View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9429_1 (Length: 1011)
Name: NF9429_1
Description: NF9429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9429_1 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 570; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 25 - 637
Target Start/End: Complemental strand, 32680250 - 32679640
Alignment:
| Q |
25 |
actaatttgtctgtctttgtagtgctttggtttacattgtcagatactccctctgatccttttaataagagacaaatgagtcaatcagagttttcctcga |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
32680250 |
actaatttgtctgtctttgtagtgctttggtttacattgtcagatactccctctaatccttttaataggagacaaatgagtcaatcagagttttcctcga |
32680151 |
T |
|
| Q |
125 |
tccacgattgacaacataggttttgaaagcttctcaatcaagggaatttataccaaaatattaagactttttattgtagccctctgtgcttttttggctt |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32680150 |
tccacgattgacaacataggttttgaaagcttctcaatcaagggaatttataccaaaatattaagactttttattgtagccctctgtgcttttttggctt |
32680051 |
T |
|
| Q |
225 |
gttgatatcatgtttcgacctgctgttacttggttgtattagttttttagtgtgaactgccagaatgggaatgttgaagattaaacatgcgtgttttgta |
324 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32680050 |
gttgatatcatgtttcgacctactgttacttggttgtattagttttttagtgtgaactgccagaatgggaatgttgaagattaaacatgcgtgttttgta |
32679951 |
T |
|
| Q |
325 |
tgtgtgtgtttaacagcgagagtttgtatgaagatgaggagtttgatcattaccaaaggcaactcgctgcactacttgtatagaaggtattataattccg |
424 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32679950 |
tgt--gtgtttaacagcgagagtttgtatgaagacgaggagtttgatcattaccaaaggcaactcgctgcactacttgtatataaggtattataattccg |
32679853 |
T |
|
| Q |
425 |
ctcattatttgaactgtcatgtgttctattgaaaactgtgcgatgctatttttgcatatatggagtctctttcttcatgtagctaagctgttatgatgtg |
524 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32679852 |
ctcattatttgaactgtcatgtgttctattgaaaactgtgcgatgctatttttgcatatatggagtctctttcttcatgtagctaagctgttaggatgtg |
32679753 |
T |
|
| Q |
525 |
ttttacatgatatttgagataacaaacaagtattgttggttttcatcctttgtgggttgtacctgacttctaaaccttttcatcctttatggttgtacct |
624 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32679752 |
ttttacatgatatttaagataacaaacaagtattgttggttttcatcctttatgggttgtacctgacttctaaaccttttcatcctttatggttgtacct |
32679653 |
T |
|
| Q |
625 |
gacttctaaacct |
637 |
Q |
| |
|
||||||||||||| |
|
|
| T |
32679652 |
gacttctaaacct |
32679640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 564 - 611
Target Start/End: Complemental strand, 32679676 - 32679630
Alignment:
| Q |
564 |
ttttcatcctttgtgggttgtacctgacttctaaaccttttcatcctt |
611 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32679676 |
ttttcatcctttatgg-ttgtacctgacttctaaaccttttcatcctt |
32679630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 5e-74; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 124 - 547
Target Start/End: Original strand, 44806374 - 44806795
Alignment:
| Q |
124 |
atccacgattgacaacataggttttgaaagcttctcaatcaagggaatttataccaaaatattaagactttttattgtagccctctgtgcttttttggct |
223 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||| |||||||||||||| ||| |||||||||||| ||||||| ||| ||||||| || |
|
|
| T |
44806374 |
atccactattgacaacataggttttgaaagcttctgaattaagggaatttatacgaaatcattaagacttttccttgtagcatcgtgtccttttttcact |
44806473 |
T |
|
| Q |
224 |
tgttgatatcatgtttcgacctgctgttacttggttgtattagttttttagtgtgaact-gccagaatgggaatgtt---gaagattaaacatgcgtgtt |
319 |
Q |
| |
|
|||||||||||||||| || |||||||||| |||||||||||||||| || | | | ||||| |||||| | | ||||||||| ||||| |
|
|
| T |
44806474 |
cgttgatatcatgtttctttct-----tacttggttgaattagttttttagtgttaatttgtcggaatgaaaatgtttttggggtttaaacatgtgtgtt |
44806568 |
T |
|
| Q |
320 |
ttgtatgtgtgtgtttaacagcgagagtttgtatgaagatgaggagtttgatcattaccaaaggcaactcgctgcactacttgtatagaaggtattataa |
419 |
Q |
| |
|
| ||| ||| || ||||| ||||||||||| |||||||||||||||||||| | ||||||||||| || ||| ||||||||| |||||| | || |
|
|
| T |
44806569 |
tcttattcatgttttgaacagtgagagtttgtacgaagatgaggagtttgatcagcatcaaaggcaacttgccgcattacttgtatcaaaggtagtgta- |
44806667 |
T |
|
| Q |
420 |
ttccgctcattatttgaactgtcatgtgttctattgaaaactgtgcgatgctatttttgcatatatggagtctctttcttcatgtagctaagctgttatg |
519 |
Q |
| |
|
||| |||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||| ||| |||||||||||| ||| ||||||||||||||||| |
|
|
| T |
44806668 |
ttctgctcattatttgaattgtcacatgttctattgataactgtgcgatgctgtttttgcacatacggagtctctttcgtcaagtagctaagctgttatg |
44806767 |
T |
|
| Q |
520 |
atgtgttttacatgatatttgagataac |
547 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
44806768 |
atgtgttttacatgatatttgagataac |
44806795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 684 - 872
Target Start/End: Original strand, 44806913 - 44807101
Alignment:
| Q |
684 |
tggtttgtgttttggcatctgattttgttttgctccttaatcttaggtcttttattacttgggcgagctgaatgattcattatcctatgcctttggagct |
783 |
Q |
| |
|
|||||||| |||| | |||||||||| || ||||||| |||||||||||||||||||||||||||| ||||||| ||| ||||||||||| |||||||| |
|
|
| T |
44806913 |
tggtttgtattttagtatctgatttttcttcgctcctttatcttaggtcttttattacttgggcgagttgaatgactcactatcctatgcccttggagct |
44807012 |
T |
|
| Q |
784 |
ggtcctctgtttgatgtttcacaggattctgaatatgtccatactcttctaggtgaggattgttatttggttttattctatttaattta |
872 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
44807013 |
ggtcccctgtttgatgtttcacaggattctgactatgtccatactcttctaggtgagaattgttatttatttttattctatttaattta |
44807101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 602 - 669
Target Start/End: Original strand, 44806806 - 44806873
Alignment:
| Q |
602 |
tttcatcctttatggttgtacctgacttctaaacctatcaccggaggccttaagttttttcatatcca |
669 |
Q |
| |
|
|||||| |||| || ||||||| | |||||||||| |||||| |||| |||||||||||||||||||| |
|
|
| T |
44806806 |
tttcattctttttgattgtacccggcttctaaaccaatcaccagaggacttaagttttttcatatcca |
44806873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 142; Significance: 5e-74; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 706 - 895
Target Start/End: Original strand, 2230704 - 2230893
Alignment:
| Q |
706 |
ttttgttttgctccttaatcttaggtcttttattacttgggcgagctgaatgattcattatcctatgcctttggagctggtcctctgtttgatgtttcac |
805 |
Q |
| |
|
|||| ||| ||||||| ||||||||||||| |||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2230704 |
ttttttttcgctcctttatcttaggtctttaattacttgggcgagctgaatgactcactatcctatgcccttggagctggtcctctgtttgatgtttcac |
2230803 |
T |
|
| Q |
806 |
aggattctgaatatgtccatactcttctaggtgaggattgttatttggttttattctatttaatttaaacctgcatgcagatctttcaag |
895 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
2230804 |
aggattctgaccatgtccatactcttctaggtgagaattgttatttggttttattctatttaatttaaagctgtatgcagatctttcaag |
2230893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 434 - 600
Target Start/End: Original strand, 2230444 - 2230609
Alignment:
| Q |
434 |
tgaactgtcatgtgttctattgaaaactgtgcgatgctatttttgcatatatggagtctctttcttcatgtagctaagctgttatgatgtgttttacatg |
533 |
Q |
| |
|
|||||||||| ||||||||||| ||| | |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2230444 |
tgaactgtcacatgttctattgataaccgagcgatgctgtttttgcatatatggagtctctttcttcatgtggctaagctgttatgatgtgttttacatg |
2230543 |
T |
|
| Q |
534 |
atatttgagataacaaacaagtattgttggttttcatcctttgtgggttgtacctgacttctaaacc |
600 |
Q |
| |
|
|||||||||||| |||| || |||| | || |||||||||| | | ||||||||| |||||||||| |
|
|
| T |
2230544 |
atatttgagatagcaaataaatattttcggccttcatccttt-ttgattgtacctggcttctaaacc |
2230609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 903 - 998
Target Start/End: Original strand, 54224877 - 54224972
Alignment:
| Q |
903 |
tggatatgggttaccacttcaggacttcttgtttggagtcgatggaaagcgcttccttaatatctcttttggttcccccatcaatgagttgatgat |
998 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
54224877 |
tggatatgggttgccacttcaggacttcttgtttggagtcgatggaaagcgcttccttaatatctcttttggttcccccattaatgagttggtgat |
54224972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 603 - 682
Target Start/End: Original strand, 2230576 - 2230655
Alignment:
| Q |
603 |
ttcatcctttatggttgtacctgacttctaaacctatcaccggaggccttaagttttttcatatccacatattattattc |
682 |
Q |
| |
|
|||||||||| || ||||||||| |||||||||| |||||| ||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
2230576 |
ttcatcctttttgattgtacctggcttctaaaccaatcaccagaggccttaagtttttttatatccatatattattattc |
2230655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 1e-65; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 684 - 894
Target Start/End: Complemental strand, 28135930 - 28135719
Alignment:
| Q |
684 |
tggtttgtgttttggc-atctgattttgttttgctccttaatcttaggtcttttattacttgggcgagctgaatgattcattatcctatgcctttggagc |
782 |
Q |
| |
|
||||||||||||| | |||| ||||| ||| ||||||| ||||||||| |||||||||||||| ||||||||||| ||| ||||||||||| ||||||| |
|
|
| T |
28135930 |
tggtttgtgtttttactatctaattttttttcgctcctttatcttaggtattttattacttgggtgagctgaatgactcactatcctatgcccttggagc |
28135831 |
T |
|
| Q |
783 |
tggtcctctgtttgatgtttcacaggattctgaatatgtccatactcttctaggtgaggattgttatttggttttattctatttaatttaaacctgcatg |
882 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||| || | |||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
28135830 |
tggtcctctgtttgatgtgtcacaggattctgactatgttcatactcttctaggtgagaatcgctatttggttttattctatttaatttaaagctgtatg |
28135731 |
T |
|
| Q |
883 |
cagatctttcaa |
894 |
Q |
| |
|
|||||||||||| |
|
|
| T |
28135730 |
cagatctttcaa |
28135719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 305 - 575
Target Start/End: Complemental strand, 28136291 - 28136025
Alignment:
| Q |
305 |
ttaaacatgcgtgttttgtatgtgtgtgtttaacagcgagagtttgtatgaagatgaggagtttgatcattaccaaaggcaactcgctgcactacttgta |
404 |
Q |
| |
|
||||||||| ||| ||||||||| |||||| || || ||||||||||| ||||| |||| |||||||| ||||||||||||| || |||||||| ||| |
|
|
| T |
28136291 |
ttaaacatgtgtggtttgtatgtatgtgttaaatagtgagagtttgtacgaagaggaggcctttgatcagcaccaaaggcaacttgccgcactactcgta |
28136192 |
T |
|
| Q |
405 |
tagaaggtattataattccgctcattatttgaactgtcatgtgttctattgaaaactgtgcgatgct-atttttgcatatatggagtctctttcttcatg |
503 |
Q |
| |
|
| |||||| ||| ||| |||||||||||||||||||| |||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28136191 |
tccaaggtagtattgttctgctcattatttgaactgtcacatgttctattggtgactatgcgatgctgttttttgcatatatggagtctctttcttcatg |
28136092 |
T |
|
| Q |
504 |
tagctaagctgttatgatgtgttttacatgatatttgagataacaaacaagtattgttggttttcatccttt |
575 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
28136091 |
t-----agctgttatgatgtgttttacatgatatttgagataacaaataagtattgttggctttcatccttt |
28136025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 602 - 682
Target Start/End: Complemental strand, 28136035 - 28135955
Alignment:
| Q |
602 |
tttcatcctttatggttgtacctgacttctaaacctatcaccggaggccttaagttttttcatatccacatattattattc |
682 |
Q |
| |
|
||||||||||| | ||||||| | |||||||||| |||||| ||| ||||| |||||||||||||| |||||||||||| |
|
|
| T |
28136035 |
tttcatccttttttattgtacccggcttctaaaccaatcaccagagtccttatgttttttcatatccctatattattattc |
28135955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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