View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9428_low_26 (Length: 261)

Name: NF9428_low_26
Description: NF9428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9428_low_26
NF9428_low_26
[»] chr1 (7 HSPs)
chr1 (1-242)||(29444495-29444736)
chr1 (7-242)||(29421893-29422135)
chr1 (10-69)||(29474635-29474694)
chr1 (167-240)||(29474410-29474483)
chr1 (7-69)||(29454711-29454770)
chr1 (77-131)||(29474485-29474538)
chr1 (214-242)||(29454499-29454527)
[»] chr2 (3 HSPs)
chr2 (127-242)||(12007515-12007635)
chr2 (87-242)||(11988677-11988837)
chr2 (115-238)||(12020012-12020138)


Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 29444736 - 29444495
Alignment:
Q  1 attttcatgggtcacacaattagcattcaagtagattacttgccaatagttttttcacaagcaaacaaaaccacattaacatgcaagcatatatacaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29444736 attttcatgggtcacacaattagcattcaagtagattacttgccaatagttttttcacaagcaaacaaaaccacattaacatgcaagcatatatacaaaa 29444637  T
Q  101 tcacaaagataataaaaagtttcaacacttttgatcaccataacatataaaccattttcaatacttttacacctaaacagacatatatgcaatttttctt 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29444636 tcacaaagataataaaaagtttcaacagttttgatcaccataacatataaaccattttcaatacttttacacctaaacagacatatatgcaatttttctt 29444537  T
Q  201 tgaattacttatagcaggatcctagcaattacagaccaagtg 242  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  29444536 tgaattacttatagcaggatcctagcaattacagaccaagtg 29444495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 29421893 - 29422135
Alignment:
Q  7 atgggtcacacaattagcattcaagtagattacttgccaatagttttttcacaagcaaacaaaaccacattaacatgcaagcatatatacaaaatcacaa 106  Q
    ||||| ||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  29421893 atgggccacgcaattagcattcaagtaggttacttgccaatagttttctcacaagcaaacaaaaccatattaacatgcatgcatatatacaaaatcacaa 29421992  T
Q  107 agataataaaaagtttcaacacttttgatcacc---ataacatataaaccattttcaatactt--ttacacctaaacagacatatatgcaatttttcttt 201  Q
    |||||||||||||||||||||||||||||||||   | ||||||||| |||||||||| ||||  |||||||||||||||||||||||| ||||||||||    
T  29421993 agataataaaaagtttcaacacttttgatcaccgtaacaacatataagccattttcaacactttcttacacctaaacagacatatatgccatttttcttt 29422092  T
Q  202 gaattact--tatagcaggatcctagcaattacagaccaagtg 242  Q
    | ||||||  ||||||| |||||||| | ||||||||||||||    
T  29422093 gcattacttatatagcatgatcctagtatttacagaccaagtg 29422135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 29474694 - 29474635
Alignment:
Q  10 ggtcacacaattagcattcaagtagattacttgccaatagttttttcacaagcaaacaaa 69  Q
    |||||||||||||| | |||||||| |||||||||||||||||||||||||| |||||||    
T  29474694 ggtcacacaattagtagtcaagtaggttacttgccaatagttttttcacaagaaaacaaa 29474635  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 240
Target Start/End: Complemental strand, 29474483 - 29474410
Alignment:
Q  167 ttacacctaaacagacatatatgcaatttttctttgaattacttatagcaggatcctagcaattacagaccaag 240  Q
    ||||||||||||| ||||||| ||  ||||| |||| ||||||||||||| ||| |||||||||||| ||||||    
T  29474483 ttacacctaaacaaacatataggccgtttttgtttgcattacttatagcaagatactagcaattacaaaccaag 29474410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 29454770 - 29454711
Alignment:
Q  7 atgggtcacacaattagcattcaagtagattacttgccaatagttttttcacaagcaaacaaa 69  Q
    ||||||||||||| |||   |||||||| ||||  ||||||||||||||||||||||||||||    
T  29454770 atgggtcacacaaatag---tcaagtaggttacccgccaatagttttttcacaagcaaacaaa 29454711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 29474538 - 29474485
Alignment:
Q  77 taacatgcaagcatatatacaaaatcacaaagataataaaaagtttcaacacttt 131  Q
    ||||||||| |||||| |||||||| ||||||||| ||||| |||||||||||||    
T  29474538 taacatgcatgcatatgtacaaaattacaaagatactaaaa-gtttcaacacttt 29474485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 242
Target Start/End: Complemental strand, 29454527 - 29454499
Alignment:
Q  214 gcaggatcctagcaattacagaccaagtg 242  Q
    |||||||||||||||||||||||||||||    
T  29454527 gcaggatcctagcaattacagaccaagtg 29454499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 242
Target Start/End: Complemental strand, 12007635 - 12007515
Alignment:
Q  127 acttttgatcaccataac---atataaaccattttcaatactttt--acacctaaacagacatatatgcaatttttctttgaattacttatagcaggatc 221  Q
    |||||| |||||||||||   |||||| |||||||||| ||||||  |||||||||||||||||| ||  ||||||||||| ||| |||| ||||||||     
T  12007635 actttttatcaccataacgacatataagccattttcaacacttttttacacctaaacagacatatgtgtcatttttctttgtattgcttagagcaggatg 12007536  T
Q  222 ctagcaattacagaccaagtg 242  Q
     |  |||||||||||||||||    
T  12007535 ttttcaattacagaccaagtg 12007515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 242
Target Start/End: Complemental strand, 11988837 - 11988677
Alignment:
Q  87 gcatatatacaaaatcacaaagata-ataaaaagtttcaacacttttgatcaccataaca---tataaaccattttcaatacttt--tacacctaaacag 180  Q
    ||||||||||||||||||| ||||  | |||||   ||||||||||| |||| |||||||   |||||  ||||||||| |||||  |||||||||||||    
T  11988837 gcatatatacaaaatcacatagattgaaaaaaaaaatcaacactttttatcatcataacaacatataagtcattttcaacactttcttacacctaaacag 11988738  T
Q  181 acatatatgcaatttttctttgaattacttatagcaggatcctagcaattacagaccaagtg 242  Q
     || |||||  ||||||||||| ||| |||||| ||||| |||||||||| || ||||||||    
T  11988737 -caaatatggcatttttctttgtattgcttataacaggaacctagcaattgcataccaagtg 11988677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 238
Target Start/End: Complemental strand, 12020138 - 12020012
Alignment:
Q  115 aaaagtttcaacacttttgatcaccataac---atataaaccattttcaatacttt--tacacctaaacagacatatatgcaatttttctttgaattact 209  Q
    |||| |||||||| |||| |||||||||||   |||||| |||||||||| |||||  |||||||||||| |||||||||| || |||  ||| ||| ||    
T  12020138 aaaaatttcaacaatttttatcaccataacgacatataagccattttcaacactttcttacacctaaacaaacatatatgccatcttt--ttgtattgct 12020041  T
Q  210 tatagcaggatcctagcaattacagacca 238  Q
    |||||||||| |||| |||||| ||||||    
T  12020040 tatagcaggaacctaacaattatagacca 12020012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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