View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9428_low_3 (Length: 584)
Name: NF9428_low_3
Description: NF9428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9428_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 379
Target Start/End: Original strand, 7308430 - 7308802
Alignment:
| Q |
16 |
cacaaacaataacatcaaaatcactaattaattattagtcttcattcagaagctaaacagaaacaacaatacaagataatctaataaacgagtgagaaaa |
115 |
Q |
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| T |
7308430 |
cacaaacaataacatcaaaatcactaattaatcattagttttcattcagaagctaaacagaaacaacaatacaagataatctaataaa-gagtgagaaaa |
7308528 |
T |
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| Q |
116 |
gataaaatgaaaccaaaatgacaatcacaaatgagaagataaa-attttatgttgtcgttgacttgagataaattcgtataaagctccggagatacgtca |
214 |
Q |
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| T |
7308529 |
gataaaatgaaac---------aatcacaaatgagaagataaagattttatgttgttgttgacttgagataaattcgtataaagctccggagatacgtca |
7308619 |
T |
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| Q |
215 |
ttcgatcctccagatca------------------atgttgattttcttagtttccacgtcctctcttacaaaccataacatctccagctgataatccaa |
296 |
Q |
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| T |
7308620 |
ttcgatcctccagatcaatgttaggttgcatatcaatgttgattttcttagtttccacgtcctctcttacaaaccgtaacatctccagctgataatccaa |
7308719 |
T |
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| Q |
297 |
ttgagcaacgacatccttcgccagttgtttctctttatctacttcatcaatattgtccatctgaaccaactcattcattgtca |
379 |
Q |
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| T |
7308720 |
ttgagcaactacatccttcgccagttgtttctctttatctacttcatcaacattgtccatctgaaccaactcattcattgtca |
7308802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 503 - 575
Target Start/End: Original strand, 7308914 - 7308986
Alignment:
| Q |
503 |
gttcttgaggaatgaccgggttatttacaatatgctttgatttgaaagccattaaatgttccatgacctttgc |
575 |
Q |
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| T |
7308914 |
gttcttgaggaatgaccgggttatttacaatatgctgtgatttgaaagccattaaatgttccatggcctttgc |
7308986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 503 - 551
Target Start/End: Complemental strand, 6828872 - 6828824
Alignment:
| Q |
503 |
gttcttgaggaatgaccgggttatttacaatatgctttgatttgaaagc |
551 |
Q |
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| T |
6828872 |
gttcttgaggcacgaccgggttatttataagatgctgtgatttgaaagc |
6828824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 6829144 - 6829092
Alignment:
| Q |
174 |
tgacttgagataaattcgtataaagctccggagatacgtcattcgatcctcca |
226 |
Q |
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| T |
6829144 |
tgacttgagataaattcgaataaagcctcggagacacttcattctatcctcca |
6829092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 13245810 - 13245870
Alignment:
| Q |
174 |
tgacttgagataaattcgtataaagctccggagatacgtcattcgatcctccagatcaatg |
234 |
Q |
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| T |
13245810 |
tgacttgagataaatccgcataaaactccgtatatacttcattcgatcctcgagatcaatg |
13245870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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