View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9428_low_28 (Length: 250)
Name: NF9428_low_28
Description: NF9428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9428_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 49920065 - 49920311
Alignment:
| Q |
1 |
attctttaaatttaaatgttgtggtaatgttccaactaattattattacattagtttgtgtgaaacttgattacataataaaaacttgcatcttcacttt |
100 |
Q |
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| T |
49920065 |
attctttaaatttaaatgttgtggtaatgttccaactaattattattacattagtttgtgtgaaacttgattacataataaaaacttgcatcttcacttt |
49920164 |
T |
|
| Q |
101 |
cgcaaccaattccttacannnnnnnatacaaattaccatgaaggggattgttggttcttttctgagtactgacacaagtgaatatataagcacaaaaatt |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49920165 |
cgcaaccaattccttacatttttttatacaaattaccatgaaggggattgttggttcttttctgagtactgacacaagtgaatatataagcacaaaaatt |
49920264 |
T |
|
| Q |
201 |
tgcaagcatactaatgataacatgcattatatttcctatgcttctcc |
247 |
Q |
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|||||||||||| ||||||||||||||||||||||| ||||| |||| |
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| T |
49920265 |
tgcaagcatacttatgataacatgcattatatttcccatgctgctcc |
49920311 |
T |
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