View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9428_low_5 (Length: 477)
Name: NF9428_low_5
Description: NF9428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9428_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 15 - 458
Target Start/End: Original strand, 43357288 - 43357731
Alignment:
| Q |
15 |
caaagggtatccatcacttaaagattttgaagaaaagtgtccaccaggaggaagcaattcaatcattctttacacaacaagtttgagaggaataaggaaa |
114 |
Q |
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| T |
43357288 |
caaagggtatccatcacttaaagattttgaagaaaagtgtccaccaggaggaagcaattcaatcattctttacacaacaagtttgagaggaataaggaaa |
43357387 |
T |
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| Q |
115 |
acatttcaagattgcaacacaatccatttcttgttgagaagtttaagagtaatgtatcatgaaagagatgtgtctctggacttggaatacagacaagagt |
214 |
Q |
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| T |
43357388 |
acatttcaagattgcaacacaatccatttcttgttgagaagtttaagagtaatgtatcatgaaagagatgtgtctctggacttggaatacagacaagagt |
43357487 |
T |
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| Q |
215 |
tgtggaatatattgggagagaaagtgattcctccaaagctttttatcaaaggaagatacattggaggagctgatgaagtgtttggtttgcatgaaatggg |
314 |
Q |
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| T |
43357488 |
tgtggaatatattgggagagaaagtgattcctccaaagctttttatcagaggaagatacattggaggagctgatgaagtgtttggtttgcatgaaatggg |
43357587 |
T |
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| Q |
315 |
ttggcttggaaagattttggaaggaacaccaactgtttctagtaattgtctttgtattggttgtggcaacatgggatttaccatttgttcaacttgttgt |
414 |
Q |
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| T |
43357588 |
ttggcttggaaagattttggaaggaacaccaactgtttctagtgattgtctttgtattggttgtggcaacatgggatttaccatttgttcaacttgttgt |
43357687 |
T |
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| Q |
415 |
ggaagttgcaaagtcttcatcaacaatggtgacagtactgacac |
458 |
Q |
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| T |
43357688 |
ggaagttgcaaagtcttcatcaacaatggtgacagtactgacac |
43357731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 345
Target Start/End: Original strand, 24571097 - 24571207
Alignment:
| Q |
235 |
aaagtgattcctccaaagctttttatcaaaggaagatacattggaggagctgatgaagtgtttggtttgcatgaaatgggttggcttggaaagattttgg |
334 |
Q |
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||||||||||||| ||||||||| || | || ||| ||||||||||||| ||||||||| | | |||||||| |||| ||| |||||| || |||||| |
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| T |
24571097 |
aaagtgattcctctaaagcttttcataatagaaaggtacattggaggagttgatgaagttataagattgcatgagatggattgtcttggatagcttttgg |
24571196 |
T |
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| Q |
335 |
aaggaacacca |
345 |
Q |
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| T |
24571197 |
atggaatacca |
24571207 |
T |
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