View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9428_low_21 (Length: 293)
Name: NF9428_low_21
Description: NF9428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9428_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 39850585 - 39850322
Alignment:
| Q |
14 |
tcacattttaatcatgcatatttaaatgcataataggtagactctttttaaattcatcgatttgcatttcaaatactgttaatcacttttcatatcttta |
113 |
Q |
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| T |
39850585 |
tcacattttaatcatgcatatttaaacgcataataggtagactctttttaaattcatcgatttgcatttcaaatactgttaattacttttcatatcttta |
39850486 |
T |
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| Q |
114 |
atcgattcaggattgtttagaatcaattcaattaagaccttggataacatttttgaaacaagaatacgtcttaaattgattcaagacatataggaggtat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39850485 |
atcgattcaggattgtttagaatcaattcaattaaggccttggataacatttttgaaacaagaatacgtcttaaattgattaaagacatataggaggtat |
39850386 |
T |
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| Q |
214 |
ccttaaatcgatacatgcatttgataaagccaaactacagtatcaaagtattttttaaattatc |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39850385 |
ccttaaatcgatacatgcatttgataaagccaaactacagtatcaaagtattttttaaattatc |
39850322 |
T |
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