View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9429_low_1 (Length: 660)
Name: NF9429_low_1
Description: NF9429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9429_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 20 - 613
Target Start/End: Original strand, 21797398 - 21798003
Alignment:
| Q |
20 |
gagattctcgcgatctttcgcggaggacggtaaggccatggatcttgaacaacttcgccgctgtcggtggagtagcgcgggaactttgacggtggtgaag |
119 |
Q |
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| T |
21797398 |
gagattctcgcgatctttcgcggtggtcggtaaggccagggatcttgaacaacttcgccgctgtcggtggagtaacgcgggaactttgacggtggtgaag |
21797497 |
T |
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| Q |
120 |
gttttgagatcggagaaggtgattgatggtatttgattgcgagaggtttttgatttgaggaggaatgtgaga------cggaggcggaggcggaatcgat |
213 |
Q |
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| T |
21797498 |
gttttgagatcggagaaggtgattgatggtatttgtttgcgagaggtttttgctttgaggaggaatgtgagacggaggcggaggcggaggcggaatcgat |
21797597 |
T |
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| Q |
214 |
catcgcccataatgcggcgtcgtcgaggtctttgtcttcgacgacgaccgggtaggttatgggtgatgacatttgtggagaagtagggttttgaattgga |
313 |
Q |
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| T |
21797598 |
catcgcccataatgcggcgtcgtcgaggtctttgtcttcaacgacgaccgggtaggttatgggtgatgacatttatggagaagtagggttttgaattgga |
21797697 |
T |
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| Q |
314 |
aaaatctgaaatgaatgtgaaagtgaatgaagaagagagaacgcgggt-aatggggtttgaatttatgttgaaatgaaaaacgacgtcgtgttgttttca |
412 |
Q |
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| T |
21797698 |
aaaatctgaaatgaaggtgaaa-tg-----tgaagagagaacgcgggtaaatggggtttgaatttatgttgaaatg-aaaacgacgtcgtgttgttttcg |
21797790 |
T |
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| Q |
413 |
tttcc-------------gtcgaaagtaagtggactaggatcagctgcggttaaaaaatgtcacatttacacacaattttcagtctaagccgttgaatct |
499 |
Q |
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| T |
21797791 |
tatccgttgattgctcttgttgaaagt-ggtggactaggatcagctgcggttgaaaaatggcacgtttacacacaattttctatttaggccgttggatct |
21797889 |
T |
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| Q |
500 |
ttgttgaatggtctagattataagtttgtggaactattgtcttatgacataagttcatccaactattgagattaattggactgtcataaaaaatatagcc |
599 |
Q |
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| T |
21797890 |
ttattggatggtctagattataagtttgtggaactattgtcttgtgacataagttcatccaactattgagattaattgtactgtcataagaaatatagcc |
21797989 |
T |
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| Q |
600 |
atatgggtatgtct |
613 |
Q |
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| T |
21797990 |
atatgggtatgtct |
21798003 |
T |
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