View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9428_low_2 (Length: 659)
Name: NF9428_low_2
Description: NF9428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9428_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 579; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 29 - 644
Target Start/End: Complemental strand, 31829250 - 31828637
Alignment:
| Q |
29 |
cccaaaagataaactaacaatgcacacttagatcaccaattgcaaacaagcactccaaaatctaaagacaaaactggtgtaccaaattccttataagaca |
128 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31829250 |
cccaaaagataaactaacaacgcacacttagatcaccaattgcaaacaagcactccaaaatctaaagacaaaactggtgtaccaaattccttataagaca |
31829151 |
T |
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| Q |
129 |
cctactggtgtaccattctcacaattgattttttggattaatatccaggctcaaataatgtcaatcagactctcaagcaataccattctccacttctata |
228 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31829150 |
cctactggtgtaccattctcacaattgattttttgga---atatccaagctcaaataatgtcaatcagactctcaagcaataccattctccacttctata |
31829054 |
T |
|
| Q |
229 |
attacttccacctacatttcagattgagttggagtaaaagaatgctggaactatctcacctactccc-aatccacaataaaccttaagctatgcatcata |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31829053 |
attacttccacctacatttcagattgagttggagtaaaagaatgctggaactatctcacctactccccaatccacaataaaccttaagctatgcatcata |
31828954 |
T |
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| Q |
328 |
caacctgcaattttgctaacttccaaagctttcttcatatcctactcccgccactctcatagccacataactgtaaactatgcagaaaaatactatttaa |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31828953 |
caacctgcaattttgctaacttccaaagctttcttcatatcctaatcccgccactctcatagccacataactgtaaactatgcagaaaaatactatttaa |
31828854 |
T |
|
| Q |
428 |
accaagactaccagtccaatacgcctccaactgacacctcccattctgtcactttcaggccacctccgaaatgcacgagaccatgcaagaagcatagcca |
527 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31828853 |
accaagactaccagtccaatacgcctccaactgacacctcccattctgtcactttcaggccacctccgaaatgcaccagaccatgcaagaagcatagcca |
31828754 |
T |
|
| Q |
528 |
catctgcgagaataaccgaactccatacttttctaaattaagcagcaaaactggctcctttaccacccttcttaacctcacagcttatatcaaacccgct |
627 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31828753 |
catctgcgagaataaccgaactccatacttttctaaattaagcagcaaaactggctcctttaccacccttcttaacctcacagcttatatcaaacccgct |
31828654 |
T |
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| Q |
628 |
cctgcgcccgccctatg |
644 |
Q |
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||||||||||||||||| |
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| T |
31828653 |
cctgcgcccgccctatg |
31828637 |
T |
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