View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9428_low_6 (Length: 433)
Name: NF9428_low_6
Description: NF9428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9428_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 223 - 392
Target Start/End: Original strand, 47798099 - 47798268
Alignment:
| Q |
223 |
tttccttctttagtaaagagacttaccaaacctctcagagatttttgtgaataaagcattataatcattgcaattagaactctttggaaaaagtcaattc |
322 |
Q |
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| T |
47798099 |
tttccttctttagtaaagggacttaccaaacctctcagagatttttgtgaataaagcattataatcattgcaattagaactctttggaaaaagacaattc |
47798198 |
T |
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| Q |
323 |
taagaacagttagatcttcagcccaccaatcaatagctggcctctggtgagaagcattggaagaactcat |
392 |
Q |
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| T |
47798199 |
taagaacagttagatcttcagcccaccaatcaatagctggcctctggtgagaagcattggaagaactcat |
47798268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 47797885 - 47798044
Alignment:
| Q |
9 |
agcataggctcttgtgtagaattgaaaaaatttgaaggtttattgttattagttttgcattgttatgtgtaatgagtttggatactgcccagcagtaggt |
108 |
Q |
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| T |
47797885 |
agcataggctcttgtgtagaattgaaaaaatttgaaggtttattgttattagttttgcattgttatgtgtaatgagtttggatactgcccagcagtaggt |
47797984 |
T |
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| Q |
109 |
tacaatcaaaatgtccaattccgagtgtgttatgtcgaaatttaatattaattttgtgcg |
168 |
Q |
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| T |
47797985 |
tacaatcaaaatgtccaattccgagtgtgttatgtcgaaatttaatattaattttgtgcg |
47798044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 9e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 286 - 392
Target Start/End: Complemental strand, 39777976 - 39777870
Alignment:
| Q |
286 |
atcattgcaattagaactctttggaaaaagtcaattctaagaacagttagatcttcagcccaccaatcaatagctggcctctggtgagaagcattggaag |
385 |
Q |
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| T |
39777976 |
atcattgcaattagaactctttggaaaaagtcaattttaagaactgttagatcttcagcccaccaatcaacagctggcctttggtgagaagcagcggaag |
39777877 |
T |
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| Q |
386 |
aactcat |
392 |
Q |
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|| |||| |
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| T |
39777876 |
aattcat |
39777870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 223 - 287
Target Start/End: Complemental strand, 39778075 - 39778011
Alignment:
| Q |
223 |
tttccttctttagtaaagagacttaccaaacctctcagagatttttgtgaataaagcattataat |
287 |
Q |
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| T |
39778075 |
tttccttctttagtaaagggacttaccaaacctctcagagatttctgtgaataaagcattataat |
39778011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 286 - 374
Target Start/End: Original strand, 5677435 - 5677523
Alignment:
| Q |
286 |
atcattgcaattagaactctttggaaaaagtcaattctaagaacagttagatcttcagcccaccaatcaatagctggcctctggtgaga |
374 |
Q |
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|||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| | |||| ||||| ||||| |
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| T |
5677435 |
atcattgctattagaactctttgaaaaaggtcaattctaagaacagttagatcttcagcccaccaatcaacaactggtctctgttgaga |
5677523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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