View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9429_low_6 (Length: 237)
Name: NF9429_low_6
Description: NF9429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9429_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 153 - 231
Target Start/End: Original strand, 16209289 - 16209367
Alignment:
| Q |
153 |
agtagcttagttagtggtggaggaacaggacaaacaactacaagacattggtcagaggaaacactcaaacatgatgatg |
231 |
Q |
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| T |
16209289 |
agtagcttagttagtggtggaggaacaggacaaacaactacaagacattggtcagaggaaacactcaaacatgatgatg |
16209367 |
T |
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Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 16209132 - 16209219
Alignment:
| Q |
1 |
tcctatatagtcctatatgacataaaaata--atataacaagagaaaaagtgttgcatatggatactaatactagtaatagtagtagt |
86 |
Q |
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| T |
16209132 |
tcctatatagtcctatatgacatataaatataatataacaagagaaaaagcattgcatatggatactaatagcaatactagtagtagt |
16209219 |
T |
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