View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9428_low_24 (Length: 278)
Name: NF9428_low_24
Description: NF9428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9428_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 143 - 273
Target Start/End: Complemental strand, 9784666 - 9784535
Alignment:
| Q |
143 |
ctcaataattggaacagattctgctttttgtagatgtaaacttttgtaggataaatcagcttatattacacaaactgatacataaaaaagtgaaaatatg |
242 |
Q |
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| T |
9784666 |
ctcaataattggaacggattctgctttgtgtagatgtaaacttttgtaggataaatcagcttatattacacaaactgatacataaaaaagtgaaaatatg |
9784567 |
T |
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| Q |
243 |
agttttttcagaaatatctccct-atgcttct |
273 |
Q |
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| T |
9784566 |
agttttttcagaaatatctccctcatgcttct |
9784535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 9784723 - 9784663
Alignment:
| Q |
22 |
atatattagagttgtcattttgatacttccatgtccataagagatggctgtggaaatctca |
82 |
Q |
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| T |
9784723 |
atatattagagttgtcattttgatagttccatgtccataagagatggctgtggaaatctca |
9784663 |
T |
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Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 20 - 139
Target Start/End: Complemental strand, 30144294 - 30144175
Alignment:
| Q |
20 |
gtatatattagagttgtcattttgatacttccatgtccataagagatggctgtggaaatctcagcctgacatgatcattatattagtttatagtttatta |
119 |
Q |
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| T |
30144294 |
gtatatattagagttgtcattttgattcttccatgtacataagagatggctgtggaaatctcagccaaacatgatcattatatttgtttatagtttatta |
30144195 |
T |
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| Q |
120 |
tgtttcatcttgttacttct |
139 |
Q |
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| T |
30144194 |
tgtttcatcttgttacttct |
30144175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 34229032 - 34229119
Alignment:
| Q |
21 |
tatatattagagttg-tcattttgatacttccatgtccataagagatggctgtggaaatctcagcctgacatgatcattatattagtt |
107 |
Q |
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| T |
34229032 |
tatatattagagtttatcatttttgtccttccatgtctataaaggatggctgtggaaatctcagcctgacataatcattatattagtt |
34229119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 981672 - 981759
Alignment:
| Q |
21 |
tatatattagagttg-tcattttgatacttccatgtccataagagatggctgtggaaatctcagcctgacatgatcattatattagtt |
107 |
Q |
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| T |
981672 |
tatatattagagtttatcatttttgtccttccatgtctataaaatatggttgtggaaatctcagcctgacatgatcattacattagtt |
981759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 28344024 - 28344103
Alignment:
| Q |
21 |
tatatattagagttg-tcattttgatacttccatgtccataagagatggctgtggaaatctcagcctgacatgatcatta |
99 |
Q |
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|||||||||||||| ||||||| | |||||||||| |||| | ||||||||||||||||||||||||||||||||||| |
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| T |
28344024 |
tatatattagagtttatcatttttgtccttccatgtctataaaatatggctgtggaaatctcagcctgacatgatcatta |
28344103 |
T |
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