View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9428_low_4 (Length: 554)
Name: NF9428_low_4
Description: NF9428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9428_low_4 |
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| [»] scaffold0891 (2 HSPs) |
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| [»] scaffold1335 (1 HSPs) |
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| [»] scaffold2086 (1 HSPs) |
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| [»] scaffold1996 (1 HSPs) |
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Alignment Details
Target: scaffold0891 (Bit Score: 505; Significance: 0; HSPs: 2)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 19 - 539
Target Start/End: Original strand, 3988 - 4507
Alignment:
| Q |
19 |
aagagctaagagaacttgtgatggaaatgatggaaggagaaaaggaagaagaattgagacaaagtgcttggagtggaagaagaaagctagaactaatttg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3988 |
aagagctaagagaacttgtgatggaaatgatggaaggagaaaaggaagaagaattgagacaaagtgcttggagtggaagaagaaagctagaactaatttg |
4087 |
T |
|
| Q |
119 |
aggggatcatcatacaataatttccagaagtttatcaaagaggttattgataataaagctatttgaattccaaatacaagtttagtatggtctatgtatt |
218 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4088 |
aggg-atcatcatacaataatttccagaagtttatcaaagaggttattgataataaagctatttgaattccaaatacaagtttagtatggtctatgtatt |
4186 |
T |
|
| Q |
219 |
ttgttgagatgcaacatttctgttctattacttttagctaaactatttccacttcatatttatggttttattattgtaagttcttatgattgactatatg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4187 |
ttgttgagatgcaacatttctgttctattacttttagctaaactatttccacttcatatttatggttttattattttaagttcttatgattgactatatg |
4286 |
T |
|
| Q |
319 |
caatattttatggggaaaaaacacttaattaatcattatacgattgatagaaataaatagttatcataatgatcaaatgtacatatgtcttgaaaatctt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4287 |
caatattttatggggaaaaaacacttaattaatcattatacgattgatagaaataaatagttatcataatgatcaaatgtacatatgtcttgaaaatctt |
4386 |
T |
|
| Q |
419 |
ggaaacatatatttctaaaattatcttccaacacctataaatatgcaacatatgaatgtattttgtatgagcacttgattcctatagtgtttcaactatc |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4387 |
ggaaacatatatttctaaaattatcttccaacacctataaatatgcaacatatgaatgtattttgtatgagcacttgattcctatagtgttccaactatc |
4486 |
T |
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| Q |
519 |
catcactgttattctcctatg |
539 |
Q |
| |
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||||||||||||||||||||| |
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| T |
4487 |
catcactgttattctcctatg |
4507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 3614 - 3687
Alignment:
| Q |
34 |
ttgtgatggaaatgatggaaggagaaaaggaagaagaattgagaca-aagtgcttggagtggaagaagaaagct |
106 |
Q |
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|||| |||||||||||| || ||||||||| | ||||| ||||||| ||||||||||| ||||||||||||||| |
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| T |
3614 |
ttgtaatggaaatgatgaaacgagaaaagggaaaagaaatgagacacaagtgcttggaatggaagaagaaagct |
3687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 129; Significance: 2e-66; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 29 - 332
Target Start/End: Complemental strand, 35774482 - 35774168
Alignment:
| Q |
29 |
agaacttgtgatggaaatgatggaaggagaaaaggaagaagaattgagaca-aagtgcttggagtggaagaagaaagctagaa------ctaatttgagg |
121 |
Q |
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||||||||| || ||||||||||||||||||||| | ||||| ||||||| ||||||||||||||||||||||||||||||| |||||||| | |
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| T |
35774482 |
agaacttgttgtgcaaatgatggaaggagaaaagggaaaagaaatgagacacaagtgcttggagtggaagaagaaagctagaaaagctactaatttgggt |
35774383 |
T |
|
| Q |
122 |
ggatcatcatacaataatttccagaagtttatcaaagaggttattgataataaagctatttgaattccaaatacaagtttag--tatggtctatgtattt |
219 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| || || |||||||||||||| | |||||||||||| ||| |||||||||| ||||| |
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| T |
35774382 |
ggatcatcatacaataatttccagaagttaatcaaagaggttcttcatcataaagctatttgagtcccaaatacaagtctagtatatggtctatatattt |
35774283 |
T |
|
| Q |
220 |
tgttgagatg------caacatttctgttctattacttttagctaaactatttccacttcatatttatggttttattattgtaagttcttatgattgact |
313 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||||||||||| | || ||| |||||| ||| |||||||| ||| ||| |
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| T |
35774282 |
tgttgagatgcgacatcgacatttctgttctattacttttagctaaactatttccacttaa----taaggtcttattaatgttagttcttaatattaact |
35774187 |
T |
|
| Q |
314 |
atatgcaatattttatggg |
332 |
Q |
| |
|
||| |||||||||| |||| |
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| T |
35774186 |
ataagcaatattttctggg |
35774168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 30 - 163
Target Start/End: Complemental strand, 35848262 - 35848122
Alignment:
| Q |
30 |
gaacttgtgatggaaatgatggaaggagaaaaggaagaagaattgagac-aaagtgcttggagtggaagaagaaagctaga------actaatttgaggg |
122 |
Q |
| |
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|||||||||||||||||||||||||||||||| | | ||||| |||||| |||| | |||| ||||||||||||||||| | ||||||||| | | |
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| T |
35848262 |
gaacttgtgatggaaatgatggaaggagaaaaaggaaaagaaatgagacaaaagagtttggtgtggaagaagaaagctacagatgctactaatttgggag |
35848163 |
T |
|
| Q |
123 |
gatcatcatacaataatttccagaagtttatcaaagaggtt |
163 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||| |
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| T |
35848162 |
gatcatcatacaataatttccataagttaatcaaagaggtt |
35848122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 35865944 - 35865814
Alignment:
| Q |
19 |
aagagctaagagaacttgtgatggaaatgatggaaggagaaaaggaagaagaattgagac-aaagtgcttggagtggaagaagaaagctaga------ac |
111 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| | | ||||| |||||| |||| | |||| ||||||||||||||||| | || |
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| T |
35865944 |
aagagataagagaacttgtgatggaaatgatggaaggagaaaaaggaaaagaaatgagacaaaagagtttggtgtggaagaagaaagctacagatgctac |
35865845 |
T |
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| Q |
112 |
taatttgaggggatcatcatacaataatttc |
142 |
Q |
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||||||| | ||||||||||||| ||||||| |
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| T |
35865844 |
taatttgggaggatcatcatacattaatttc |
35865814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 35754369 - 35754280
Alignment:
| Q |
19 |
aagagctaagagaacttgtgatggaaatgatggaaggagaaaaggaagaagaattgagac-aaagtgcttggagtggaagaagaaagcta |
107 |
Q |
| |
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||||| ||| ||||||||| ||||||||||| |||||||||||| | || || ||| || |||| || | ||||||||||||||||||| |
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| T |
35754369 |
aagagataacagaacttgtactggaaatgatgaaaggagaaaagggaaaacaaatgaaacaaaagagcatagagtggaagaagaaagcta |
35754280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 30 - 163
Target Start/End: Original strand, 1 - 141
Alignment:
| Q |
30 |
gaacttgtgatggaaatgatggaaggagaaaaggaagaagaattgagac-aaagtgcttggagtggaagaagaaagctaga------actaatttgaggg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | | ||||| |||||| |||| | |||| ||||||||||||||||| | ||||||||| | | |
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|
| T |
1 |
gaacttgtgatggaaatgatggaaggagaaaaaggaaaagaaatgagacaaaagagtttggtgtggaagaagaaagctacagatgctactaatttgggag |
100 |
T |
|
| Q |
123 |
gatcatcatacaataatttccagaagtttatcaaagaggtt |
163 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||| |
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|
| T |
101 |
gatcatcatacaataatttccataagttaatcaaagaggtt |
141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 29 - 107
Target Start/End: Original strand, 472 - 551
Alignment:
| Q |
29 |
agaacttgtgatggaaatgatggaaggagaaaaggaagaagaattgagaca-aagtgcttggagtggaagaagaaagcta |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| | ||||| ||||||| ||||||||||| |||||||||||||||| |
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| T |
472 |
agaaattgtgatggaaatgatggaaggagaaaagggaaaagaaatgagacataagtgcttggaatggaagaagaaagcta |
551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 29 - 107
Target Start/End: Original strand, 472 - 551
Alignment:
| Q |
29 |
agaacttgtgatggaaatgatggaaggagaaaaggaagaagaattgagaca-aagtgcttggagtggaagaagaaagcta |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| | ||||| ||||||| ||||||||||| |||||||||||||||| |
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|
| T |
472 |
agaaattgtgatggaaatgatggaaggagaaaagggaaaagaaatgagacataagtgcttggaatggaagaagaaagcta |
551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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