View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9428_low_32 (Length: 240)

Name: NF9428_low_32
Description: NF9428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9428_low_32
NF9428_low_32
[»] chr3 (8 HSPs)
chr3 (49-225)||(33492604-33492780)
chr3 (13-54)||(40897025-40897066)
chr3 (1-52)||(39842699-39842751)
chr3 (1-46)||(10728869-10728915)
chr3 (1-46)||(36674400-36674446)
chr3 (1-46)||(17946221-17946266)
chr3 (1-44)||(18749462-18749506)
chr3 (13-45)||(52810311-52810343)
[»] chr5 (4 HSPs)
chr5 (177-220)||(26142176-26142219)
chr5 (1-46)||(4550526-4550572)
chr5 (1-46)||(14000374-14000420)
chr5 (1-46)||(22746188-22746234)
[»] chr2 (4 HSPs)
chr2 (1-55)||(28844438-28844493)
chr2 (1-46)||(26788676-26788722)
chr2 (13-46)||(43078567-43078600)
chr2 (1-52)||(13833694-13833746)
[»] chr8 (10 HSPs)
chr8 (1-49)||(19718150-19718199)
chr8 (13-46)||(31623586-31623619)
chr8 (1-45)||(43308548-43308593)
chr8 (13-49)||(10295663-10295699)
chr8 (1-46)||(4031527-4031573)
chr8 (1-46)||(14782404-14782450)
chr8 (1-46)||(44726079-44726125)
chr8 (15-52)||(18306245-18306282)
chr8 (13-46)||(32497374-32497407)
chr8 (1-52)||(16362081-16362133)
[»] chr7 (6 HSPs)
chr7 (1-55)||(23101174-23101229)
chr7 (1-46)||(28342232-28342278)
chr7 (1-54)||(33892520-33892574)
chr7 (1-42)||(46405700-46405742)
chr7 (1-53)||(41827192-41827245)
chr7 (1-52)||(509577-509629)
[»] scaffold0492 (2 HSPs)
scaffold0492 (1-46)||(12043-12089)
scaffold0492 (13-45)||(11998-12030)
[»] chr6 (1 HSPs)
chr6 (1-46)||(31895586-31895632)
[»] chr4 (7 HSPs)
chr4 (1-46)||(5441294-5441340)
chr4 (1-46)||(27767946-27767992)
chr4 (1-46)||(51320811-51320857)
chr4 (1-46)||(54341034-54341080)
chr4 (1-46)||(54853738-54853784)
chr4 (13-42)||(29855576-29855605)
chr4 (13-45)||(24736335-24736367)
[»] chr1 (8 HSPs)
chr1 (1-46)||(6312458-6312504)
chr1 (1-46)||(9322770-9322816)
chr1 (1-46)||(15835323-15835369)
chr1 (1-46)||(25612041-25612087)
chr1 (1-46)||(29219172-29219218)
chr1 (1-46)||(29396658-29396704)
chr1 (1-54)||(46327918-46327972)
chr1 (1-52)||(45272465-45272517)
[»] scaffold1504 (1 HSPs)
scaffold1504 (1-45)||(755-800)
[»] scaffold0543 (1 HSPs)
scaffold0543 (1-45)||(10452-10497)


Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 49 - 225
Target Start/End: Original strand, 33492604 - 33492780
Alignment:
Q  49 ctaaataagtaactaatttggtgtctaaatcaggttttggagtgtatctatttgagtatataatgtcgaaatgtacgatcagtacaaaattcagagcaac 148  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33492604 ctaagtaagtaactaatttggtttctaaatcaggttttggagtgtatctatttgagtatataatgtcgaaatgtacgataagtacaaaattcagagcaac 33492703  T
Q  149 aaatttcataagttgacagctgcgcataaaaacatatgtctttcacgatccgcatgagcatgcaaacgtgtgcttgc 225  Q
    |||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  33492704 aaatttaataagttgacagctgcgcataaaaacatctgtctttcactatccgcatgagcatgcaaacgtgtgcttgc 33492780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 40897066 - 40897025
Alignment:
Q  13 tttaaaattccatagaatcctaatccaatacatctcctaaat 54  Q
    |||||||| ||||||||||||||||||||||||| |||||||    
T  40897066 tttaaaatcccatagaatcctaatccaatacatcccctaaat 40897025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 39842699 - 39842751
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaatacatctcctaa 52  Q
    |||||||| |||||| ||||| ||||||||||||||||||||||||| |||||    
T  39842699 aattaaaaagtcttttaaaatcccatagaatcctaatccaatacatcccctaa 39842751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 10728869 - 10728915
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaatacatc 46  Q
    |||||||| |||||| ||||||||||||||| |||||||||||||||    
T  10728869 aattaaaaagtcttttaaaattccatagaatgctaatccaatacatc 10728915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 36674400 - 36674446
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaatacatc 46  Q
    |||||||| |||||| ||||| |||||||||||||||||||||||||    
T  36674400 aattaaaaagtcttttaaaatcccatagaatcctaatccaatacatc 36674446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 17946266 - 17946221
Alignment:
Q  1 aattaaaatgtctttaaaattccatagaatcctaatccaatacatc 46  Q
    |||||||| |||||| |||| | |||||||||||||||||||||||    
T  17946266 aattaaaaagtcttttaaatcctatagaatcctaatccaatacatc 17946221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 18749506 - 18749462
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaataca 44  Q
    |||||||| |||||| ||||||| |||||||||||||||||||||    
T  18749506 aattaaaaagtcttttaaaattctatagaatcctaatccaataca 18749462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 52810343 - 52810311
Alignment:
Q  13 tttaaaattccatagaatcctaatccaatacat 45  Q
    |||||||| ||||||||||||||||||||||||    
T  52810343 tttaaaatcccatagaatcctaatccaatacat 52810311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 26142176 - 26142219
Alignment:
Q  177 aaaacatatgtctttcacgatccgcatgagcatgcaaacgtgtg 220  Q
    |||||||||||||||||| ||||||||| |||||||||||||||    
T  26142176 aaaacatatgtctttcactatccgcatgcgcatgcaaacgtgtg 26142219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 4550526 - 4550572
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaatacatc 46  Q
    |||||||| |||||| ||||| |||||||||||||||||||||||||    
T  4550526 aattaaaaagtcttttaaaatcccatagaatcctaatccaatacatc 4550572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 14000374 - 14000420
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaatacatc 46  Q
    |||||||| |||||| ||||| |||||||||||||||||||||||||    
T  14000374 aattaaaaagtcttttaaaatcccatagaatcctaatccaatacatc 14000420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 22746234 - 22746188
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaatacatc 46  Q
    |||||||| |||||| ||||||| |||||||||||||||||||||||    
T  22746234 aattaaaaagtcttttaaaattctatagaatcctaatccaatacatc 22746188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 28844493 - 28844438
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaatacatctcctaaata 55  Q
    |||||||| |||||| ||||| ||||||||||||||||||||||||| ||||||||    
T  28844493 aattaaaaagtcttttaaaatcccatagaatcctaatccaatacatcccctaaata 28844438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 26788722 - 26788676
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaatacatc 46  Q
    |||||||| |||||| ||||| |||||||||||||||||||||||||    
T  26788722 aattaaaaagtcttttaaaatcccatagaatcctaatccaatacatc 26788676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 43078600 - 43078567
Alignment:
Q  13 tttaaaattccatagaatcctaatccaatacatc 46  Q
    |||||||| |||||||||||||||||||||||||    
T  43078600 tttaaaatcccatagaatcctaatccaatacatc 43078567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 13833694 - 13833746
Alignment:
Q  1 aattaaaatgtctttaaaattc-catagaatcctaatccaatacatctcctaa 52  Q
    ||||||||| ||||| ||| || |||||||||||||||||||||||| |||||    
T  13833694 aattaaaatatcttttaaaatctcatagaatcctaatccaatacatcccctaa 13833746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 19718150 - 19718199
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaatacatctcc 49  Q
    |||||||| |||||| ||||| ||||||||||||||||||||||||||||    
T  19718150 aattaaaaggtcttttaaaatcccatagaatcctaatccaatacatctcc 19718199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 31623619 - 31623586
Alignment:
Q  13 tttaaaattccatagaatcctaatccaatacatc 46  Q
    ||||||||||||||||||||||||||||||||||    
T  31623619 tttaaaattccatagaatcctaatccaatacatc 31623586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 43308548 - 43308593
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaatacat 45  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||    
T  43308548 aattaaaaagtcttttaaaattccatagaatcctaatccaatacat 43308593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 10295663 - 10295699
Alignment:
Q  13 tttaaaattccatagaatcctaatccaatacatctcc 49  Q
    |||||||| ||||||||||||||||||||||||||||    
T  10295663 tttaaaatcccatagaatcctaatccaatacatctcc 10295699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 4031527 - 4031573
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaatacatc 46  Q
    |||||||| |||||| ||||| |||||||||||||||||||||||||    
T  4031527 aattaaaaagtcttttaaaatcccatagaatcctaatccaatacatc 4031573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 14782404 - 14782450
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaatacatc 46  Q
    |||||||| |||||| ||||| |||||||||||||||||||||||||    
T  14782404 aattaaaaagtcttttaaaatcccatagaatcctaatccaatacatc 14782450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 44726079 - 44726125
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaatacatc 46  Q
    |||||||| |||||| ||||| |||||||||||||||||||||||||    
T  44726079 aattaaaaagtcttttaaaatcccatagaatcctaatccaatacatc 44726125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 18306245 - 18306282
Alignment:
Q  15 taaaattccatagaatcctaatccaatacatctcctaa 52  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  18306245 taaaattccatagaatcctaattcaatacatcccctaa 18306282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 32497407 - 32497374
Alignment:
Q  13 tttaaaattccatagaatcctaatccaatacatc 46  Q
    |||||||| |||||||||||||||||||||||||    
T  32497407 tttaaaatcccatagaatcctaatccaatacatc 32497374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 16362133 - 16362081
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaatacatctcctaa 52  Q
    |||||||| |||||| ||||| |||||||||||||||| |||||||| |||||    
T  16362133 aattaaaaagtcttttaaaatcccatagaatcctaatctaatacatcccctaa 16362081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 23101229 - 23101174
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaatacatctcctaaata 55  Q
    |||||||| |||||| ||||| ||||||||||||||||| ||||||| ||||||||    
T  23101229 aattaaaaagtcttttaaaatcccatagaatcctaatccgatacatcccctaaata 23101174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 28342278 - 28342232
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaatacatc 46  Q
    |||||||| |||||| ||||| |||||||||||||||||||||||||    
T  28342278 aattaaaaagtcttttaaaatcccatagaatcctaatccaatacatc 28342232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 33892520 - 33892574
Alignment:
Q  1 aattaaaatgtctttaaaattc-catagaatcctaatccaatacatctcctaaat 54  Q
    |||||||| |||||| ||| || |||||||||||||||||||||||| |||||||    
T  33892520 aattaaaaagtcttttaaaatctcatagaatcctaatccaatacatcccctaaat 33892574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 46405700 - 46405742
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaata 42  Q
    |||||||| |||||| |||||||||||||||||||||||||||    
T  46405700 aattaaaaagtcttttaaaattccatagaatcctaatccaata 46405742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 41827245 - 41827192
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaatacatctcctaaa 53  Q
    |||||||| |||||| ||||| ||||| ||| ||||||||||||||||||||||    
T  41827245 aattaaaaagtcttttaaaatcccataaaattctaatccaatacatctcctaaa 41827192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 509629 - 509577
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaatacatctcctaa 52  Q
    |||||||| |||||| ||||| ||||| ||||||||||||||||||| |||||    
T  509629 aattaaaaagtcttttaaaatcccataaaatcctaatccaatacatcccctaa 509577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 12043 - 12089
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaatacatc 46  Q
    |||||||| |||||| ||||| |||||||||||||||||||||||||    
T  12043 aattaaaaagtcttttaaaatcccatagaatcctaatccaatacatc 12089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 12030 - 11998
Alignment:
Q  13 tttaaaattccatagaatcctaatccaatacat 45  Q
    |||||||| ||||||||||||||||||||||||    
T  12030 tttaaaatcccatagaatcctaatccaatacat 11998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 31895632 - 31895586
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaatacatc 46  Q
    |||||||| |||||| ||||| |||||||||||||||||||||||||    
T  31895632 aattaaaaagtcttttaaaatcccatagaatcctaatccaatacatc 31895586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 5441340 - 5441294
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaatacatc 46  Q
    |||||||| |||||| ||||| |||||||||||||||||||||||||    
T  5441340 aattaaaaagtcttttaaaatcccatagaatcctaatccaatacatc 5441294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 27767992 - 27767946
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaatacatc 46  Q
    |||||||| |||||| ||||| |||||||||||||||||||||||||    
T  27767992 aattaaaaagtcttttaaaatcccatagaatcctaatccaatacatc 27767946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 51320857 - 51320811
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaatacatc 46  Q
    |||||||| |||||| |||||||| ||||||||||||||||||||||    
T  51320857 aattaaaaagtcttttaaaattccgtagaatcctaatccaatacatc 51320811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 54341080 - 54341034
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaatacatc 46  Q
    |||||||| |||||| ||||| |||||||||||||||||||||||||    
T  54341080 aattaaaaagtcttttaaaatcccatagaatcctaatccaatacatc 54341034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 54853738 - 54853784
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaatacatc 46  Q
    |||||||| |||||| ||||||||||| |||||||||||||||||||    
T  54853738 aattaaaaagtcttttaaaattccataaaatcctaatccaatacatc 54853784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 42
Target Start/End: Complemental strand, 29855605 - 29855576
Alignment:
Q  13 tttaaaattccatagaatcctaatccaata 42  Q
    ||||||||||||||||||||||||||||||    
T  29855605 tttaaaattccatagaatcctaatccaata 29855576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 24736367 - 24736335
Alignment:
Q  13 tttaaaattccatagaatcctaatccaatacat 45  Q
    ||||||||||| |||||||||||||||||||||    
T  24736367 tttaaaattccttagaatcctaatccaatacat 24736335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 6312504 - 6312458
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaatacatc 46  Q
    |||||||| |||||| ||||| |||||||||||||||||||||||||    
T  6312504 aattaaaaagtcttttaaaatcccatagaatcctaatccaatacatc 6312458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 9322770 - 9322816
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaatacatc 46  Q
    |||||||| |||||| ||||| |||||||||||||||||||||||||    
T  9322770 aattaaaaagtcttttaaaatcccatagaatcctaatccaatacatc 9322816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 15835323 - 15835369
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaatacatc 46  Q
    |||||||| |||||| ||||| |||||||||||||||||||||||||    
T  15835323 aattaaaaagtcttttaaaatcccatagaatcctaatccaatacatc 15835369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 25612087 - 25612041
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaatacatc 46  Q
    |||||||| |||||| ||||| |||||||||||||||||||||||||    
T  25612087 aattaaaaagtcttttaaaatcccatagaatcctaatccaatacatc 25612041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 29219218 - 29219172
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaatacatc 46  Q
    |||||||| |||||| ||||||||||| |||||||||||||||||||    
T  29219218 aattaaaaagtcttttaaaattccatataatcctaatccaatacatc 29219172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 29396658 - 29396704
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaatacatc 46  Q
    |||||||| |||||| ||||| |||||||||||||||||||||||||    
T  29396658 aattaaaaagtcttttaaaataccatagaatcctaatccaatacatc 29396704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 46327972 - 46327918
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaatacatctcctaaat 54  Q
    |||||||| |||||| ||||| |||||||||||||||||||| |||| |||||||    
T  46327972 aattaaaaagtcttttaaaatcccatagaatcctaatccaatgcatcccctaaat 46327918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 45272517 - 45272465
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaatacatctcctaa 52  Q
    |||||||| |||||| ||||| |||||||||| |||||||||||||| |||||    
T  45272517 aattaaaaagtcttttaaaatcccatagaatcttaatccaatacatcccctaa 45272465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1504 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1504
Description:

Target: scaffold1504; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 800 - 755
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaatacat 45  Q
    |||||||| |||||| ||||| ||||||||||||||||||||||||    
T  800 aattaaaaagtcttttaaaatcccatagaatcctaatccaatacat 755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 10497 - 10452
Alignment:
Q  1 aattaaaatgtcttt-aaaattccatagaatcctaatccaatacat 45  Q
    |||||||| |||||| ||||| ||||||||||||||||||||||||    
T  10497 aattaaaaagtcttttaaaatcccatagaatcctaatccaatacat 10452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University