View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9428_low_25 (Length: 269)
Name: NF9428_low_25
Description: NF9428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9428_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 109 - 254
Target Start/End: Original strand, 34139785 - 34139930
Alignment:
| Q |
109 |
atcaataacttctatcaagaatagtaatactaattaaagttaagcaatccataaaagtgattaaaacaaacacagtataaaattatgtcaaaagtacctg |
208 |
Q |
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| T |
34139785 |
atcaataacttctatcaagaatagtaatactaattaaagttaagcaatccataaaagtgactaaaacaaacacagtataaaattatgtcaaaagtacctg |
34139884 |
T |
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| Q |
209 |
aataataccgtcaatgttgataatgtacggatctcgggtaggtttt |
254 |
Q |
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| T |
34139885 |
aataataccgccaatgttgataatatacggatctcgggtaggtttt |
34139930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 34139675 - 34139757
Alignment:
| Q |
1 |
ccttagcgttgtgctatggctatgtaagttttgtgtacctcttgatgtggtcattcattctcaaattatcattcaaaattcta |
83 |
Q |
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| T |
34139675 |
ccttagcgttgcgctatggctatgtaagttttgcgtacctcttgatgtggtgattcattctcaaattatcattcaaaattcta |
34139757 |
T |
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