View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9429_4 (Length: 625)
Name: NF9429_4
Description: NF9429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9429_4 |
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Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 30 - 623
Target Start/End: Complemental strand, 21798003 - 21797398
Alignment:
| Q |
30 |
agacatacccatatggctatattttttatgacagtccaattaatctcaatagttggatgaacttatgtcataagacaatagttccacaaacttataatct |
129 |
Q |
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| T |
21798003 |
agacatacccatatggctatatttcttatgacagtacaattaatctcaatagttggatgaacttatgtcacaagacaatagttccacaaacttataatct |
21797904 |
T |
|
| Q |
130 |
agaccattcaacaaagattcaacggcttagactgaaaattgtgtgtaaatgtgacattttttaaccgcagctgatcctagtccacttactttcgac---- |
225 |
Q |
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| T |
21797903 |
agaccatccaataaagatccaacggcctaaatagaaaattgtgtgtaaacgtgccatttttcaaccgcagctgatcctagtccacc-actttcaacaaga |
21797805 |
T |
|
| Q |
226 |
---------ggaaatgaaaacaacacgacgtcgtttttcatttcaacataaattcaaaccccatt-acccgcgttctctcttcttcattcactttcacat |
315 |
Q |
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| T |
21797804 |
gcaatcaacggatacgaaaacaacacgacgtcgtttt-catttcaacataaattcaaaccccatttacccgcgttctctcttca-----ca-tttcacct |
21797712 |
T |
|
| Q |
316 |
tcatttcagatttttccaattcaaaaccctacttctccacaaatgtcatcacccataacctacccggtcgtcgtcgaagacaaagacctcgacgacgccg |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
21797711 |
tcatttcagatttttccaattcaaaaccctacttctccataaatgtcatcacccataacctacccggtcgtcgttgaagacaaagacctcgacgacgccg |
21797612 |
T |
|
| Q |
416 |
cattatgggcgatgatcgattccgcctccgcctccg------tctcacattcctcctcaaatcaaaaacctctcgcaatcaaataccatcaatcaccttc |
509 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
21797611 |
cattatgggcgatgatcgattccgcctccgcctccgcctccgtctcacattcctcctcaaagcaaaaacctctcgcaaacaaataccatcaatcaccttc |
21797512 |
T |
|
| Q |
510 |
tccgatctcaaaaccttcaccaccgtcaaagttcccgcgctactccaccgacagcggcgaagttgttcaagatccatggccttaccgtcctccgcgaaag |
609 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||| |
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| T |
21797511 |
tccgatctcaaaaccttcaccaccgtcaaagttcccgcgttactccaccgacagcggcgaagttgttcaagatccctggccttaccgaccaccgcgaaag |
21797412 |
T |
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| Q |
610 |
atcgcgagaatctc |
623 |
Q |
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|||||||||||||| |
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| T |
21797411 |
atcgcgagaatctc |
21797398 |
T |
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