View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9428_low_7 (Length: 423)
Name: NF9428_low_7
Description: NF9428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9428_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 97 - 417
Target Start/End: Original strand, 8093744 - 8094066
Alignment:
| Q |
97 |
tttttggaaaaatc--gtacctacaaaatctggtatcatgcgtccgtcagaaaatctaccagaagggtacctaaagaaagtttgtccatagggaggataa |
194 |
Q |
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| T |
8093744 |
tttttggaaaaatctcgtacctacaaaatctggtatcatgcgtccgtcagaaaatctaccagaagggtacctaaagaaagtttgtccatagggaggataa |
8093843 |
T |
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| Q |
195 |
tttgcctggttaccaatggttgtattgatgtaattgttgtttccattatcaaatagtgaatctccaaatatgaatagtgcaccatgtttcttaggcaagc |
294 |
Q |
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| T |
8093844 |
tttgcctggttaccaatggttgtattgatgtaattgttgtttccattatcaaatagtgaatctccaaatatgaatagtgcaccatgtttcttaggcaagc |
8093943 |
T |
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| Q |
295 |
acttcatgatcatgctattgctaaggcagtgattaatttgcataataatacccaaacacaataccaacaaatacattaaaccccccatgtttgcaagctt |
394 |
Q |
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| T |
8093944 |
acttcatgatcatgctattgctaaggcagtgattaatttgcataataatacccaaacacaataccaacagatacattaaaccccccatgtttgcaagctt |
8094043 |
T |
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| Q |
395 |
taacttaattaatcctatgcttc |
417 |
Q |
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| T |
8094044 |
taacttaattaatcctatgcttc |
8094066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 8093476 - 8093533
Alignment:
| Q |
19 |
aaaatgtgacggaatgaaaaattatcttagactttgggagaatatgtggcaccctctc |
76 |
Q |
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| T |
8093476 |
aaaatgtgacggaatgaaaaattatcttagactttgggagaatatgtggcaccctctc |
8093533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 213 - 282
Target Start/End: Complemental strand, 11770090 - 11770021
Alignment:
| Q |
213 |
gttgtattgatgtaattgttgtttccattatcaaatagtgaatctccaaatatgaatagtgcaccatgtt |
282 |
Q |
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| T |
11770090 |
gttgtattgatatagttattgtttccaacatcaaataatgaatctccaaatataaataatgcaacatgtt |
11770021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 282
Target Start/End: Complemental strand, 11763912 - 11763765
Alignment:
| Q |
135 |
cgtccgtcagaaaatctaccagaagggtacctaaagaaagtttgtccatagggaggataatttgcctggttaccaatggttgtattgatgtaattgttgt |
234 |
Q |
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| T |
11763912 |
cgtccatcagaaaatctaccagttggatacttgaagaaggtttcaccatatggtgggtaatttgcctgattatcagtagtagtatcgataaagttattgt |
11763813 |
T |
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| Q |
235 |
ttccattatcaaatagtgaatctccaaatatgaatagtgcaccatgtt |
282 |
Q |
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| T |
11763812 |
ttccaacatcaaataatgaatctccaaatacaaataatgcaacatgtt |
11763765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 282
Target Start/End: Complemental strand, 11777473 - 11777404
Alignment:
| Q |
213 |
gttgtattgatgtaattgttgtttccattatcaaatagtgaatctccaaatatgaatagtgcaccatgtt |
282 |
Q |
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| T |
11777473 |
gttgtattgatataattattgtttccaacatcaaacaatgaatctccaaatacaaataatgcagcatgtt |
11777404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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