254-35480316)
chr7 (19-84)||(41126285-41126350)
chr7 (19-53)||(17288256-17288290)
chr7 (19-53)||(18801261-18801295)
chr7 (19-53)||(22746356-22746390)
chr7 (19-53)||(25153704-25153738)
chr7 (22-80)||(38001553-38001611)
chr7 (20-53)||(24873633-24873666)
chr7 (19-84)||(36673841-36673906)
chr7 (19-84)||(40926524-40926589)
chr7 (65-129)||(24495011-24495075)
[»] chr6 (8 HSPs)
chr6 (19-94)||(2138632-2138707)
chr6 (19-81)||(28225470-28225532)
chr6 (19-82)||(8447267-8447330)
chr6 (19-82)||(8456071-8456134)
chr6 (19-53)||(8412352-8412386)
chr6 (19-53)||(9927652-9927686)
chr6 (63-129)||(13507131-13507197)
chr6 (19-53)||(22299939-22299973)
[»] scaffold0084 (1 HSPs)
scaffold0084 (19-129)||(13164-13274)
[»] scaffold0038 (1 HSPs)
scaffold0038 (19-81)||(25968-26030)
[»] scaffold0015 (1 HSPs)
scaffold0015 (64-129)||(207758-207823)
[»] scaffold0177 (1 HSPs)
scaffold0177 (19-84)||(1801-1866)
[»] scaffold1827 (1 HSPs)
scaffold1827 (22-82)||(1066-1126)
[»] scaffold0098 (1 HSPs)
scaffold0098 (89-129)||(41024-41064)


Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 22 - 248
Target Start/End: Complemental strand, 7345457 - 7345231
Alignment:
Q  22 ctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaacca 121  Q
    ||||||||||||||||||||||| |||||||| || |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7345457 ctaactataaagtgtctcaatttggtcccataaatattttgtcgttatctcttttggtcctctatgatagtttttaacatcaaaactctaaggtgaacca 7345358  T
Q  122 tatttaaacttaactctatgcaagatttaaaattagtactaagtgggatccgaaccaaatttgagttcccagttccattgcatgaaaatacgattagtag 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  7345357 tatttaaacttaactctatgcaagatttaaaattagtactaagtgggatccgaaccaaatttgaattcccagttccattgcatgaaaatatgattagtag 7345258  T
Q  222 cttcttctttagtgatgcaccatgagc 248  Q
    |||||||||||||||||||||||||||    
T  7345257 cttcttctttagtgatgcaccatgagc 7345231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 23 - 129
Target Start/End: Original strand, 18693748 - 18693854
Alignment:
Q  23 taactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaaccat 122  Q
    |||||||||| ||||||||| | |||||||| || || | |||||| ||||||||||||||| || ||||||||| ||||||||||||||||||||||||    
T  18693748 taactataaaatgtctcaatctggtcccataaatcttctgtcgttacctcttttggtcctctctgttagtttttaacatcaaaactctaaggtgaaccat 18693847  T
Q  123 atttaaa 129  Q
    || ||||    
T  18693848 atataaa 18693854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 21387683 - 21387793
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaa 118  Q
    |||||||||||||| ||||||||||| |||||||| || || |  ||||| ||||||||||||| | || ||||||||| ||||||||||||||||||||    
T  21387683 cccctaactataaaatgtctcaatttggtcccataaatcttctgccgttacctcttttggtcctgtctgttagtttttaacatcaaaactctaaggtgaa 21387782  T
Q  119 ccatatttaaa 129  Q
     ||||||||||    
T  21387783 acatatttaaa 21387793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 4566997 - 4567072
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctctatgatagttt 94  Q
    |||||||||||||||||||||||||| ||||| ||  | || | |||||| ||||||||||| ||| || ||||||    
T  4566997 cccctaactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcatctctgttagttt 4567072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 15510333 - 15510258
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctctatgatagttt 94  Q
    |||||||||||||||||||||||||| ||||| ||  | || |  ||||| ||||||||||||||| || ||||||    
T  15510333 cccctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtcctctctgttagttt 15510258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 20991719 - 20991656
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcct 82  Q
    |||||||||||||| ||||||||||| ||||| ||  | |||| |||||| |||||||||||||    
T  20991719 cccctaactataaaatgtctcaatttggtcccttatgtcttttgtcgttacctcttttggtcct 20991656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 22650698 - 22650635
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcct 82  Q
    |||||||||||||||||||||||||| ||||| ||  | ||||  ||||| |||||||||||||    
T  22650698 cccctaactataaagtgtctcaatttggtcccttatgtcttttgccgttacctcttttggtcct 22650635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 5384416 - 5384382
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccata 53  Q
    |||||||||||||||||||||||||| ||||||||    
T  5384416 cccctaactataaagtgtctcaatttggtcccata 5384382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 18678022 - 18678056
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccata 53  Q
    |||||||||||||||||||||||||| ||||||||    
T  18678022 cccctaactataaagtgtctcaatttggtcccata 18678056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 20988736 - 20988765
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtc 48  Q
    ||||||||||||||||||||||||||||||    
T  20988736 cccctaactataaagtgtctcaatttagtc 20988765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 301
Target Start/End: Complemental strand, 7345180 - 7345152
Alignment:
Q  273 aggaagaaacttgtaacatacgtagaata 301  Q
    |||||||||||||||||||||||||||||    
T  7345180 aggaagaaacttgtaacatacgtagaata 7345152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 15615027 - 15614955
Alignment:
Q  22 ctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctctatgatagttt 94  Q
    ||||||||||||||||||||||| || ||||| ||||| |  ||||  || |||||||||||| || ||||||    
T  15615027 ctaactataaagtgtctcaatttggttccataaattttctgccgtttactattttggtcctctctgttagttt 15614955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 39133063 - 39133173
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaa 118  Q
    |||||||||||||||||||||||||| ||||| ||  | || | |||||| ||||||||||||||| || ||||||||| |||||||  |||||||||||    
T  39133063 cccctaactataaagtgtctcaatttggtcccttatgtcttctctcgttacctcttttggtcctctctgttagtttttaacatcaaatgtctaaggtgaa 39133162  T
Q  119 ccatatttaaa 129  Q
    |||||||||||    
T  39133163 ccatatttaaa 39133173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 17350172 - 17350062
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaa 118  Q
    |||||||||||||||||||||||||| ||||| ||  | || |   |||| |||||||||||||||  | ||||||||| |||||||  |||||||||||    
T  17350172 cccctaactataaagtgtctcaatttggtcccttatgtcttctcctgttacctcttttggtcctctccgttagtttttaacatcaaatgtctaaggtgaa 17350073  T
Q  119 ccatatttaaa 129  Q
    |||||||||||    
T  17350072 ccatatttaaa 17350062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 32979137 - 32979244
Alignment:
Q  22 ctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaacca 121  Q
    |||||||||||||||||||||||  ||||||| ||||| |    ||| |||||||||||||||  | ||||||||| ||| ||||  ||||||||||| |    
T  32979137 ctaactataaagtgtctcaatttgatcccataaattttctgcaattacctcttttggtcctctccgttagtttttaacattaaaagactaaggtgaacta 32979236  T
Q  122 tatttaaa 129  Q
    ||||||||    
T  32979237 tatttaaa 32979244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 52292640 - 52292701
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtc 80  Q
    |||||||||||||||||||||||||||||||| ||  | |||| |||||| |||||||||||    
T  52292640 cccctaactataaagtgtctcaatttagtcccgtatgtcttttgtcgttacctcttttggtc 52292701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 51400262 - 51400301
Alignment:
Q  20 ccctaactataaagtgtctcaatttagtcccatagatttt 59  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  51400262 ccctaactataaagtgtctcaatttagtcccataaatttt 51400301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 11219476 - 11219586
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaa 118  Q
    |||||||||||||||||||||||||| ||| |||   | || |  ||||  || |||||||| |||  | ||| ||||| |||||||| |||||||||||    
T  11219476 cccctaactataaagtgtctcaatttggtctcatgagtcttctgccgtttactattttggtcatctccgttagattttaacatcaaaattctaaggtgaa 11219575  T
Q  119 ccatatttaaa 129  Q
    |||||||||||    
T  11219576 ccatatttaaa 11219586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 39287519 - 39287581
Alignment:
Q  22 ctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctct 84  Q
    ||||||||||||||||||||||| ||||| ||  |||| | |||||| |||||||||||||||    
T  39287519 ctaactataaagtgtctcaatttggtcccttatgttttctgtcgttacctcttttggtcctct 39287581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 55443620 - 55443558
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcc 81  Q
    |||||||||||||||||||||||||| ||||| ||  | |||| |||||| ||||||||||||    
T  55443620 cccctaactataaagtgtctcaatttggtcccttatgtcttttgtcgttacctcttttggtcc 55443558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 10987723 - 10987658
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctct 84  Q
    |||||||||||||||||||||||||| |||||||| ||||| |  |||| | | ||||||||||||    
T  10987723 cccctaactataaagtgtctcaatttggtcccataaattttatgccgttttttattttggtcctct 10987658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 39288509 - 39288444
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctct 84  Q
    |||||||||||||||||||||||||| ||||| ||  | || | ||||||||||||||||| ||||    
T  39288509 cccctaactataaagtgtctcaatttggtcccttatgtcttatgtcgttatctcttttggttctct 39288444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 52293593 - 52293528
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctct 84  Q
    |||||||||||||||||||||||||| ||||  ||  | || |||||||| |||||||||||||||    
T  52293593 cccctaactataaagtgtctcaatttggtcctttatgtcttctatcgttacctcttttggtcctct 52293528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 53047943 - 53048008
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctct 84  Q
    |||||||||||||||||||||||||| ||||| ||  | || | |||||| |||||||||||||||    
T  53047943 cccctaactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctct 53048008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 53049107 - 53049042
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctct 84  Q
    |||||||||||||||||||||||||| ||||| ||  | || | |||||| |||||||||||||||    
T  53049107 cccctaactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctct 53049042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 53808366 - 53808474
Alignment:
Q  21 cctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaacc 120  Q
    |||||||||||||||||||||| | |||||||| || || | |||||  || |||||||| |||    ||||||||| |||||||  ||||||||||| |    
T  53808366 cctaactataaagtgtctcaatctggtcccataaatcttatgtcgtttactattttggtcatctccattagtttttaacatcaaatttctaaggtgaatc 53808465  T
Q  121 atatttaaa 129  Q
    |||| ||||    
T  53808466 atatctaaa 53808474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 1301082 - 1301141
Alignment:
Q  23 taactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcct 82  Q
    |||||||||||||||||||||| ||||| ||  | ||||| ||||| |||||||||||||    
T  1301082 taactataaagtgtctcaatttggtcccttatgtcttttaccgttacctcttttggtcct 1301141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 40502285 - 40502222
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcct 82  Q
    |||||||||||||||| |||||||||| |||| ||  | |||| |||||| |||||||||||||    
T  40502285 cccctaactataaagtatctcaatttaatcccttatgtcttttgtcgttacctcttttggtcct 40502222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 5416244 - 5416306
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcc 81  Q
    |||||||||||||| ||||||||||| ||||| ||  | |||| |||||| ||||||||||||    
T  5416244 cccctaactataaaatgtctcaatttggtcccttatgtcttttgtcgttacctcttttggtcc 5416306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 8372686 - 8372652
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccata 53  Q
    |||||||||||||||||||||||||| ||||||||    
T  8372686 cccctaactataaagtgtctcaatttggtcccata 8372652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 19622051 - 19622085
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccata 53  Q
    |||||||||||||||||||||||||||||| ||||    
T  19622051 cccctaactataaagtgtctcaatttagtctcata 19622085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 29536763 - 29536825
Alignment:
Q  22 ctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctct 84  Q
    ||||||||||||||||||||||| |||||||| || || | |||||  || ||||||||||||    
T  29536763 ctaactataaagtgtctcaatttggtcccataaatcttctttcgtttactattttggtcctct 29536825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 48252979 - 48253013
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccata 53  Q
    |||||||||||||||||||||||||| ||||||||    
T  48252979 cccctaactataaagtgtctcaatttggtcccata 48253013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 51401421 - 51401387
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccata 53  Q
    |||||||||||||||||||||||||| ||||||||    
T  51401421 cccctaactataaagtgtctcaatttggtcccata 51401387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 7483550 - 7483489
Alignment:
Q  64 cgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaaccatatt 125  Q
    ||||| ||||||||||| |||  | ||||||||| |||||||  ||||||||||||||||||    
T  7483550 cgttacctcttttggtcatctccgttagtttttaacatcaaatatctaaggtgaaccatatt 7483489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 47767020 - 47766987
Alignment:
Q  20 ccctaactataaagtgtctcaatttagtcccata 53  Q
    ||||||||||||||||||||||||| ||||||||    
T  47767020 ccctaactataaagtgtctcaatttggtcccata 47766987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 48035394 - 48035329
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctct 84  Q
    |||||||||||||||||||||||||| ||||| ||  | || |  ||||| |||||||||||||||    
T  48035394 cccctaactataaagtgtctcaatttggtcccttatgtcttatgccgttacctcttttggtcctct 48035329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 53342762 - 53342822
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggt 79  Q
    |||||||||||||||||||||||||| ||||  ||  | |||| |||||| ||||||||||    
T  53342762 cccctaactataaagtgtctcaatttggtccattatgtcttttgtcgttacctcttttggt 53342822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 12852932 - 12853042
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaa 118  Q
    |||||||||||||||||||||||||| |||||||| || || |||||||  || |||||||| |||  | ||| ||||| |||||||| |||||||||||    
T  12852932 cccctaactataaagtgtctcaatttggtcccataaatcttctatcgtttactattttggtcatctccgttagattttaacatcaaaaatctaaggtgaa 12853031  T
Q  119 ccatatttaaa 129  Q
    |||||||||||    
T  12853032 ccatatttaaa 12853042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 23177720 - 23177830
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaa 118  Q
    |||||||||||||||||||||||||| |||||||| || || |  ||||  |  ||||||||||||  | ||||||||| ||| |||| |||||| ||||    
T  23177720 cccctaactataaagtgtctcaatttggtcccataaatcttctgccgtttaccattttggtcctctccgttagtttttaacataaaaaatctaagatgaa 23177819  T
Q  119 ccatatttaaa 129  Q
    |||||||||||    
T  23177820 ccatatttaaa 23177830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 23588977 - 23589087
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaa 118  Q
    |||||||||||||||||||||||||| |||||||| || || |  ||||  |  ||||||||||||  | ||||||||| ||| |||| |||||| ||||    
T  23588977 cccctaactataaagtgtctcaatttggtcccataaatcttctgccgtttaccattttggtcctctccgttagtttttaacataaaaaatctaagatgaa 23589076  T
Q  119 ccatatttaaa 129  Q
    |||||||||||    
T  23589077 ccatatttaaa 23589087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 33837825 - 33837762
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcct 82  Q
    ||||||||||||||||||||||||||| |||| ||  | |||| |||||| |||||||||||||    
T  33837825 cccctaactataaagtgtctcaatttaatcccttatgtcttttgtcgttacctcttttggtcct 33837762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 14714591 - 14714648
Alignment:
Q  72 cttttggtcctctatgatagtttttagcatcaaaactctaaggtgaaccatatttaaa 129  Q
    |||||||||||||  | ||||||||| |||||||  ||||||||||||||||||||||    
T  14714591 cttttggtcctctccgttagtttttaacatcaaatgtctaaggtgaaccatatttaaa 14714648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 12958462 - 12958502
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagatttt 59  Q
    |||||||||||||||||||||||||| |||||||| |||||    
T  12958462 cccctaactataaagtgtctcaatttggtcccataaatttt 12958502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 125
Target Start/End: Complemental strand, 41296505 - 41296418
Alignment:
Q  38 tcaatttagtcccatagattttttatcgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaaccatatt 125  Q
    ||||||| ||||| ||  |||||| ||||||||||||||||||||||  | ||||||||| || ||||  ||||| ||||| ||||||    
T  41296505 tcaatttggtcccttatgttttttgtcgttatctcttttggtcctctccgttagtttttaacaccaaatgtctaaagtgaatcatatt 41296418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 2581849 - 2581883
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccata 53  Q
    |||||||||||||||||||||||||| ||||||||    
T  2581849 cccctaactataaagtgtctcaatttggtcccata 2581883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 2305586 - 2305651
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctct 84  Q
    |||||||||||||||||||||||||| ||||| ||  | || |  ||||| |||||||||||||||    
T  2305586 cccctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtcctct 2305651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 3528330 - 3528225
Alignment:
Q  24 aactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaaccata 123  Q
    ||||||||||||| | || || ||| |||| || |||| ||||||  |||| ||||| ||| |  |||||||||  | ||||| ||||||||||||||||    
T  3528330 aactataaagtgttttaagttggtctcataaatcttttgtcgttacttcttctggtcttctctattagtttttaatagcaaaagtctaaggtgaaccata 3528231  T
Q  124 tttaaa 129  Q
    ||||||    
T  3528230 tttaaa 3528225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 4512197 - 4512258
Alignment:
Q  64 cgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaaccatatt 125  Q
    ||||| |||||||||||||||    ||||||||| |||||||  ||||||||||||||||||    
T  4512197 cgttacctcttttggtcctctccattagtttttaacatcaaatatctaaggtgaaccatatt 4512258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 26205104 - 26205169
Alignment:
Q  64 cgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaaccatatttaaa 129  Q
    ||||| ||| |||||||||||  | ||||||||| |||||||  |||||||||||||||| |||||    
T  26205104 cgttacctcgtttggtcctctccgttagtttttaacatcaaatgtctaaggtgaaccatacttaaa 26205169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 41796022 - 41795989
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccat 52  Q
    |||||||||||||||||||||||||| |||||||    
T  41796022 cccctaactataaagtgtctcaatttggtcccat 41795989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 10368455 - 10368415
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagatttt 59  Q
    ||||||||||||||||||||||||||  ||||||| |||||    
T  10368455 cccctaactataaagtgtctcaatttgatcccataaatttt 10368415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 37867802 - 37867834
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtccca 51  Q
    |||||||||||||||||||||||||| ||||||    
T  37867802 cccctaactataaagtgtctcaatttggtccca 37867834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 26056217 - 26056107
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaa 118  Q
    |||||||||||||||||||||||||| |||||||| || |||| |||||  || ||||||||||||  | ||| ||||| |||||||| ||||| |||||    
T  26056217 cccctaactataaagtgtctcaatttggtcccataaatcttttgtcgtttactattttggtcctctccgttagattttaacatcaaaagtctaaagtgaa 26056118  T
Q  119 ccatatttaaa 129  Q
    |||||||||||    
T  26056117 ccatatttaaa 26056107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 50678454 - 50678519
Alignment:
Q  64 cgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaaccatatttaaa 129  Q
    ||||| ||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||    
T  50678454 cgttacctcttttggtcctctctgttagtttttaacatcaaaactctaaggtgaaccatatttaaa 50678519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 52743046 - 52742936
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaa 118  Q
    ||||||||||||||||||||||| || ||||| ||| |||| | |||||  || || |||||||||  | ||||||||| |||||||  | |||||||||    
T  52743046 cccctaactataaagtgtctcaaattggtcccttaggttttatgtcgtttactgttatggtcctctccgttagtttttaacatcaaatgtttaaggtgaa 52742947  T
Q  119 ccatatttaaa 129  Q
    |||| ||||||    
T  52742946 ccatgtttaaa 52742936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 125
Target Start/End: Complemental strand, 30551640 - 30551553
Alignment:
Q  38 tcaatttagtcccatagattttttatcgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaaccatatt 125  Q
    ||||||| ||||| ||  |||| |||||||| ||||||||||| |||  | |||||||||||||||||  ||||| ||||||||||||    
T  30551640 tcaatttggtcccttatgttttctatcgttacctcttttggtcatctccgttagtttttagcatcaaatgtctaaagtgaaccatatt 30551553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 44977267 - 44977377
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaa 118  Q
    |||||||||||||||||||| ||  | ||||| ||  | || |  ||||| ||| ||||||| ||| || ||||||||| |||||||  |||||||||||    
T  44977267 cccctaactataaagtgtcttaaactggtcccttatgtcttctgccgttacctcatttggtcatctctgttagtttttaacatcaaatgtctaaggtgaa 44977366  T
Q  119 ccatatttaaa 129  Q
    |||||||||||    
T  44977367 ccatatttaaa 44977377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 1061374 - 1061432
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttg 77  Q
    |||| ||||||||||||||||||||| ||||| ||  |||||| |||||| ||||||||    
T  1061374 ccccaaactataaagtgtctcaatttggtcccttatgttttttgtcgttacctcttttg 1061432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 13641303 - 13641337
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccata 53  Q
    |||||||||||||||||||||||||| ||||||||    
T  13641303 cccctaactataaagtgtctcaatttggtcccata 13641337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 14169669 - 14169767
Alignment:
Q  23 taactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaacca 121  Q
    |||||||||| ||||||||||| |||||||| || |||| |||||  || |||||||| | | || ||||||||| | | |||  ||||||||||||||    
T  14169669 taactataaaatgtctcaatttggtcccataaatcttttgtcgtttactattttggtcttatctgttagtttttaaccttaaatgtctaaggtgaacca 14169767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 25786014 - 25786048
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccata 53  Q
    |||||||||||||||||||||||||| ||||||||    
T  25786014 cccctaactataaagtgtctcaatttggtcccata 25786048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 27689373 - 27689439
Alignment:
Q  63 tcgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaaccatatttaaa 129  Q
    |||||| |||||||||||||||  | ||||||||| || ||||  ||||| ||||||||||||||||    
T  27689373 tcgttacctcttttggtcctctccgttagtttttaacaccaaatgtctaaagtgaaccatatttaaa 27689439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 2236859 - 2236924
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctct 84  Q
    |||||||||||||||||||||||||| ||||| ||  | || | |||||| |||||||| ||||||    
T  2236859 cccctaactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttgatcctct 2236924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 2238044 - 2237983
Alignment:
Q  23 taactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctct 84  Q
    |||||||||||||||||||||| ||||| ||  | || | |||||| |||||||||||||||    
T  2238044 taactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctct 2237983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 35683101 - 35683166
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctct 84  Q
    |||||||||||||||||||||||||| ||||| ||  | || |  ||||| |||||||||||||||    
T  35683101 cccctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtcctct 35683166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 47411517 - 47411484
Alignment:
Q  20 ccctaactataaagtgtctcaatttagtcccata 53  Q
    ||||||||||||||||||||||||| ||||||||    
T  47411517 ccctaactataaagtgtctcaatttggtcccata 47411484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 9119851 - 9119911
Alignment:
Q  22 ctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcct 82  Q
    ||||||||||||||||||||||| ||||  ||  | |||| |||||| |||||||||||||    
T  9119851 ctaactataaagtgtctcaatttggtccgttatgtcttttgtcgttacctcttttggtcct 9119911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 49141496 - 49141456
Alignment:
Q  89 tagtttttagcatcaaaactctaaggtgaaccatatttaaa 129  Q
    ||||||||| |||||||  ||||||||||||||||||||||    
T  49141496 tagtttttaacatcaaatgtctaaggtgaaccatatttaaa 49141456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 39971 - 39861
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaa 118  Q
    ||||||| |||||||||||||||||| |||||||| || ||    | ||| ||||||||||||||| || ||||||||| |||||||| |||||||||||    
T  39971 cccctaagtataaagtgtctcaatttggtcccataaatcttcccacattacctcttttggtcctctctgttagtttttaacatcaaaagtctaaggtgaa 39872  T
Q  119 ccatatttaaa 129  Q
     ||||||||||    
T  39871 tcatatttaaa 39861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 37276309 - 37276203
Alignment:
Q  23 taactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaaccat 122  Q
    |||||||||||||||||||||| |||||||| || ||||  ||||   | | |||||||||| || ||||||||| |||||||| |||||||||||||||    
T  37276309 taactataaagtgtctcaatttggtcccataaatcttttgccgtttattatattggtcctctctgttagtttttaacatcaaaagtctaaggtgaaccat 37276210  T
Q  123 atttaaa 129  Q
    |||||||    
T  37276209 atttaaa 37276203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 6844642 - 6844580
Alignment:
Q  20 ccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcct 82  Q
    ||||||| ||||||||||||||||| ||||| ||  ||||||  |||||||||||||||||||    
T  6844642 ccctaacaataaagtgtctcaatttggtcccttatgttttttgccgttatctcttttggtcct 6844580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 14820239 - 14820273
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccata 53  Q
    |||||||||||||||||||||||||||||||||||    
T  14820239 cccctaactataaagtgtctcaatttagtcccata 14820273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 21961914 - 21961979
Alignment:
Q  64 cgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaaccatatttaaa 129  Q
    |||||||||||||||||||||  | ||||||||| |||||||  ||| ||||||||||| ||||||    
T  21961914 cgttatctcttttggtcctctccgttagtttttaacatcaaatgtcttaggtgaaccatgtttaaa 21961979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 43275797 - 43275830
Alignment:
Q  20 ccctaactataaagtgtctcaatttagtcccata 53  Q
    ||||||||||||||||||||||||||||||||||    
T  43275797 ccctaactataaagtgtctcaatttagtcccata 43275830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 29739713 - 29739673
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagatttt 59  Q
    |||||||||||||||||||||||||| |||||||| |||||    
T  29739713 cccctaactataaagtgtctcaatttggtcccataaatttt 29739673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 41867986 - 41867946
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagatttt 59  Q
    |||||||||||||||||||||||||| |||||||| |||||    
T  41867986 cccctaactataaagtgtctcaatttggtcccataaatttt 41867946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 44103315 - 44103256
Alignment:
Q  70 ctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaaccatatttaaa 129  Q
    |||||||||||||||  | ||||||||| |||||||  ||||||||||||||| ||||||    
T  44103315 ctcttttggtcctctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaa 44103256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 129
Target Start/End: Original strand, 7486127 - 7486233
Alignment:
Q  23 taactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaaccat 122  Q
    |||||||||||||  ||||||| |||||||| || ||||   |||  || ||||||||||||  | ||||||||| |||||||  ||||| |||||||||    
T  7486127 taactataaagtgcttcaatttggtcccataaatcttttgctgtttactattttggtcctctccgttagtttttaacatcaaatgtctaaagtgaaccat 7486226  T
Q  123 atttaaa 129  Q
     ||||||    
T  7486227 gtttaaa 7486233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 24068376 - 24068410
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccata 53  Q
    |||||||||||||||||||||||||| ||||||||    
T  24068376 cccctaactataaagtgtctcaatttggtcccata 24068410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 129
Target Start/End: Original strand, 36756114 - 36756220
Alignment:
Q  23 taactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaaccat 122  Q
    |||||||||||||| ||||| | ||| |||| || || | |||||  || |||||||| |||  | ||||||||| |||||||  ||||||||||| |||    
T  36756114 taactataaagtgtttcaatctggtcacataaatcttatgtcgtttactattttggtcatctccgttagtttttaacatcaaatttctaaggtgaatcat 36756213  T
Q  123 atttaaa 129  Q
    |||||||    
T  36756214 atttaaa 36756220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 38591077 - 38591043
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccata 53  Q
    |||||||||||||||||||||||||| ||||||||    
T  38591077 cccctaactataaagtgtctcaatttggtcccata 38591043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 21670155 - 21670216
Alignment:
Q  64 cgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaaccatatt 125  Q
    ||||| ||||||||||| |||  | ||||||||| |||||||  ||||||||||||||||||    
T  21670155 cgttacctcttttggtcttctccgttagtttttaacatcaaatatctaaggtgaaccatatt 21670216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 31625454 - 31625389
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctct 84  Q
    ||||||| |||||||||||||||||| |||||||| || ||||  ||||  || ||||||||||||    
T  31625454 cccctaattataaagtgtctcaatttggtcccataaatcttttgccgtttactattttggtcctct 31625389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 13363602 - 13363538
Alignment:
Q  65 gttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaaccatatttaaa 129  Q
    |||| |||||||||||||||  | ||||||||| || ||||  ||||| ||||||||||||||||    
T  13363602 gttacctcttttggtcctctccgttagtttttaacaccaaatgtctaaagtgaaccatatttaaa 13363538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1974 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold1974
Description:

Target: scaffold1974; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 698 - 588
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaa 118  Q
    ||||||||||||||||||||||||||||||||||| || || |  ||||  |  |||||||| |||  | ||||||||| ||| |||| |||||||||||    
T  698 cccctaactataaagtgtctcaatttagtcccataaatcttctgccgtttaccattttggtcatctccgttagtttttaacataaaaaatctaaggtgaa 599  T
Q  119 ccatatttaaa 129  Q
    |||||||||||    
T  598 ccatatttaaa 588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1878 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold1878
Description:

Target: scaffold1878; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 576 - 686
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaa 118  Q
    ||||||||||||||||||||||||||||||||||| || || |  ||||  |  |||||||| |||  | ||||||||| ||| |||| |||||||||||    
T  576 cccctaactataaagtgtctcaatttagtcccataaatcttctgccgtttaccattttggtcatctccgttagtttttaacataaaaaatctaaggtgaa 675  T
Q  119 ccatatttaaa 129  Q
    |||||||||||    
T  676 ccatatttaaa 686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 9548 - 9438
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaa 118  Q
    ||||||||||||||||||||||||||||||||||| || || |  ||||  |  |||||||| |||  | ||||||||| ||| |||| |||||||||||    
T  9548 cccctaactataaagtgtctcaatttagtcccataaatcttctgccgtttaccattttggtcatctccgttagtttttaacataaaaaatctaaggtgaa 9449  T
Q  119 ccatatttaaa 129  Q
    |||||||||||    
T  9448 ccatatttaaa 9438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 44302769 - 44302876
Alignment:
Q  22 ctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaacca 121  Q
    |||||||||||||||||||||||  ||||||| ||||| |  | ||| |||||||||||||||  | ||||||||| ||| ||||  ||||||||||| |    
T  44302769 ctaactataaagtgtctcaatttgatcccataaattttctgccattacctcttttggtcctctccgttagtttttaacattaaaagactaaggtgaacta 44302868  T
Q  122 tatttaaa 129  Q
    ||||||||    
T  44302869 tatttaaa 44302876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 86850 - 86959
Alignment:
Q  20 ccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaac 119  Q
    ||||||||||||||  ||||||||| |||||||| || || |  ||||  || |||||||| |||  | ||||||||| |||||||  ||||||||||||    
T  86850 ccctaactataaagcatctcaatttggtcccataaatattctgccgtttactgttttggtcttctccgttagtttttaacatcaaatgtctaaggtgaac 86949  T
Q  120 catatttaaa 129  Q
    ||| ||||||    
T  86950 catgtttaaa 86959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 29833418 - 29833483
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctct 84  Q
    ||||||| |||||| ||||||||||| ||||| || || |||| |||||| |||||||||||||||    
T  29833418 cccctaattataaaatgtctcaatttggtcccttatatcttttgtcgttacctcttttggtcctct 29833483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 50
Target Start/End: Complemental strand, 937168 - 937137
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtccc 50  Q
    ||||||||||||||||||||||||||||||||    
T  937168 cccctaactataaagtgtctcaatttagtccc 937137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 30671044 - 30671103
Alignment:
Q  23 taactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcct 82  Q
    |||||||||||||||||||||||||| | || || |||| |||||| |||||||| ||||    
T  30671044 taactataaagtgtctcaatttagtctcttatatcttttgtcgttacctcttttgatcct 30671103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 1273503 - 1273469
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccata 53  Q
    |||||||||||||||||||||||||| ||||||||    
T  1273503 cccctaactataaagtgtctcaatttggtcccata 1273469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 11094574 - 11094668
Alignment:
Q  21 cctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggt 115  Q
    |||||||||||||||||| ||||| |||| ||| ||||| |  ||||  || ||||||||||||  | ||||||||| |||||||  ||||||||    
T  11094574 cctaactataaagtgtcttaatttggtcctataaattttctgccgtttactgttttggtcctcttcgttagtttttaacatcaaatgtctaaggt 11094668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 15787572 - 15787538
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccata 53  Q
    |||||||||||||||||||||||||| ||||||||    
T  15787572 cccctaactataaagtgtctcaatttggtcccata 15787538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 33377434 - 33377400
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccata 53  Q
    |||||||||||||||||||||||||| ||||||||    
T  33377434 cccctaactataaagtgtctcaatttggtcccata 33377400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 37560369 - 37560335
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccata 53  Q
    |||||||||||||||||||||||||| ||||||||    
T  37560369 cccctaactataaagtgtctcaatttggtcccata 37560335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 43894151 - 43894261
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaa 118  Q
    |||||||||||||| ||||||||||| ||| ||||  | ||||   |||| ||||||||||| | |  | | ||||||| |||||||  ||| |||||||    
T  43894151 cccctaactataaaatgtctcaatttggtcacataactatttttctgttacctcttttggtcatatccgttggtttttaacatcaaatgtctgaggtgaa 43894250  T
Q  119 ccatatttaaa 129  Q
    |||||||||||    
T  43894251 ccatatttaaa 43894261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 49
Target Start/End: Complemental strand, 44128404 - 44128374
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcc 49  Q
    |||||||||||||||||||||||||||||||    
T  44128404 cccctaactataaagtgtctcaatttagtcc 44128374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 46796096 - 46796062
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccata 53  Q
    |||||||||||||||||||||||||| ||||||||    
T  46796096 cccctaactataaagtgtctcaatttggtcccata 46796062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 56000333 - 56000363
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcc 49  Q
    |||||||||||||||||||||||||||||||    
T  56000333 cccctaactataaagtgtctcaatttagtcc 56000363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 18802459 - 18802411
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgtt 67  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  18802459 cccctaactataaagtgtctcaatttagtcccataaattttctatcgtt 18802411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 19279682 - 19279619
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcct 82  Q
    |||||||||||||||||||||||||| |||||||| ||||||| |||||  || ||||||||||    
T  19279682 cccctaactataaagtgtctcaatttggtcccataaattttttgtcgtttactattttggtcct 19279619  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 41616670 - 41616733
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcct 82  Q
    |||||||||||||||||||||||||| ||||| ||  | |||| ||||||||||||||| ||||    
T  41616670 cccctaactataaagtgtctcaatttggtcccttatgtcttttgtcgttatctcttttgatcct 41616733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 35480254 - 35480316
Alignment:
Q  20 ccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcct 82  Q
    ||||||||||||||||||||||||||||||| ||  | ||||  ||||| |||||||||||||    
T  35480254 ccctaactataaagtgtctcaatttagtcccttatgtcttttgccgttacctcttttggtcct 35480316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 41126285 - 41126350
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctct 84  Q
    |||||||||||||||||||||||||| ||||| ||  | || | |||||| |||||||||||||||    
T  41126285 cccctaactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctct 41126350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 17288290 - 17288256
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccata 53  Q
    |||||||||||||||||||||||||| ||||||||    
T  17288290 cccctaactataaagtgtctcaatttggtcccata 17288256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 18801261 - 18801295
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccata 53  Q
    |||||||||||||||||||||||||| ||||||||    
T  18801261 cccctaactataaagtgtctcaatttggtcccata 18801295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 22746390 - 22746356
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccata 53  Q
    |||||||||||||||||||||||||| ||||||||    
T  22746390 cccctaactataaagtgtctcaatttggtcccata 22746356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 25153704 - 25153738
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccata 53  Q
    |||||||||||||||||||||||||| ||||||||    
T  25153704 cccctaactataaagtgtctcaatttggtcccata 25153738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 38001553 - 38001611
Alignment:
Q  22 ctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtc 80  Q
    ||||||||||||||| ||||||| ||||| ||  | |||| ||||||||||||||||||    
T  38001553 ctaactataaagtgtttcaatttggtcccttatgtcttttgtcgttatctcttttggtc 38001611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 24873666 - 24873633
Alignment:
Q  20 ccctaactataaagtgtctcaatttagtcccata 53  Q
    ||||||||||||||||||||||||| ||||||||    
T  24873666 ccctaactataaagtgtctcaatttggtcccata 24873633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 36673906 - 36673841
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctct 84  Q
    |||||||||||||| ||||||||||| ||||| ||  | || | |||||| |||||||||||||||    
T  36673906 cccctaactataaaatgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctct 36673841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 40926589 - 40926524
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctct 84  Q
    |||||||||||||||||||||||||| |||| ||| ||||| || ||||  |  ||||||||||||    
T  40926589 cccctaactataaagtgtctcaatttggtcctataaattttctaccgtttaccgttttggtcctct 40926524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 24495075 - 24495011
Alignment:
Q  65 gttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaaccatatttaaa 129  Q
    |||| ||| |||||||||||  | ||||||||| |||||||  ||||| ||||||||||||||||    
T  24495075 gttacctcgtttggtcctctccgttagtttttaacatcaaatgtctaaagtgaaccatatttaaa 24495011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 2138707 - 2138632
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctctatgatagttt 94  Q
    |||||||||||||||||||||||||||||||| ||  | || | |||||| ||||||||||||||| || ||||||    
T  2138707 cccctaactataaagtgtctcaatttagtcccttatgtcttctgtcgttacctcttttggtcctctctgttagttt 2138632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 28225470 - 28225532
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcc 81  Q
    |||||||||||||||||||||||||| ||||| ||  | |||| ||||||| |||||||||||    
T  28225470 cccctaactataaagtgtctcaatttggtcccttatgtcttttgtcgttatatcttttggtcc 28225532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 8447267 - 8447330
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcct 82  Q
    |||||||||||||||||||||||||| ||||| ||  | ||||  ||||| |||||||||||||    
T  8447267 cccctaactataaagtgtctcaatttggtcccttatgtcttttgccgttacctcttttggtcct 8447330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 8456071 - 8456134
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcct 82  Q
    |||||||||||||||||||||||||| ||||| ||  | ||||  ||||| |||||||||||||    
T  8456071 cccctaactataaagtgtctcaatttggtcccttatgtcttttgccgttacctcttttggtcct 8456134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 8412386 - 8412352
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccata 53  Q
    |||||||||||||||||||||||||| ||||||||    
T  8412386 cccctaactataaagtgtctcaatttggtcccata 8412352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 9927652 - 9927686
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccata 53  Q
    |||||||||||||||||||||||||| ||||||||    
T  9927652 cccctaactataaagtgtctcaatttggtcccata 9927686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 13507197 - 13507131
Alignment:
Q  63 tcgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaaccatatttaaa 129  Q
    |||||||||||| | ||| ||| || ||||||||| |||||||  | ||||||||||||||||||||    
T  13507197 tcgttatctcttctagtcatctctgttagtttttaacatcaaatgtttaaggtgaaccatatttaaa 13507131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 22299973 - 22299939
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccata 53  Q
    |||||||||||||||||||||||||| ||||||||    
T  22299973 cccctaactataaagtgtctcaatttggtcccata 22299939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 13274 - 13164
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaa 118  Q
    |||||||||||||| ||||||||||| ||||||||  | || |  ||||| ||||||||||||| |    ||| ||||| |||||||  |||||||||||    
T  13274 cccctaactataaaatgtctcaatttcgtcccataactcttcttccgttacctcttttggtcctatccattaggttttaacatcaaatgtctaaggtgaa 13175  T
Q  119 ccatatttaaa 129  Q
    |||||||||||    
T  13174 ccatatttaaa 13164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 25968 - 26030
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcc 81  Q
    |||||||||||||||||||||||||| ||||| ||  | |||| ||||||| |||||||||||    
T  25968 cccctaactataaagtgtctcaatttggtcccttatgtcttttgtcgttatatcttttggtcc 26030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 207823 - 207758
Alignment:
Q  64 cgttatctcttttggtcctctatgatagtttttagcatcaaaactctaaggtgaaccatatttaaa 129  Q
    |||||||||||||||||||||  | ||||||||| |||||||  ||| ||||||||||| ||||||    
T  207823 cgttatctcttttggtcctctccgttagtttttaacatcaaatgtcttaggtgaaccatgtttaaa 207758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 1801 - 1866
Alignment:
Q  19 cccctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcctct 84  Q
    ||||||| |||||||||||||||||| ||||| ||  | || | |||||| |||||||||||||||    
T  1801 cccctaattataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctct 1866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1827 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1827
Description:

Target: scaffold1827; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 1126 - 1066
Alignment:
Q  22 ctaactataaagtgtctcaatttagtcccatagattttttatcgttatctcttttggtcct 82  Q
    ||||||||||||||||||||||| ||||| ||  | |||||| |||| |||||||| ||||    
T  1126 ctaactataaagtgtctcaatttggtcccttatgtcttttattgttacctcttttgctcct 1066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 41024 - 41064
Alignment:
Q  89 tagtttttagcatcaaaactctaaggtgaaccatatttaaa 129  Q
    ||||||||| |||||||  ||||||||||||||||||||||    
T  41024 tagtttttaacatcaaatgtctaaggtgaaccatatttaaa 41064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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