View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9428_low_22 (Length: 290)
Name: NF9428_low_22
Description: NF9428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9428_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 3569187 - 3568924
Alignment:
| Q |
14 |
aggtcaatatcttatgaaatctatatctaagtttctattggtttgtagtatttcctttgcttctcaaaccacatatcttttagaaattcctttctttcat |
113 |
Q |
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| T |
3569187 |
aggtctatatcttgtgaaatccatatctaagtttctattggtttgtagtatttcctttatttctcaaaccacatatctttaagatattattttctttcat |
3569088 |
T |
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| Q |
114 |
tataaaatatatcaaatatccaaagtatgtgatgataatatcattaaatacgtcttccatccaataaaatttgtcaaattagatttctggataggctaat |
213 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3569087 |
tataaaatatatcaaatatccaaagtatgtaatgataatatcattaaatacgtcttccatccaataaaatttgtcaaattagatttctggataggctaat |
3568988 |
T |
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| Q |
214 |
caataatgtacaaattcatacataacggtataaaatcatgagttgaagaagagggaccatagtg |
277 |
Q |
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| T |
3568987 |
caataatgtacaaattcatacataacggtataaaatcatgagttgaagaagagggaccatagtg |
3568924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 3563539 - 3563318
Alignment:
| Q |
14 |
aggtcaatatcttatgaaatctatatctaagtttctattggtttgtagtatttcctttgcttctcaaaccacatatcttttagaaattcctttctttcat |
113 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3563539 |
aggtcaatatcttaggaaatctatatctaagtttctattggtttgtagtatttcctttgcttctcaaaccacatatcttttagaaattc--ttctttcat |
3563442 |
T |
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| Q |
114 |
tataaaatatatcaaatatccaaagtatgtgatgataatatcattaaatacgtcttccatccaataaaatttgtcaaattagatttctggataggctaat |
213 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| |
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| T |
3563441 |
tataaaatatttcaaatatccaaagtatgtgatgataatatcattaaatacgtcttccatccaataaaaattgtcaaatatgatttctagataggctaat |
3563342 |
T |
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| Q |
214 |
caataatgtacaaattcatacata |
237 |
Q |
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|||||||||||||||||||||||| |
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| T |
3563341 |
caataatgtacaaattcatacata |
3563318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 272
Target Start/End: Complemental strand, 3572220 - 3571962
Alignment:
| Q |
20 |
atatcttatgaaatctat--atctaagtttctattggtttgtagtatttcctttgcttctcaaaccacatatc-ttttagaaattcctttctttcattat |
116 |
Q |
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|||||||||||||||||| |||||| ||||||||||||| || ||| | ||||||||||||||||||||| |||| ||||| |||||| | || |
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| T |
3572220 |
atatcttatgaaatctatgtatctaactttctattggttttgagcattacagttgcttctcaaaccacatatcactttaaaaattattttcttcctttcc |
3572121 |
T |
|
| Q |
117 |
aaaatatatcaaatatccaaagtatgtgatgataatatcattaaatacgtcttccatccaataa-aatttgtcaaattagatttctggataggctaatca |
215 |
Q |
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||| |||||||||||||| | || || |||||||||||||||| | || |||||||||| | |||| ||| | ||||||||||||| | |||| |
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| T |
3572120 |
caaacatatcaaatatccacaataatatataataatatcattaaatatctttttcatccaataagagtttgccaattgtaatttctggataggatgatca |
3572021 |
T |
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| Q |
216 |
ataatgtacaaattcat--acataacggtataaaatcatgagttgaagaagagggacca |
272 |
Q |
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|||| |||||||||||| | ||||||||||| ||| || |||| ||||||||||||| |
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| T |
3572020 |
ataacgtacaaattcatgcatataacggtatataattatatgttgtagaagagggacca |
3571962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 215 - 277
Target Start/End: Original strand, 8820594 - 8820656
Alignment:
| Q |
215 |
aataatgtacaaattcatacataacggtataaaatcatgagttgaagaagagggaccatagtg |
277 |
Q |
| |
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||||| |||||||||||||| ||| |||||||||||||| |||| ||||||||||||| |||| |
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| T |
8820594 |
aataaagtacaaattcatacgtaagggtataaaatcatgtgttgtagaagagggaccagagtg |
8820656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 3575502 - 3575426
Alignment:
| Q |
14 |
aggtcaatatcttatgaaatctatatc-taagtttctattggtttgtagtatttcctttgcttctcaaaccacatat |
89 |
Q |
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||||| ||||||||||||||||||||| | | |||||||||||||| || ||| | || | ||||||||||||||| |
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| T |
3575502 |
aggtccatatcttatgaaatctatatcttgattttctattggtttggagcattacacttacatctcaaaccacatat |
3575426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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