View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9429_low_2 (Length: 479)
Name: NF9429_low_2
Description: NF9429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9429_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 437; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 19 - 467
Target Start/End: Original strand, 42475321 - 42475769
Alignment:
| Q |
19 |
attacaactggattttacttgcaaaatctgtttgtaagtgaatcattttgatagaatgcccctgggagctttgataaaaacccaaatacctccattcctg |
118 |
Q |
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| T |
42475321 |
attacaactggattttacttgcaaaacctgtttgtaagtgaatcattttgatagaatgcccctgggagctttgataaaaacccaaatacctccattcctg |
42475420 |
T |
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| Q |
119 |
atagctcaaaaagctagttgggacatgttgcctatttttataatgcattaaaagctcagtgctgaaccgatatatgattgctaaatgattatttagctgt |
218 |
Q |
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| T |
42475421 |
atagctcgaaaagctagttgggacatgttgcctatttttataatgcattaaaagctcagtgctgaaccgatatatgattgctaaatgattatttagctgt |
42475520 |
T |
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| Q |
219 |
ttgttaaacatgttgcctgtttgatcatttgtttgataaatatgttgatgatcatttattcatttatatcttattttcaaatgaggattggggaaattga |
318 |
Q |
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| T |
42475521 |
ttgttaaacatgttgcctgtttgatcatttgtttgataaatatgttgatgatcatttattcatttatatcttattttcaaatgaggattggggaaattga |
42475620 |
T |
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| Q |
319 |
tcttggttttgtcaaattgaaatagacatttgagcattgtaaaattttctctgctttgtcatatatggaggaagatcattgttgaacaagatatctatgt |
418 |
Q |
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| T |
42475621 |
tcttggttttgtcaaattgaaatagacatttgagcattgtaaaattttctctgctttgtcgtatatggaggaagatcattgttgaacaagatatctatgt |
42475720 |
T |
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| Q |
419 |
ttgaatgcagcattttgattcagcaagtggatatttcatctcacaggtt |
467 |
Q |
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| T |
42475721 |
ttgaatgcagcattttgattcagcaagtggatatttcatctcacaggtt |
42475769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 380 - 467
Target Start/End: Original strand, 42468267 - 42468353
Alignment:
| Q |
380 |
tatatggaggaagatcattgttgaacaagatatctatgtttgaatgcagcattttgattcagcaagtggatatttcatctcacaggtt |
467 |
Q |
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| T |
42468267 |
tatatggagaaagatcattgtctaacaagatatctatatttgaatgcagcattttgattc-gtaagtggatatttcatctcacaggtt |
42468353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 189 - 327
Target Start/End: Original strand, 42480885 - 42481016
Alignment:
| Q |
189 |
tatatgattgctaaatgattatttagctgtttgttaaacatgttgcctgtttgatc-atttgtttgataaatatgttgatgatcatttattcatttatat |
287 |
Q |
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| T |
42480885 |
tatatgattgctaaatcgttatttagctgtttgttaaacatgttgcctgtttgatcaaatggttggatcaatctgttga-------ttatt-atttatat |
42480976 |
T |
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| Q |
288 |
cttattttcaaatgaggattggggaaattgatcttggttt |
327 |
Q |
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| T |
42480977 |
cttattttcaaatgagggcttgggaaattgatctttgttt |
42481016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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