View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9428_low_34 (Length: 233)
Name: NF9428_low_34
Description: NF9428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9428_low_34 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 38791262 - 38791482
Alignment:
| Q |
14 |
agattgaaaatgtgtccatgactctgatcctagttgaagttgtgggactgcgatgatgcttaaattggattgaagaacatgaattgcaaaatattgtagt |
113 |
Q |
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| T |
38791262 |
agattgaaaatgtgtccatgactctgatcctagtcgaagttgtgggactgcgatgatgcttaaattggattgaagaacataaattgcagaatattgtagt |
38791361 |
T |
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| Q |
114 |
tgagatgaacgttgagagtatggtgaagtgt-gtccttggaaagcttaagcttgttgttataaacttaattgtcgttggatgtttatgttagaaattggt |
212 |
Q |
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| T |
38791362 |
tgagatgaatgttgagagtatggtgaagtgtggtccttggaaagcttaagctagttgttataaacttaattgttgttggttgtttatgttagaaattggt |
38791461 |
T |
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| Q |
213 |
ggttgggcctaacacaacccc |
233 |
Q |
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| T |
38791462 |
ggttgggcctaacacaacccc |
38791482 |
T |
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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 20785985 - 20786033
Alignment:
| Q |
14 |
agattgaaaatgtgtccatgactctgatcctagttgaagttgtgggact |
62 |
Q |
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| T |
20785985 |
agattgaaaatgtgtccatgactccaatcctagctgaagttgtgggact |
20786033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 15046458 - 15046506
Alignment:
| Q |
14 |
agattgaaaatgtgtccatgactctgatcctagttgaagttgtgggact |
62 |
Q |
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| T |
15046458 |
agattgaaaatgtgtccatgactccaatcctagctgaagttgtgggact |
15046506 |
T |
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