View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9430_low_5 (Length: 308)
Name: NF9430_low_5
Description: NF9430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9430_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 32163661 - 32163372
Alignment:
| Q |
1 |
tacgtgggaaggctattacagttatggaagggtgtgttttggtctagtccaattcttaacattgcagtcaaagtagtagcaaacttgcactcatagcaga |
100 |
Q |
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| T |
32163661 |
tacgtgggaaggctattacagttatggaagggtgtgttttggtctaatccaattcttaacattgcagtcaaagtagtagcaaacttgcactcatagcaga |
32163562 |
T |
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| Q |
101 |
tgtgttttttaaactcttgtgtaacattgnnnnnnntatacccaacttccaaaatccatgttggggtgataaataaatattctaaaattggattttcatt |
200 |
Q |
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| T |
32163561 |
tgtgttttttaaactcttgtgtaacattgaaaaaaatatacccaacttccaaaatccatgttggggtgataaataaatattctaaaattggattttcatt |
32163462 |
T |
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| Q |
201 |
tttgatacttgaatcctcattcaagttaatgacttgaataaatcaatactttgtgctgtactttgttcatgatatgaatagtgtgtatgg |
290 |
Q |
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| T |
32163461 |
tttgatacttgaatcctcattcaagttaatgacttgaataaataaatactttgtgctgtactttgttcatgatatgaatagtgtgtatgg |
32163372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 32156341 - 32156264
Alignment:
| Q |
3 |
cgtgggaaggctattacagttatggaagggtgtgttttggtctagtccaattcttaacattgcagtcaaagtagtagc |
80 |
Q |
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| T |
32156341 |
cgtgggaaggctgttacagtgatggaagggtgtgttttggtctagtcctatttctaacatttcagtcaaagtagtagc |
32156264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 32166707 - 32166638
Alignment:
| Q |
3 |
cgtgggaaggctattacagttatggaagggtgtgttttggtctagtccaattcttaacattgcagtcaaa |
72 |
Q |
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| T |
32166707 |
cgtgggaaggctgttacagtgatggaaggatctgttttggtctagtcctagtcctaacattgcagtcaaa |
32166638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 27333995 - 27334041
Alignment:
| Q |
3 |
cgtgggaaggctattacagttatggaagggtgtgttttggtctagtc |
49 |
Q |
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| T |
27333995 |
cgtggaaaggctattactgttatggaagggtgtgttctggtctagtc |
27334041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 27362767 - 27362811
Alignment:
| Q |
3 |
cgtgggaaggctattacagttatggaagggtgtgttttggtctag |
47 |
Q |
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| T |
27362767 |
cgtgggaaggctattatagtgatggaagggtgtgttctggtctag |
27362811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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