View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9428_low_8 (Length: 407)
Name: NF9428_low_8
Description: NF9428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9428_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 7 - 333
Target Start/End: Complemental strand, 18347090 - 18346764
Alignment:
| Q |
7 |
ttattcctcctccatagatgaaagatttcctgagattgattgattgtccagaacattcagtatatctagtaaaaacatgtttcagagcctctaagttgga |
106 |
Q |
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| T |
18347090 |
ttattcctcctccatagatgaaagatttcctgagattgattgattgtccagaacattcagtatatctagtaaaaacatgtttcagagcctctaagttgga |
18346991 |
T |
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| Q |
107 |
taacttccctttgcagaagaccatcaagttatctgcataaaaacaatgagatggaatacataaacctctagctgcaccaatcaagtctaacttaccctaa |
206 |
Q |
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| T |
18346990 |
taacttccctttgcagaaaaccatcaagtcatctgcataaaaacaatgagatggaatacagaaacctctagctacaccaatcaagtctaacttaccctga |
18346891 |
T |
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| Q |
207 |
tccacacgcaaccttgatactcttgctacaaacaaattaaggttacctaattatagatttgtatattactaaggaggtcttggtttggtcccct-ctttc |
305 |
Q |
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| T |
18346890 |
tccacaagcaa-cttgatactcttgctacaaacaaattagggttacctaattatagatttgtatattactaaggaggtcttcgtttggtcccctcctttc |
18346792 |
T |
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| Q |
306 |
ttttggtttttcatctttcttattatat |
333 |
Q |
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| T |
18346791 |
ttttggtttttcatcttttttattatat |
18346764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 229 - 333
Target Start/End: Original strand, 18348959 - 18349065
Alignment:
| Q |
229 |
ttgctacaaacaaattaaggttacctaattatagatttgtatattactaaggaggtcttggtttggtcccc--tctttcttttggtttttcatctttctt |
326 |
Q |
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| T |
18348959 |
ttgctacaaacaaattagggttacctaattatagatttgtacattactaaggaggtgttggtttggtccccctcctttcatttggtttttcaactttctt |
18349058 |
T |
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| Q |
327 |
attatat |
333 |
Q |
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||||||| |
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| T |
18349059 |
attatat |
18349065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 342 - 400
Target Start/End: Complemental strand, 18346709 - 18346653
Alignment:
| Q |
342 |
attaatacatgcattgaatctcaaataattgtcatatacattgaccaacagtattatct |
400 |
Q |
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| T |
18346709 |
attaatacatgcattgaatctcaaataattgtcatat--attgaccaacaatattatct |
18346653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 299
Target Start/End: Complemental strand, 40543851 - 40543792
Alignment:
| Q |
240 |
aaattaaggttacctaattatagatttgtatattactaaggaggtcttggtttggtcccc |
299 |
Q |
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| T |
40543851 |
aaattagggttacctaattataggtttgtaaattactagggaggtcttggtttgatcccc |
40543792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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