View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9428_low_37 (Length: 227)
Name: NF9428_low_37
Description: NF9428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9428_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 47223835 - 47223630
Alignment:
| Q |
1 |
ggtagaaccttattcttgataaacgttaatgtcgtttgtaaatctgacccacaaatgatatcactaaaaccaagatcacaaatgatcttaaacccataca |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
47223835 |
ggtagaaccttattcttgataaacattaatgtcgtttgtaaatctgacccacaaatgatatcactaaaaccaaaatcacaaatgatcttaaacccataca |
47223736 |
T |
|
| Q |
101 |
aaatagcacgaagctcaagattgatattagtactcaaaataaagttgttgttctaatcaaatgtctaacattaaaaagactaatatattcacttgcccgt |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
47223735 |
aaatagcacgaagctcaagattgatattagtatccaaaataaagttgttgttctaataaaatgtctaacattaaaaagactaatatattcacatgctcgt |
47223636 |
T |
|
| Q |
201 |
attctc |
206 |
Q |
| |
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|||||| |
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| T |
47223635 |
attctc |
47223630 |
T |
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Back To:
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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 31795186 - 31795259
Alignment:
| Q |
43 |
tctgacccacaaatgatatcactaaaaccaagatcacaaatgatcttaaacccatacaaaatagcacgaagctc |
116 |
Q |
| |
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|||||| ||||||||||||| |||||||||||||| ||| |||| | |||||||| |||||||||||||||| |
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| T |
31795186 |
tctgactcacaaatgatatccctaaaaccaagatcccaagtgatttgtaacccataagaaatagcacgaagctc |
31795259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 17488656 - 17488613
Alignment:
| Q |
43 |
tctgacccacaaatgatatcactaaaaccaagatcacaaatgat |
86 |
Q |
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|||||| |||||||||||||||||||||||||||| ||| |||| |
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| T |
17488656 |
tctgactcacaaatgatatcactaaaaccaagatcccaagtgat |
17488613 |
T |
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