View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9429_3 (Length: 803)

Name: NF9429_3
Description: NF9429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9429_3
NF9429_3
[»] chr6 (9 HSPs)
chr6 (495-768)||(17956913-17957182)
chr6 (229-442)||(17957235-17957452)
chr6 (495-558)||(6197899-6197962)
chr6 (496-555)||(17158055-17158114)
chr6 (513-659)||(3807063-3807203)
chr6 (495-593)||(10516586-10516683)
chr6 (497-565)||(34187125-34187193)
chr6 (513-552)||(4409019-4409058)
chr6 (510-578)||(4254568-4254636)
[»] chr7 (11 HSPs)
chr7 (495-772)||(20131932-20132206)
chr7 (320-445)||(20132256-20132381)
chr7 (495-656)||(11297755-11297911)
chr7 (499-593)||(25067706-25067800)
chr7 (514-593)||(27567701-27567780)
chr7 (495-593)||(13009380-13009479)
chr7 (392-445)||(13009277-13009330)
chr7 (579-656)||(21367167-21367244)
chr7 (513-582)||(28565075-28565144)
chr7 (607-656)||(39596870-39596919)
chr7 (593-656)||(33991824-33991887)
[»] chr3 (11 HSPs)
chr3 (495-772)||(44446868-44447141)
chr3 (225-445)||(44446597-44446818)
chr3 (497-656)||(34359328-34359481)
chr3 (495-565)||(28769522-28769592)
chr3 (495-558)||(45743819-45743882)
chr3 (507-593)||(16876438-16876524)
chr3 (513-581)||(20314954-20315022)
chr3 (495-588)||(39340830-39340921)
chr3 (502-547)||(2382870-2382915)
chr3 (610-659)||(9165267-9165316)
chr3 (496-582)||(50334650-50334738)
[»] chr5 (14 HSPs)
chr5 (225-445)||(16089887-16090108)
chr5 (608-771)||(16089534-16089699)
chr5 (496-644)||(16089694-16089836)
chr5 (495-657)||(19343548-19343704)
chr5 (495-593)||(5159493-5159591)
chr5 (497-567)||(15069998-15070068)
chr5 (499-656)||(39058477-39058628)
chr5 (514-655)||(38607294-38607429)
chr5 (392-445)||(14820530-14820583)
chr5 (495-551)||(26724207-26724264)
chr5 (511-560)||(30403600-30403649)
chr5 (513-558)||(35270761-35270806)
chr5 (611-655)||(458566-458610)
chr5 (513-558)||(39146584-39146629)
[»] chr4 (7 HSPs)
chr4 (27-182)||(24060044-24060201)
chr4 (495-656)||(40390887-40391041)
chr4 (496-623)||(33609974-33610095)
chr4 (515-593)||(15025832-15025910)
chr4 (499-562)||(784109-784172)
chr4 (514-565)||(20403240-20403291)
chr4 (597-655)||(43914041-43914099)
[»] scaffold0005 (1 HSPs)
scaffold0005 (495-649)||(253762-253909)
[»] chr8 (12 HSPs)
chr8 (495-656)||(12596851-12597006)
chr8 (495-661)||(24916055-24916213)
chr8 (495-588)||(32796992-32797085)
chr8 (495-593)||(17219719-17219818)
chr8 (495-593)||(10467499-10467598)
chr8 (495-593)||(39344637-39344735)
chr8 (496-593)||(24292197-24292294)
chr8 (510-654)||(26938635-26938773)
chr8 (500-557)||(33038305-33038362)
chr8 (495-593)||(17156990-17157091)
chr8 (392-438)||(24292093-24292139)
chr8 (392-445)||(10467396-10467449)
[»] chr2 (12 HSPs)
chr2 (591-666)||(17448894-17448969)
chr2 (498-658)||(29242582-29242734)
chr2 (497-593)||(34904065-34904161)
chr2 (495-593)||(6191144-6191242)
chr2 (495-593)||(10077658-10077758)
chr2 (495-626)||(855592-855717)
chr2 (495-656)||(30641040-30641196)
chr2 (521-593)||(35954278-35954350)
chr2 (531-656)||(24490604-24490723)
chr2 (510-593)||(8794630-8794710)
chr2 (510-593)||(31994754-31994837)
chr2 (591-656)||(37284288-37284353)
[»] scaffold0233 (1 HSPs)
scaffold0233 (496-593)||(16940-17037)
[»] chr1 (5 HSPs)
chr1 (495-593)||(20985982-20986082)
chr1 (495-662)||(16545426-16545586)
chr1 (225-265)||(46384580-46384620)
chr1 (495-569)||(37470922-37470996)
chr1 (514-582)||(13392875-13392944)
[»] scaffold0036 (1 HSPs)
scaffold0036 (499-593)||(48444-48540)
[»] scaffold0020 (1 HSPs)
scaffold0020 (499-655)||(152190-152340)
[»] scaffold0720 (1 HSPs)
scaffold0720 (514-656)||(5500-5636)
[»] scaffold0478 (1 HSPs)
scaffold0478 (584-656)||(8597-8669)


Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 495 - 768
Target Start/End: Complemental strand, 17957182 - 17956913
Alignment:
Q  495 ggaggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaatta 594  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||    
T  17957182 ggaggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattaca------atta 17957089  T
Q  595 aaattttatttgaactaaacttaaaaactcataattatacagggattaaaaacatatttaactctttttactttagtaatattataaatacatgataaaa 694  Q
    |||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||| |||||||||||||||| |||||||    
T  17957088 aaattttattggaactaaacttaaaaactcataattatatagggactaaaaacatatttaactctttttattttattaatattataaatacacgataaaa 17956989  T
Q  695 ta--nnnnnnnngtgtgaatcgggtatcgtaaaatctcttaccatctcatctaaatgtttttaagtgtaaaataat 768  Q
    ||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17956988 taatttttttttgtgtgaatcgggtatcgtaaaatctcttaccatctcatctaaatgtttttaagtgtaaaataat 17956913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 229 - 442
Target Start/End: Complemental strand, 17957452 - 17957235
Alignment:
Q  229 tttaaagccatatgcttttactcttttgtttttgtttnnnnnnngagaagataaacaaattgcttcaaaataaaatcatgcaaa--gact--aatgtttc 324  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||  ||||  || ||||     
T  17957452 tttaaagccatatgcttttactcttttgtttttgtttaaaaaaagagaagataaacaaattgcttcaaaataaaatcatgcaaaaagacttaaaggtttt 17957353  T
Q  325 acgtttatacatacaaattgtaatttttatttgggttaaatacgtttttaatccttgatcaaaaataaaatatatttttagttcctataaaatcacaagc 424  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||    
T  17957352 acgtttagacatgcaaattgtaatttttatttgggttaaatacgtttttaatctttgatcaaaaataaaatatatttttagttcttataaaattacaagc 17957253  T
Q  425 tttcacatttagtcctta 442  Q
    ||||||||||||||||||    
T  17957252 tttcacatttagtcctta 17957235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 495 - 558
Target Start/End: Complemental strand, 6197962 - 6197899
Alignment:
Q  495 ggaggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaacta 558  Q
    |||||| |||| || |||||||||| |||||||||||||||| |||||||||||||||||||||    
T  6197962 ggaggaataaaagtgtccattttttctaaaaagttttcaaaatagagactattcttacaaacta 6197899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 496 - 555
Target Start/End: Original strand, 17158055 - 17158114
Alignment:
Q  496 gaggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaa 555  Q
    |||||||| | |||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  17158055 gaggactacaagtatccattttttgtaaaaagttttcaaaatagagattattcttacaaa 17158114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 513 - 659
Target Start/End: Complemental strand, 3807203 - 3807063
Alignment:
Q  513 attttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaattaaaattttatttgaactaa 612  Q
    ||||||||| |||||||||||||| || ||||||||||||||||||  | ||| |  ||||| ||      |||||| |||||||||||||    |||||    
T  3807203 attttttgttaaaagttttcaaaatagggactattcttacaaactactaaattatggaggacgaa------aattaccattaaaattttatagagactaa 3807110  T
Q  613 acttaaaaactcataattatacagggattaaaaacatatttaactct 659  Q
    || |||||||| || ||| || ||||| |||||||||||||||||||    
T  3807109 acataaaaacttatgattttatagggactaaaaacatatttaactct 3807063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 593
Target Start/End: Original strand, 10516586 - 10516683
Alignment:
Q  495 ggaggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaatt 593  Q
    ||||||||||| |||||||| |||||||||||||| |  ||| || |||||||||||||||||| |||||| |  ||| |||||||||  |||||||||    
T  10516586 ggaggactaaaagtatccatattttgtaaaaagttat-taaatagggactattcttacaaactacaatattatggagggctaaaattatcattacaatt 10516683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 497 - 565
Target Start/End: Complemental strand, 34187193 - 34187125
Alignment:
Q  497 aggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatatt 565  Q
    ||||| ||| |||| |||||||| ||| |||||||||||| ||||||||||||||| ||||| ||||||    
T  34187193 aggaccaaaagtattcattttttttaacaagttttcaaaatagagactattcttacgaactacaatatt 34187125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 513 - 552
Target Start/End: Original strand, 4409019 - 4409058
Alignment:
Q  513 attttttgtaaaaagttttcaaaacagagactattcttac 552  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  4409019 attttttgtaaaaagttttcaaaatagagactattcttac 4409058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 510 - 578
Target Start/End: Original strand, 4254568 - 4254636
Alignment:
Q  510 tccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaa 578  Q
    ||||||||||||||| |||||| |||| || || |||| |||||||||| | ||||||| |||||||||    
T  4254568 tccattttttgtaaacagtttttaaaatagggattatttttacaaactacagtatttttgaggactaaa 4254636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 188; Significance: 1e-101; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 495 - 772
Target Start/End: Complemental strand, 20132206 - 20131932
Alignment:
Q  495 ggaggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaatta 594  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||      ||||    
T  20132206 ggaggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaattataatattttttaggactaaaattaca------atta 20132113  T
Q  595 aaattttatttgaactaaacttaaaaactcataattatacagggattaaaaacatatttaactctttttactttagtaatattataaatacatgataa-- 692  Q
    ||||||||||  ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||      
T  20132112 aaattttattgaaactaaacttaaaaactcataattatatagggactaaaaacatatttaactctttttactttattaatattataaatacacgataaaa 20132013  T
Q  693 -aatannnnnnnngtgtgaatcgggtatcgtaaaatctcttaccatctcatctaaatgtttttaagtgtaaaataatatgt 772  Q
     ||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20132012 taatattttttttttgtgaatcgggtatcgtaaaatctcttaccatctcatctaaatgtttttaagtgtaaaataatatgt 20131932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 320 - 445
Target Start/End: Complemental strand, 20132381 - 20132256
Alignment:
Q  320 gtttcacgtttatacatacaaattgtaatttttatttgggttaaatacgtttttaatccttgatcaaaaataaaatatatttttagttcctataaaatca 419  Q
    |||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  20132381 gtttcacgtttaaacatataaattgtaatttttatttggattaaatacgtttttaatccttaatcaaaaataaaatatatttttagttcctataaaatta 20132282  T
Q  420 caagctttcacatttagtccttacaa 445  Q
    |||||||| ||||||||| |||||||    
T  20132281 caagctttgacatttagttcttacaa 20132256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 495 - 656
Target Start/End: Complemental strand, 11297911 - 11297755
Alignment:
Q  495 ggaggactaaaggtatccatttttt-gtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaatt 593  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||| || ||||||| |||||||||| ||||||||  ||||||||||      |||| |||    
T  11297911 ggaggactaaaagtatccattttttagtataaagttttcaaaatagggactatttttacaaactaaaatattttggaggactaaaa------ttaccatt 11297818  T
Q  594 aaaattttatttgaactaaacttaaaaactcataattatacagggattaaaaacatatttaac 656  Q
    ||||||| ||  ||||||| ||||||||||||| ||| |  ||||| ||||||||||||||||    
T  11297817 aaaatttcataggaactaagcttaaaaactcattattttgtagggaataaaaacatatttaac 11297755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 499 - 593
Target Start/End: Complemental strand, 25067800 - 25067706
Alignment:
Q  499 gactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaatt 593  Q
    ||||||| |||||||||||||||||| ||||||||||| |  ||||||| ||||||||||||||||| |  |||| ||||||||| |||| ||||    
T  25067800 gactaaaagtatccattttttgtaaacagttttcaaaataaggactatttttacaaactataatattatggaggattaaaattaccattaaaatt 25067706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 514 - 593
Target Start/End: Original strand, 27567701 - 27567780
Alignment:
Q  514 ttttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaatt 593  Q
    ||||||| ||||||||||||||| |  |||||||||||||||||| |||||| | ||||||||||||||| |||| ||||    
T  27567701 ttttttgcaaaaagttttcaaaataaggactattcttacaaactacaatattatgtaggactaaaattaccattaaaatt 27567780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 495 - 593
Target Start/End: Original strand, 13009380 - 13009479
Alignment:
Q  495 ggaggactaaaggtatcca-ttttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaatt 593  Q
    ||||||||||| |||| || |||||||||||||||| | |||| |  |||||||||||||||||| |||||| |  |||||||||||||| |||| ||||    
T  13009380 ggaggactaaaagtattcacttttttgtaaaaagttattaaaataacgactattcttacaaactacaatattatagaggactaaaattaccattaaaatt 13009479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 445
Target Start/End: Original strand, 13009277 - 13009330
Alignment:
Q  392 aaatatatttttagttcctataaaatcacaagctttcacatttagtccttacaa 445  Q
    ||||||||||||||| |||||||||| |||||||||||  |||||||| |||||    
T  13009277 aaatatatttttagtccctataaaattacaagctttcaagtttagtccctacaa 13009330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 579 - 656
Target Start/End: Complemental strand, 21367244 - 21367167
Alignment:
Q  579 attacaattacaattaaaattttatttgaactaaacttaaaaactcataattatacagggattaaaaacatatttaac 656  Q
    |||| |||||| |||||||||||||    |||||| |||||||||||||||| || ||||  ||||||||||||||||    
T  21367244 attaaaattaccattaaaattttataaagactaaatttaaaaactcataattttataggggctaaaaacatatttaac 21367167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 513 - 582
Target Start/End: Original strand, 28565075 - 28565144
Alignment:
Q  513 attttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaatta 582  Q
    |||||||||||| ||||||||||| |||||||||| ||| |||||| | |||| |  |||||||||||||    
T  28565075 attttttgtaaagagttttcaaaatagagactatttttataaactacattattataaaggactaaaatta 28565144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 607 - 656
Target Start/End: Original strand, 39596870 - 39596919
Alignment:
Q  607 aactaaacttaaaaactcataattatacagggattaaaaacatatttaac 656  Q
    |||||||||||||||||| ||||| || | ||||||||||||||||||||    
T  39596870 aactaaacttaaaaactcgtaattttataaggattaaaaacatatttaac 39596919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 593 - 656
Target Start/End: Complemental strand, 33991887 - 33991824
Alignment:
Q  593 taaaattttatttgaactaaacttaaaaactcataattatacagggattaaaaacatatttaac 656  Q
    ||||| |||||  ||| ||||||| ||||||||| ||| || ||||||||||||||||||||||    
T  33991887 taaaactttataagaattaaacttgaaaactcatgattttatagggattaaaaacatatttaac 33991824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 166; Significance: 2e-88; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 495 - 772
Target Start/End: Original strand, 44446868 - 44447141
Alignment:
Q  495 ggaggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaatta 594  Q
    ||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||    
T  44446868 ggaggactaaaagtacacattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaatt------acaatta 44446961  T
Q  595 aaattttatttgaactaaacttaaaaactcataattatacagggattaaaaacatatttaactctttttactttagtaatattataaatacatgataaaa 694  Q
    |||||||||| | | |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  44446962 aaattttattgggattaaacttaaaaactcataattatatagggactaaaaacatatttaactctttttactttattaatattataaatacacgataaaa 44447061  T
Q  695 ta--nnnnnnnngtgtgaatcgggtatcgtaaaatctcttaccatctcatctaaatgtttttaagtgtaaaataatatgt 772  Q
    ||          |||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||    
T  44447062 taatatttttttgtgtgaattgggtatcgtaaaatctcttaccatctcatctaaatggttttaaatgtaagataatatgt 44447141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 225 - 445
Target Start/End: Original strand, 44446597 - 44446818
Alignment:
Q  225 tctctttaaagccatatgcttttactcttttgtttttgtttnnnnnnngagaagataaacaaattgcttcaaaataaaatcatgcaaagact-aatgttt 323  Q
    |||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||| ||||||||||||||||||||||||| || ||||    
T  44446597 tctctttaaagccatatgcttttactcttttgtttttgtttaaaaaaagagaagataaacaaattgtttcaaaataaaatcatgcaaagacttaaggttt 44446696  T
Q  324 cacgtttatacatacaaattgtaatttttatttgggttaaatacgtttttaatccttgatcaaaaataaaatatatttttagttcctataaaatcacaag 423  Q
    |||||||| |||||||||||||||||||||||||| ||||||| ||||||| | ||||||||||||||||||||||||||| |||||||||||| |||||    
T  44446697 cacgtttagacatacaaattgtaatttttatttggattaaatatgtttttagttcttgatcaaaaataaaatatatttttaattcctataaaattacaag 44446796  T
Q  424 ctttcacatttagtccttacaa 445  Q
    ||||||| |||||| |||||||    
T  44446797 ctttcacgtttagttcttacaa 44446818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 497 - 656
Target Start/End: Complemental strand, 34359481 - 34359328
Alignment:
Q  497 aggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaattaaa 596  Q
    |||||||||  |||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||  |||| |||      |||||| ||||||    
T  34359481 aggactaaaattatccattttttgtaaaaagttttcaaaacagggaccatttttacaaactataatattttggaggaataa------aattaccattaaa 34359388  T
Q  597 attttatttgaactaaacttaaaaactcataattatacagggattaaaaacatatttaac 656  Q
    ||||||| || ||||||||||||||||||| ||| |  | ||| ||||||||||||||||    
T  34359387 attttatatggactaaacttaaaaactcatgattttgtaaggactaaaaacatatttaac 34359328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 565
Target Start/End: Original strand, 28769522 - 28769592
Alignment:
Q  495 ggaggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatatt 565  Q
    |||||| |||| ||||| ||||| ||||||||||||| |||| | ||||||||||||||||||| ||||||    
T  28769522 ggaggattaaaagtatcaattttctgtaaaaagtttttaaaataaagactattcttacaaactacaatatt 28769592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 495 - 558
Target Start/End: Complemental strand, 45743882 - 45743819
Alignment:
Q  495 ggaggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaacta 558  Q
    ||||||| ||| || |||||||||||||||||||||| |||| || ||| ||||||||||||||    
T  45743882 ggaggacaaaaagtgtccattttttgtaaaaagtttttaaaatagggaccattcttacaaacta 45743819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 507 - 593
Target Start/End: Complemental strand, 16876524 - 16876438
Alignment:
Q  507 gtatccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaatt 593  Q
    ||||| |||||||||||    |||| |||| || |||||||||||||||||| |||||| |  ||||||||||||||||||| ||||    
T  16876524 gtatcaattttttgtaatttttttttaaaatagggactattcttacaaactacaatattatggaggactaaaattacaattaaaatt 16876438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 513 - 581
Target Start/End: Complemental strand, 20315022 - 20314954
Alignment:
Q  513 attttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaatt 581  Q
    |||||||||||||| ||||||||| |||||||||| ||||||| |  |||||| |  ||||||||||||    
T  20315022 attttttgtaaaaaattttcaaaatagagactattattacaaaattcaatattatggaggactaaaatt 20314954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 39340921 - 39340830
Alignment:
Q  495 ggaggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaatta 588  Q
    ||||||||||| |||  |||||||||||||||  ||  |||| || ||||||| |||||||||| ||||||||  | |||||||||||| ||||    
T  39340921 ggaggactaaaagtacacattttttgtaaaaaaatt--aaaatagggactatttttacaaactacaatattttggatgactaaaattaccatta 39340830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 502 - 547
Target Start/End: Original strand, 2382870 - 2382915
Alignment:
Q  502 taaaggtatccattttttgtaaaaagttttcaaaacagagactatt 547  Q
    |||| |||| ||||||||||||||||||||||||| ||||| ||||    
T  2382870 taaaagtattcattttttgtaaaaagttttcaaaatagagaatatt 2382915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 610 - 659
Target Start/End: Original strand, 9165267 - 9165316
Alignment:
Q  610 taaacttaaaaactcataattatacagggattaaaaacatatttaactct 659  Q
    |||| ||||||||| |||||| | ||||||||||||| ||||||||||||    
T  9165267 taaatttaaaaactaataattttgcagggattaaaaatatatttaactct 9165316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 496 - 582
Target Start/End: Original strand, 50334650 - 50334738
Alignment:
Q  496 gaggactaaaggtatccattttttgt--aaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaatta 582  Q
    ||||||||||  ||||||||||||||  ||||||| ||||||| ||  |||| | |||||||||| ||||||||  | |||||||||||    
T  50334650 gaggactaaaaatatccattttttgtaaaaaaagtattcaaaataggaactaattttacaaactacaatattttggaagactaaaatta 50334738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 157; Significance: 5e-83; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 225 - 445
Target Start/End: Complemental strand, 16090108 - 16089887
Alignment:
Q  225 tctctttaaagccatatgcttttactcttttgtttttgtttnnnnnnngagaagataaacaaattgcttcaaaataaaatcatgcaaagact-aatgttt 323  Q
    |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||| |||||||||||||||||||||||||| || ||||    
T  16090108 tctctttaaagccatatgcttttactcttttgtttttgtttaaaaaaagagaagataaacaaattacttcaaaataaaatcatgcaaagacttaaggttt 16090009  T
Q  324 cacgtttatacatacaaattgtaatttttatttgggttaaatacgtttttaatccttgatcaaaaataaaatatatttttagttcctataaaatcacaag 423  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||     
T  16090008 cacgtttagacatacaaattgtaatttttatttgggttaaatatgtttttagtccttgatcaaaaataaaatatatttttagttcccataaaattacaaa 16089909  T
Q  424 ctttcacatttagtccttacaa 445  Q
    ||||||| ||||||||||||||    
T  16089908 ctttcacgtttagtccttacaa 16089887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 608 - 771
Target Start/End: Complemental strand, 16089699 - 16089534
Alignment:
Q  608 actaaacttaaaaactcataattatacagggattaaaaacatatttaactctttttactttagtaatattataaatacatgataaaata--nnnnnnnng 705  Q
    ||||||||||||||||||||| |||| ||||| |||||||||||||||||| |||||||||| |||||||||||||||| |||||||||          |    
T  16089699 actaaacttaaaaactcataactatatagggactaaaaacatatttaactccttttactttattaatattataaatacacgataaaataataattttttg 16089600  T
Q  706 tgtgaatcgggtatcgtaaaatctcttaccatctcatctaaatgtttttaagtgtaaaataatatg 771  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16089599 tgtgaatcgagtatcgtaaaatctcttaccatctcatctaaatgtttttaagtgtaaaataatatg 16089534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 496 - 644
Target Start/End: Complemental strand, 16089836 - 16089694
Alignment:
Q  496 gaggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaattaa 595  Q
    |||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||    
T  16089836 gaggactaaaagtacccattttttgtaaaaagttttaaaaacagagactattcttacaaactataatattttttaggactaaaattaca------attaa 16089743  T
Q  596 aattttatttgaactaaacttaaaaactcataattatacagggattaaa 644  Q
    ||||||||| | ||||||||||||||||||||| |||| ||||| ||||    
T  16089742 aattttattgggactaaacttaaaaactcataactatatagggactaaa 16089694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 495 - 657
Target Start/End: Complemental strand, 19343704 - 19343548
Alignment:
Q  495 ggaggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaatta 594  Q
    |||||||||||  |||| ||||||||||||||||||| |||| |   |||||| |||||||||| ||||||||||||||||||||||   || ||   ||    
T  19343704 ggaggactaaaattatctattttttgtaaaaagtttttaaaatatgaactatttttacaaactacaatattttttaggactaaaatt---atcac---ta 19343611  T
Q  595 aaattttatttgaactaaacttaaaaactcataattatacagggattaaaaacatatttaact 657  Q
    |||||||||    ||||||||||||||||||| ||| |  ||| | |||||||||||||||||    
T  19343610 aaattttatagagactaaacttaaaaactcatgattttgtaggtactaaaaacatatttaact 19343548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 495 - 593
Target Start/End: Original strand, 5159493 - 5159591
Alignment:
Q  495 ggaggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaatt 593  Q
    ||||||||| | ||||||||||||||| ||||||||| |||| |  ||||||| ||| ||||||||||| ||||||||| ||||||||| |||| ||||    
T  5159493 ggaggactacaagtatccattttttgttaaaagtttttaaaataaggactatttttagaaactataataatttttaggattaaaattactattaaaatt 5159591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 497 - 567
Target Start/End: Complemental strand, 15070068 - 15069998
Alignment:
Q  497 aggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatatttt 567  Q
    |||||||||  |||||||||||||||||||||||||||||  ||||||||| |||||||||| ||||||||    
T  15070068 aggactaaaaatatccattttttgtaaaaagttttcaaaatcgagactattattacaaactacaatatttt 15069998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 499 - 656
Target Start/End: Original strand, 39058477 - 39058628
Alignment:
Q  499 gactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaattaaaat 598  Q
    ||||||| || |||||| |||||||||||||||||||| |  |||||||||||||||||| ||| || |  ||||||||      |||||| ||||||||    
T  39058477 gactaaaagtgtccattgtttgtaaaaagttttcaaaataaggactattcttacaaactacaatgttatggaggactaa------aattaccattaaaat 39058570  T
Q  599 tttatttgaactaaacttaaaaactcataattatacagggattaaaaacatatttaac 656  Q
    |||||  |   ||||||||||||||  | ||| || ||||||||||||||||||||||    
T  39058571 tttataggggttaaacttaaaaacttgtgattttatagggattaaaaacatatttaac 39058628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 655
Target Start/End: Complemental strand, 38607429 - 38607294
Alignment:
Q  514 ttttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaattaaaattttatttgaactaaa 613  Q
    ||||| |||| |||||||||||| |  ||||||||| | |||||| |||||| |  |||||||||||||||||||      |||||||||   |||||||    
T  38607429 tttttggtaacaagttttcaaaataaggactattctaaaaaactacaatattatgaaggactaaaattacaatta------aaattttatagaaactaaa 38607336  T
Q  614 cttaaaaactcataattatacagggattaaaaacatatttaa 655  Q
    ||||||||||| | | | |  ||| |||||||||||||||||    
T  38607335 cttaaaaactcttgagtttttaggtattaaaaacatatttaa 38607294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 445
Target Start/End: Complemental strand, 14820583 - 14820530
Alignment:
Q  392 aaatatatttttagttcctataaaatcacaagctttcacatttagtccttacaa 445  Q
    |||||| ||||||||||||||||||||| ||| |||||  ||||||||||||||    
T  14820583 aaatatgtttttagttcctataaaatcataagttttcaagtttagtccttacaa 14820530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 495 - 551
Target Start/End: Complemental strand, 26724264 - 26724207
Alignment:
Q  495 ggaggactaaaggtatccatttttt-gtaaaaagttttcaaaacagagactattctta 551  Q
    ||||||||||| ||||||||||||| ||||||||||||||||| || |||| ||||||    
T  26724264 ggaggactaaaagtatccatttttttgtaaaaagttttcaaaatagggactgttctta 26724207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 511 - 560
Target Start/End: Original strand, 30403600 - 30403649
Alignment:
Q  511 ccattttttgtaaaaagttttcaaaacagagactattcttacaaactata 560  Q
    ||||||||||||||||||||| |||| |  ||||||||||||||||||||    
T  30403600 ccattttttgtaaaaagtttttaaaataatgactattcttacaaactata 30403649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 513 - 558
Target Start/End: Complemental strand, 35270806 - 35270761
Alignment:
Q  513 attttttgtaaaaagttttcaaaacagagactattcttacaaacta 558  Q
    ||||||||| |||||||||||||| ||||| |||||||||||||||    
T  35270806 attttttgttaaaagttttcaaaatagagattattcttacaaacta 35270761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 611 - 655
Target Start/End: Original strand, 458566 - 458610
Alignment:
Q  611 aaacttaaaaactcataattatacagggattaaaaacatatttaa 655  Q
    |||||||||| ||||||||| | ||||||||||||||||||||||    
T  458566 aaacttaaaagctcataattttgcagggattaaaaacatatttaa 458610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 513 - 558
Target Start/End: Complemental strand, 39146629 - 39146584
Alignment:
Q  513 attttttgtaaaaagttttcaaaacagagactattcttacaaacta 558  Q
    ||||||||||| ||||||||||||||  ||||||||||| ||||||    
T  39146629 attttttgtaacaagttttcaaaacaatgactattcttaaaaacta 39146584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 139; Significance: 3e-72; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 27 - 182
Target Start/End: Complemental strand, 24060201 - 24060044
Alignment:
Q  27 taaactacatatgacgtttccctctaaaaaacaatctcgatcacagataaaaatgcacacaatctgaaaaatttacgtgaacatgtcataattattataa 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24060201 taaactacatatgacgtttccctctaaaaaacaatctcgatcacagataaaaatgcacacaatctgaaaaatttacgtgaacatgtcacaattattataa 24060102  T
Q  127 agtttat--tataatttgacatattatttgatagttcttacaattgcaataattattt 182  Q
    |||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24060101 agtttattatatagtttgacatattatttgatagttcttacaattgcaataattattt 24060044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 495 - 656
Target Start/End: Complemental strand, 40391041 - 40390887
Alignment:
Q  495 ggaggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaatta 594  Q
    |||| |||||| |||| |||||||||||||| ||||| |||| ||||||||||||||||||||| |||| | |  ||||||||      |||||  ||||    
T  40391041 ggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagactattcttacaaactacaata-tatggaggactaa------aattatcatta 40390949  T
Q  595 aaattttatttgaactaaacttaaaaactcataattatacagggattaaaaacatatttaac 656  Q
    |||||||||  ||||||||||| ||||||||| ||| |  ||||| ||||||||||||||||    
T  40390948 aaattttataggaactaaacttgaaaactcatgattttgtagggactaaaaacatatttaac 40390887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 496 - 623
Target Start/End: Complemental strand, 33610095 - 33609974
Alignment:
Q  496 gaggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaattaa 595  Q
    |||||||||| |||  ||||||||| ||||||||||||||| |  ||||||||||| |||||| ||||    ||| ||  ||||||| |||||| |||||    
T  33610095 gaggactaaacgtagacattttttgcaaaaagttttcaaaataaggactattcttataaactacaata----ttatga--aaaattaaaattaccattaa 33610002  T
Q  596 aattttatttgaactaaacttaaaaact 623  Q
    ||||||||  ||||||||||||||||||    
T  33610001 aattttataagaactaaacttaaaaact 33609974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 515 - 593
Target Start/End: Complemental strand, 15025910 - 15025832
Alignment:
Q  515 tttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaatt 593  Q
    |||||||||||||||||||||| || ||||||| | |||||||||||||||||  |||| ||||||||| |||| ||||    
T  15025910 tttttgtaaaaagttttcaaaatagggactattatcacaaactataatattttagaggattaaaattaccattaaaatt 15025832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 499 - 562
Target Start/End: Original strand, 784109 - 784172
Alignment:
Q  499 gactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaactataat 562  Q
    |||||||  ||||||||||||||||||||||||||||| || || |||| ||| ||||||||||    
T  784109 gactaaaaatatccattttttgtaaaaagttttcaaaatagggattatttttagaaactataat 784172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 514 - 565
Target Start/End: Complemental strand, 20403291 - 20403240
Alignment:
Q  514 ttttttgtaaaaagttttcaaaacagagactattcttacaaactataatatt 565  Q
    |||||||||||||||||| | |  || |||||||||||||||||||||||||    
T  20403291 ttttttgtaaaaagtttttagattagggactattcttacaaactataatatt 20403240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 597 - 655
Target Start/End: Complemental strand, 43914099 - 43914041
Alignment:
Q  597 attttatttgaactaaacttaaaaactcataattatacagggattaaaaacatatttaa 655  Q
    ||||||| |||||||||||||||||||| | ||| || ||||| |||||| ||||||||    
T  43914099 attttatatgaactaaacttaaaaactcgtgattttatagggactaaaaatatatttaa 43914041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 495 - 649
Target Start/End: Original strand, 253762 - 253909
Alignment:
Q  495 ggaggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaatta 594  Q
    |||||| |||| ||||||||||||||||||||  ||| |||| ||||||||| ||||||||||||||||||||  ||||||||      |||||| ||||    
T  253762 ggaggattaaaagtatccattttttgtaaaaaagttt-aaaatagagactatccttacaaactataatattttaaaggactaa------aattactatta 253854  T
Q  595 aaattttatttgaactaaacttaaaaactcataattatacagggattaaaaacat 649  Q
    ||||||||| |||||||||||||||||||||||||| || ||| |||||||||||    
T  253855 aaattttatatgaactaaacttaaaaactcataattttataggaattaaaaacat 253909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 495 - 656
Target Start/End: Complemental strand, 12597006 - 12596851
Alignment:
Q  495 ggaggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaatta 594  Q
    |||||||||||  |||||||||||||||||| |||||||||| |||||||| | |||||||||| ||||||||  ||||||||||      |||| ||||    
T  12597006 ggaggactaaatatatccattttttgtaaaatgttttcaaaatagagactaattttacaaactacaatattttggaggactaaaa------ttaccatta 12596913  T
Q  595 aaattttatttgaactaaacttaaaaactcataattatacagggattaaaaacatatttaac 656  Q
    |||||||||  | |||||||||||||||| || ||| |  || || ||||||||||||||||    
T  12596912 aaattttatagggactaaacttaaaaacttatgattttgtagagactaaaaacatatttaac 12596851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 495 - 661
Target Start/End: Original strand, 24916055 - 24916213
Alignment:
Q  495 ggaggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaatta 594  Q
    |||||||||||  |||||||||||| |||||||||| ||||| || ||||||| |||||||||| | ||||||  ||||| |||||||| ||||          
T  24916055 ggaggactaaaaatatccattttttctaaaaagtttccaaaatag-gactatttttacaaactaca-tattttggaggacgaaaattaccatta------ 24916146  T
Q  595 aaattttatttgaactaaacttaaaaactcataattatacagggattaaaaacatatttaactcttt 661  Q
    |||||||||  | ||||||||||||||||||| ||| || | ||| |||||||||||||||| ||||    
T  24916147 aaattttatagggactaaacttaaaaactcatgattttatatggactaaaaacatatttaacccttt 24916213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 495 - 588
Target Start/End: Complemental strand, 32797085 - 32796992
Alignment:
Q  495 ggaggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaatta 588  Q
    ||||||| ||| ||||| ||||||||||||||||||| |||| |  |||||||||||||||||| |||| |||  |||||||||||||| ||||    
T  32797085 ggaggaccaaaagtatctattttttgtaaaaagtttttaaaatatggactattcttacaaactacaatactttagaggactaaaattactatta 32796992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 495 - 593
Target Start/End: Original strand, 17219719 - 17219818
Alignment:
Q  495 ggaggactaaaggtatccatttttt-gtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaatt 593  Q
    |||||||||||  |||||||||||| ||| ||||||||||||| || ||||||| |||||||||| |||||||   |||||||||||||| |||| ||||    
T  17219719 ggaggactaaaaatatccatttttttgtataaagttttcaaaatagggactatttttacaaactaaaatatttagaaggactaaaattaccattaaaatt 17219818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 495 - 593
Target Start/End: Original strand, 10467499 - 10467598
Alignment:
Q  495 ggaggactaaaggtatccatttt-ttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaatt 593  Q
    ||||||||||| || |||||||| ||||||||||||||||||| || ||||||||||||||  || |||||| |  |||| ||||||||| |||| ||||    
T  10467499 ggaggactaaaagtgtccatttttttgtaaaaagttttcaaaatagggactattcttacaagttacaatattatggaggattaaaattaccattaaaatt 10467598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 495 - 593
Target Start/End: Complemental strand, 39344735 - 39344637
Alignment:
Q  495 ggaggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaatt 593  Q
    ||||||||||| || |||| ||||| ||||| |||||||||| |   ||||||||||||||||| |||||| |  ||||||||| |||| |||| ||||    
T  39344735 ggaggactaaaagtgtccaatttttttaaaaggttttcaaaatatgaactattcttacaaactacaatattatggaggactaaagttaccattaaaatt 39344637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 496 - 593
Target Start/End: Original strand, 24292197 - 24292294
Alignment:
Q  496 gaggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaatt 593  Q
    |||||||||| ||||||||||||| ||||||  ||| |||| || |||| |||||||||||   ||| || |  ||||||||||||||||||| ||||    
T  24292197 gaggactaaaagtatccattttttataaaaatcttttaaaatagggactgttcttacaaacatcaattttatgaaggactaaaattacaattaaaatt 24292294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 510 - 654
Target Start/End: Original strand, 26938635 - 26938773
Alignment:
Q  510 tccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaattaaaattttatttgaac 609  Q
    ||||||||||  ||||||||||||||| || ||||||||||||||||||  | ||| |  ||||| ||      |||||| |||||||||||||  | ||    
T  26938635 tccattttttcaaaaaagttttcaaaatagggactattcttacaaactactaaattatggaggacaaa------aattaccattaaaattttatagggac 26938728  T
Q  610 taaacttaaaaactcataattatacagggattaaaaacatattta 654  Q
    ||||||| |||||| || ||| || ||||| ||||| ||||||||    
T  26938729 taaacttgaaaacttatgattttatagggactaaaagcatattta 26938773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 500 - 557
Target Start/End: Complemental strand, 33038362 - 33038305
Alignment:
Q  500 actaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaact 557  Q
    |||||| ||||||||||| ||||||||||||| |||| ||  ||||||||||||||||    
T  33038362 actaaaagtatccattttctgtaaaaagtttttaaaataggaactattcttacaaact 33038305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 495 - 593
Target Start/End: Original strand, 17156990 - 17157091
Alignment:
Q  495 ggaggactaaaggtatccattttttg---taaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaa 591  Q
    ||||||||||| |||||||||||||    || | ||||||||||| || | ||||| | |||||||| ||||||||  |||||||||||||| |||| ||    
T  17156990 ggaggactaaaagtatccatttttttgtatatatagttttcaaaataggggctattttaacaaactaaaatattttggaggactaaaattaccattaaaa 17157089  T
Q  592 tt 593  Q
    ||    
T  17157090 tt 17157091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 392 - 438
Target Start/End: Original strand, 24292093 - 24292139
Alignment:
Q  392 aaatatatttttagttcctataaaatcacaagctttcacatttagtc 438  Q
    ||||||||||||||| ||||||||||||||| |||||  ||||||||    
T  24292093 aaatatatttttagtccctataaaatcacaaactttcgaatttagtc 24292139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 392 - 445
Target Start/End: Original strand, 10467396 - 10467449
Alignment:
Q  392 aaatatatttttagttcctataaaatcacaagctttcacatttagtccttacaa 445  Q
    ||||||||||| ||| |||| ||||| |||||||||||  ||||||||||||||    
T  10467396 aaatatattttaagtccctaaaaaattacaagctttcaagtttagtccttacaa 10467449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 591 - 666
Target Start/End: Original strand, 17448894 - 17448969
Alignment:
Q  591 attaaaattttatttgaactaaacttaaaaactcataattatacagggattaaaaacatatttaactctttttact 666  Q
    |||||||||||||   |||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||    
T  17448894 attaaaattttataaaaactaaacttaaaaactcataattttatagggattaaaaacatatttaactcttattact 17448969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 498 - 658
Target Start/End: Original strand, 29242582 - 29242734
Alignment:
Q  498 ggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaattaaaa 597  Q
    |||||||| ||||| ||||||||||||||| |  ||||| || |||||||||||||||||||||||| ||  ||||||||      |||||| |||||||    
T  29242582 ggactaaaagtatcgattttttgtaaaaaggt--caaaatagggactattcttacaaactataatatcttcgaggactaa------aattaccattaaaa 29242673  T
Q  598 ttttatttgaactaaacttaaaaactcataattatacagggattaaaaacatatttaactc 658  Q
    ||||||  | ||||||||| ||||||| ||||| |  ||||| ||||||| ||||||||||    
T  29242674 ttttatagggactaaacttgaaaactcctaattttgtagggactaaaaacgtatttaactc 29242734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 497 - 593
Target Start/End: Complemental strand, 34904161 - 34904065
Alignment:
Q  497 aggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaatt 593  Q
    ||||||||| ||||||||| |||||||||||||||||||| || || ||||||||||||||| |||||| |  || ||||||||||  |||||||||    
T  34904161 aggactaaaagtatccattctttgtaaaaagttttcaaaatagggattattcttacaaactacaatattatgaagaactaaaattattattacaatt 34904065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 495 - 593
Target Start/End: Complemental strand, 6191242 - 6191144
Alignment:
Q  495 ggaggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaatt 593  Q
    |||| ||||||  ||| ||||||||||||||||||||||||| |  ||||||||||||||| || |||||| |  |||||||||||||| |||| ||||    
T  6191242 ggagaactaaacatattcattttttgtaaaaagttttcaaaatacggactattcttacaaagtacaatattatggaggactaaaattaccattaaaatt 6191144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 495 - 593
Target Start/End: Complemental strand, 10077758 - 10077658
Alignment:
Q  495 ggaggactaaaggtatccatttttt--gtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaat 592  Q
    |||||||||||  ||||||||||||  ||||||||||||||||| || ||||||| |||||||||| |||||| |  |||| ||||||||| |||| |||    
T  10077758 ggaggactaaaaatatccattttttttgtaaaaagttttcaaaatagggactattattacaaactacaatattatgaaggattaaaattaccattaaaat 10077659  T
Q  593 t 593  Q
    |    
T  10077658 t 10077658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 495 - 626
Target Start/End: Complemental strand, 855717 - 855592
Alignment:
Q  495 ggaggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaatta 594  Q
    |||||||||||  ||| ||||||||||||||||||||||||| |  |||||||| ||||||||| |||||     ||||||||      |||||| ||||    
T  855717 ggaggactaaaaatattcattttttgtaaaaagttttcaaaatatggactattcctacaaactacaatatcaccgaggactaa------aattaccatta 855624  T
Q  595 aaattttatttgaactaaacttaaaaactcat 626  Q
    |||||||||  | |||||||||||||||||||    
T  855623 aaattttatagggactaaacttaaaaactcat 855592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 656
Target Start/End: Original strand, 30641040 - 30641196
Alignment:
Q  495 ggaggactaaaggtatccatttttt-gtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaatt 593  Q
    ||||||| ||| ||||||||||||| ||| ||||||||||||| || ||||| | |||||||||| |||||||   |||||||||  ||    ||| |||    
T  30641040 ggaggaccaaaagtatccatttttttgtataaagttttcaaaatagggactacttttacaaactaaaatatttcggaggactaaa--ta----taccatt 30641133  T
Q  594 aaaattttatttgaactaaacttaaaaactcataattatacagggattaaaaacatatttaac 656  Q
    ||||||| || || ||||| ||||||||||||| ||  |  ||||| ||||||||||||||||    
T  30641134 aaaatttcatatggactaagcttaaaaactcatgatattgtagggactaaaaacatatttaac 30641196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 521 - 593
Target Start/End: Complemental strand, 35954350 - 35954278
Alignment:
Q  521 taaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaatt 593  Q
    ||||||| ||| | || ||||||||||||||||||||| |||||| || |||||||||||||| |||| ||||    
T  35954350 taaaaagattttataatagagactattcttacaaactacaatattattgaggactaaaattaccattaaaatt 35954278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 531 - 656
Target Start/End: Original strand, 24490604 - 24490723
Alignment:
Q  531 tcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaattaaaattttatttgaactaaacttaaaaactcataatt 630  Q
    |||||| || || ||||||||||||||| |||||| |  |||||||||||||| ||||      |||||||||    ||||||||||||||| |||||||    
T  24490604 tcaaaatagggattattcttacaaactacaatattgtagaggactaaaattactatta------aaattttatagagactaaacttaaaaacacataatt 24490697  T
Q  631 atacagggattaaaaacatatttaac 656  Q
     |  ||||| ||||||||||||||||    
T  24490698 ttgtagggactaaaaacatatttaac 24490723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 510 - 593
Target Start/End: Complemental strand, 8794710 - 8794630
Alignment:
Q  510 tccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaatt 593  Q
    |||||||||||||||||||||| |||| || |||||||||||| || || |||||| |   ||||||||||||| |||| ||||    
T  8794710 tccattttttgtaaaaagtttttaaaatagggactattcttacgaattacaatattat---ggactaaaattaccattaaaatt 8794630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 510 - 593
Target Start/End: Original strand, 31994754 - 31994837
Alignment:
Q  510 tccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaatt 593  Q
    ||||||||||  |||||||||||||||  | ||||||||||||||| || |||||| |  || ||||||||||| |||| ||||    
T  31994754 tccattttttaaaaaaagttttcaaaattgggactattcttacaaattacaatattatggagaactaaaattactattaaaatt 31994837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 591 - 656
Target Start/End: Original strand, 37284288 - 37284353
Alignment:
Q  591 attaaaattttatttgaactaaacttaaaaactcataattatacagggattaaaaacatatttaac 656  Q
    |||||||||||||  | ||||||||||||||||||||||| |  | ||| |||||| |||||||||    
T  37284288 attaaaattttatagggactaaacttaaaaactcataattttgtaaggactaaaaatatatttaac 37284353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 496 - 593
Target Start/End: Original strand, 16940 - 17037
Alignment:
Q  496 gaggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaatt 593  Q
    ||||||||||||||| ||||||| |||||| |||||||||| || ||||||||||||||| |   ||||||| ||||||||||||||| |||| ||||    
T  16940 gaggactaaaggtatacatttttagtaaaacgttttcaaaatagggactattcttacaaattgctatattttgtaggactaaaattaccattaaaatt 17037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 8e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 495 - 593
Target Start/End: Complemental strand, 20986082 - 20985982
Alignment:
Q  495 ggaggactaaaggtatccatttttt--gtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaat 592  Q
    ||||||||||| ||||| |||||||  ||||||||||||||||| || |||||||||| ||||||| ||||||||  | |||||||||||| |||| |||    
T  20986082 ggaggactaaaagtatctattttttttgtaaaaagttttcaaaatagggactattcttgcaaactacaatattttagaagactaaaattaccattaaaat 20985983  T
Q  593 t 593  Q
    |    
T  20985982 t 20985982  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 495 - 662
Target Start/End: Original strand, 16545426 - 16545586
Alignment:
Q  495 ggaggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaatta 594  Q
    |||||||||||  ||||||||||||||| ||||||||||||| || ||| ||| ||| |||||| ||||||||  |||| |||| |||  ||||          
T  16545426 ggaggactaaaaatatccattttttgtataaagttttcaaaatagggaccattttta-aaactacaatattttggaggagtaaatttatcatta------ 16545518  T
Q  595 aaattttatttgaactaaacttaaaaactcataattatacagggattaaaaacatatttaactctttt 662  Q
    |||||||||  | | |||||||||||||||| |||| |  ||||||||||||||||||||||| ||||    
T  16545519 aaattttatagggattaaacttaaaaactcaaaattttgtagggattaaaaacatatttaactttttt 16545586  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 46384620 - 46384580
Alignment:
Q  225 tctctttaaagccatatgcttttactcttttgtttttgttt 265  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  46384620 tctctttaaacccatatgcttttactcttttgtttttgttt 46384580  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 495 - 569
Target Start/End: Original strand, 37470922 - 37470996
Alignment:
Q  495 ggaggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatatttttt 569  Q
    ||||||||||| | |||||||||||||||||||||||  ||| ||  ||||||||||||||| || || ||||||    
T  37470922 ggaggactaaaagcatccattttttgtaaaaagtttttcaaataggaactattcttacaaaccatgatttttttt 37470996  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 514 - 582
Target Start/End: Complemental strand, 13392944 - 13392875
Alignment:
Q  514 ttttttgtaaaaa-gttttcaaaacagagactattcttacaaactataatattttttaggactaaaatta 582  Q
    ||||||||||||| ||||| |||| || ||||||| |||||||||| ||||||||  | |||||||||||    
T  13392944 ttttttgtaaaaaagtttttaaaatagggactatttttacaaactacaatattttggatgactaaaatta 13392875  T

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Target: scaffold0036 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 499 - 593
Target Start/End: Original strand, 48444 - 48540
Alignment:
Q  499 gactaaaggtatccatttt--ttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaatt 593  Q
    ||||||| |||||||||||  ||||||||||||||||||| || |||| |||||| |||||| ||| || |  |||||||||||||| |||| ||||    
T  48444 gactaaaagtatccattttttttgtaaaaagttttcaaaagagggactgttcttataaactacaattttatggaggactaaaattaccattaaaatt 48540  T

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Target: scaffold0020 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 499 - 655
Target Start/End: Original strand, 152190 - 152340
Alignment:
Q  499 gactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaattaaaat 598  Q
    |||||||  ||| ||||||||| || ||||||| |||| || |||||||||||||| ||| |||||| |  ||||||||      |||||| ||||||||    
T  152190 gactaaaaatattcattttttgcaagaagttttaaaaatagggactattcttacaatctacaatattatgaaggactaa------aattaccattaaaat 152283  T
Q  599 tttatttgaactaaacttaaaaactcataattatacagggattaaaaacatatttaa 655  Q
    |||||    ||||||||| |||| |||||||| || ||||| || ||||||||||||    
T  152284 tttataaagactaaacttgaaaattcataattttatagggactacaaacatatttaa 152340  T

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Target: scaffold0720 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 656
Target Start/End: Original strand, 5500 - 5636
Alignment:
Q  514 ttttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaaaattacaattacaattaaaattttatttgaactaaa 613  Q
    ||||||||| ||||||||||||| || ||||| | |||||||||| ||||||||  |||||||||  ||    ||| |||||||||| ||  | || ||     
T  5500 ttttttgtataaagttttcaaaatagggactacttttacaaactaaaatattttggaggactaaa--ta----taccattaaaatttcatagggaccaag 5593  T
Q  614 cttaaaaactcataattatacagggattaaaaacatatttaac 656  Q
    ||||||||||||| ||| |  ||||| ||||||||||||||||    
T  5594 cttaaaaactcatgattttgtagggactaaaaacatatttaac 5636  T

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Target: scaffold0478 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0478
Description:

Target: scaffold0478; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 584 - 656
Target Start/End: Complemental strand, 8669 - 8597
Alignment:
Q  584 aattacaattaaaattttatttgaactaaacttaaaaactcataattatacagggattaaaaacatatttaac 656  Q
    |||||| |||||||||| ||| | ||||| ||||||||||||| ||| |  ||||| ||||||||||||||||    
T  8669 aattaccattaaaatttcattgggactaagcttaaaaactcatgattttttagggactaaaaacatatttaac 8597  T

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