View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9430_low_8 (Length: 237)

Name: NF9430_low_8
Description: NF9430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9430_low_8
NF9430_low_8
[»] chr6 (6 HSPs)
chr6 (5-195)||(10079131-10079321)
chr6 (5-155)||(10077463-10077614)
chr6 (69-137)||(10083395-10083463)
chr6 (30-138)||(18344909-18345017)
chr6 (147-201)||(10095926-10095980)
chr6 (14-86)||(10095810-10095882)
[»] chr8 (4 HSPs)
chr8 (30-138)||(7823164-7823272)
chr8 (30-138)||(25217343-25217451)
chr8 (30-138)||(30326799-30326907)
chr8 (30-138)||(33861090-33861198)
[»] chr7 (3 HSPs)
chr7 (30-138)||(12784780-12784888)
chr7 (30-138)||(7038053-7038161)
chr7 (30-138)||(12779926-12780034)
[»] chr5 (4 HSPs)
chr5 (30-138)||(8427363-8427471)
chr5 (30-138)||(14190768-14190876)
chr5 (30-138)||(27882417-27882525)
chr5 (30-138)||(37374267-37374375)
[»] chr4 (3 HSPs)
chr4 (30-138)||(617548-617656)
chr4 (30-138)||(13345269-13345377)
chr4 (30-138)||(35857240-35857348)
[»] scaffold0356 (1 HSPs)
scaffold0356 (30-138)||(15004-15112)
[»] chr2 (5 HSPs)
chr2 (30-138)||(27194624-27194732)
chr2 (30-138)||(35611798-35611906)
chr2 (30-138)||(39441037-39441145)
chr2 (30-138)||(41918975-41919083)
chr2 (30-138)||(27844438-27844546)
[»] chr1 (2 HSPs)
chr1 (30-138)||(48234163-48234271)
chr1 (73-138)||(6309772-6309837)
[»] chr3 (2 HSPs)
chr3 (31-138)||(52919361-52919468)
chr3 (30-138)||(41763072-41763180)


Alignment Details
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 5 - 195
Target Start/End: Original strand, 10079131 - 10079321
Alignment:
Q  5 aatatattgactaattgtaatgaagaaatagatatagaaactgcttcaggatgatgtcgtgaattgaaactaatcaagataatgtaaaaagttaatcaat 104  Q
    |||||||||||||| |||||||||||||||||||||| ||||||| ||| ||||| || ||||| ||||||||| |||||||||| ||||||||||||||    
T  10079131 aatatattgactaaatgtaatgaagaaatagatataggaactgctacagaatgatttcatgaatggaaactaataaagataatgtgaaaagttaatcaat 10079230  T
Q  105 taataaatagaagatgtgaacaaattaatcaagagttcaagataatgtgctaagtttaaaatcaaaattacagcaaaaaggaaattaaaag 195  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||  ||||||||||||||||||||||||||||    
T  10079231 taataaatagaagatgtgaacaaattaatcaagatatcaagataatgtgcaaagtttaaaaagaaaattacagcaaaaaggaaattaaaag 10079321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 155
Target Start/End: Original strand, 10077463 - 10077614
Alignment:
Q  5 aatatattgactaattgtaatgaagaaatagatatagaaactgctt-caggatgatgtcgtgaattgaaactaatcaagataatgtaaaaagttaatcaa 103  Q
    ||||||||||| || ||||| |||||||||||||||| |||  | | ||  |||||||| ||||  |||||||||||| ||||||| ||||||||||| |    
T  10077463 aatatattgaccaaatgtaacgaagaaatagatataggaacgacgtacataatgatgtcatgaacggaaactaatcaaaataatgtgaaaagttaatcga 10077562  T
Q  104 ttaataaatagaagatgtgaacaaattaatcaagagttcaagataatgtgct 155  Q
    |||||||| |||||||| ||||||||||||| |||  |||| ||||||||||    
T  10077563 ttaataaacagaagatgcgaacaaattaatcgagatatcaaaataatgtgct 10077614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 10083395 - 10083463
Alignment:
Q  69 tgaaactaatcaagataatgtaaaaagttaatcaattaataaatagaagatgtgaacaaattaatcaag 137  Q
    ||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||    
T  10083395 tgaaactaatcaagataatgtgaaaagttaatcaattaataaacacaagatgtgaacaaattaatcaag 10083463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 18344909 - 18345017
Alignment:
Q  30 aaatagatatagaaactgcttcaggatgatgtcgtgaattgaaactaatcaagataatgtaaaaagttaatcaattaataaatagaagatgtgaacaaat 129  Q
    ||||||||||| |||||||| ||  |||||||| |||||    ||||||| |||||| || |||| ||||||||||||  || |||| ||||||||||||    
T  18344909 aaatagatataaaaactgctacataatgatgtcatgaatgctcactaatctagataacgtgaaaaattaatcaattaaagaacagaaaatgtgaacaaat 18345008  T
Q  130 taatcaaga 138  Q
    |||||||||    
T  18345009 taatcaaga 18345017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 10095926 - 10095980
Alignment:
Q  147 taatgtgctaagtttaaaatcaaaattacagcaaaaaggaaattaaaagcaagtt 201  Q
    |||||||| || |||||||  |||||||||||||||||||||||||||| |||||    
T  10095926 taatgtgcaaattttaaaaagaaaattacagcaaaaaggaaattaaaagaaagtt 10095980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 10095810 - 10095882
Alignment:
Q  14 actaattgtaatgaagaaatagatatagaaactgcttcaggatgatgtcgtgaattgaaactaatcaagataa 86  Q
    ||||| |||||||||||||||||||||| ||| ||  ||  |||||||| ||||| ||||||||| |||||||    
T  10095810 actaaatgtaatgaagaaatagatataggaacagcaacataatgatgtcatgaatggaaactaattaagataa 10095882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 7823164 - 7823272
Alignment:
Q  30 aaatagatatagaaactgcttcaggatgatgtcgtgaattgaaactaatcaagataatgtaaaaagttaatcaattaataaatagaagatgtgaacaaat 129  Q
    |||||||||||| ||||||| ||  |||||||| |||||    ||||||| |||||| || ||||  ||||||||||| ||| |||| ||||||||||||    
T  7823164 aaatagatataggaactgctacaaaatgatgtcatgaatgctcactaatctagataacgtgaaaaagtaatcaattaaaaaacagaaaatgtgaacaaat 7823263  T
Q  130 taatcaaga 138  Q
    |||||||||    
T  7823264 taatcaaga 7823272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 138
Target Start/End: Complemental strand, 25217451 - 25217343
Alignment:
Q  30 aaatagatatagaaactgcttcaggatgatgtcgtgaattgaaactaatcaagataatgtaaaaagttaatcaattaataaatagaagatgtgaacaaat 129  Q
    |||||||||||| ||||||| ||  |||||||| |||||    ||||||| |||||| || ||||  ||||||||||| ||| |||| ||| ||||||||    
T  25217451 aaatagatataggaactgctacaaaatgatgtcatgaatgctcactaatctagataacgtgaaaaagtaatcaattaaaaaacagaaaatgggaacaaat 25217352  T
Q  130 taatcaaga 138  Q
    |||||||||    
T  25217351 taatcaaga 25217343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 30326799 - 30326907
Alignment:
Q  30 aaatagatatagaaactgcttcaggatgatgtcgtgaattgaaactaatcaagataatgtaaaaagttaatcaattaataaatagaagatgtgaacaaat 129  Q
    |||||||||||| ||||||| ||  |||||||| |||||    ||||||| |||||| || ||||  ||||||||||| ||| ||||  |||||||||||    
T  30326799 aaatagatataggaactgctacaaaatgatgtcatgaatgctcactaatctagataacgtgaaaaagtaatcaattaaaaaacagaaactgtgaacaaat 30326898  T
Q  130 taatcaaga 138  Q
    |||||||||    
T  30326899 taatcaaga 30326907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 138
Target Start/End: Complemental strand, 33861198 - 33861090
Alignment:
Q  30 aaatagatatagaaactgcttcaggatgatgtcgtgaattgaaactaatcaagataatgtaaaaagttaatcaattaataaatagaagatgtgaacaaat 129  Q
    |||||||||||| ||||||| ||  |||||||| |||||    ||||||  |||||| || | || ||||||||||||  || |||  ||||||||||||    
T  33861198 aaatagatataggaactgctacaaaatgatgtcatgaatgctcactaatatagataacgtgacaaattaatcaattaaagaacagataatgtgaacaaat 33861099  T
Q  130 taatcaaga 138  Q
    |||||||||    
T  33861098 taatcaaga 33861090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 138
Target Start/End: Complemental strand, 12784888 - 12784780
Alignment:
Q  30 aaatagatatagaaactgcttcaggatgatgtcgtgaattgaaactaatcaagataatgtaaaaagttaatcaattaataaatagaagatgtgaacaaat 129  Q
    |||||||||||| ||||||| ||  |||||||| |||||    ||||||| |||||| || ||||  ||||||||||| ||| |||| ||||||||||||    
T  12784888 aaatagatataggaactgctacaaaatgatgtcatgaatgctcactaatctagataacgtgaaaaagtaatcaattaaaaaacagaaaatgtgaacaaat 12784789  T
Q  130 taatcaaga 138  Q
    |||||||||    
T  12784788 taatcaaga 12784780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 7038053 - 7038161
Alignment:
Q  30 aaatagatatagaaactgcttcaggatgatgtcgtgaattgaaactaatcaagataatgtaaaaagttaatcaattaataaatagaagatgtgaacaaat 129  Q
    |||||||||||| |||||||  |  |||||||| |||||    ||||||| |||||| || ||||  ||||||||||| ||| |||| ||||||||||||    
T  7038053 aaatagatataggaactgctataaaatgatgtcatgaatgctcactaatctagataacgtgaaaaagtaatcaattaaaaaacagaaaatgtgaacaaat 7038152  T
Q  130 taatcaaga 138  Q
    |||||||||    
T  7038153 taatcaaga 7038161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 138
Target Start/End: Complemental strand, 12780034 - 12779926
Alignment:
Q  30 aaatagatatagaaactgcttcaggatgatgtcgtgaattgaaactaatcaagataatgtaaaaagttaatcaattaataaatagaagatgtgaacaaat 129  Q
    |||||||||||| ||||||| ||  |||||||| |||||    ||||||| |||||| || ||||  ||||||||||| ||| |||| ||| ||||||||    
T  12780034 aaatagatataggaactgctacaaaatgatgtcatgaatgctcactaatctagataacgtgaaaaagtaatcaattaaaaaacagaaaatgggaacaaat 12779935  T
Q  130 taatcaaga 138  Q
    |||||||||    
T  12779934 taatcaaga 12779926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 138
Target Start/End: Complemental strand, 8427471 - 8427363
Alignment:
Q  30 aaatagatatagaaactgcttcaggatgatgtcgtgaattgaaactaatcaagataatgtaaaaagttaatcaattaataaatagaagatgtgaacaaat 129  Q
    |||||||||||| ||||||| ||  |||||||| |||||    ||||||| |||||| || ||||  ||||||||||| |||||||| ||| ||||||||    
T  8427471 aaatagatataggaactgctacaaaatgatgtcatgaatgctcactaatctagataacgtgaaaaagtaatcaattaaaaaatagaaaatgggaacaaat 8427372  T
Q  130 taatcaaga 138  Q
    |||||||||    
T  8427371 taatcaaga 8427363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 138
Target Start/End: Complemental strand, 14190876 - 14190768
Alignment:
Q  30 aaatagatatagaaactgcttcaggatgatgtcgtgaattgaaactaatcaagataatgtaaaaagttaatcaattaataaatagaagatgtgaacaaat 129  Q
    |||||||||||||||||||| ||  |||||||| |||||    | ||||| |||||| || |||| ||||||||||||  || |||| ||||||||||||    
T  14190876 aaatagatatagaaactgctacaaaatgatgtcatgaatgctcattaatctagataacgtgaaaaattaatcaattaaagaacagaaaatgtgaacaaat 14190777  T
Q  130 taatcaaga 138  Q
    |||||||||    
T  14190776 taatcaaga 14190768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 27882417 - 27882525
Alignment:
Q  30 aaatagatatagaaactgcttcaggatgatgtcgtgaattgaaactaatcaagataatgtaaaaagttaatcaattaataaatagaagatgtgaacaaat 129  Q
    |||||||||||| ||||||| ||  |||||||| |||||    ||||||| |||||| || ||||| ||||||||||| ||| | || ||||||||||||    
T  27882417 aaatagatataggaactgctacaaaatgatgtcatgaatgctcactaatctagataacgtgaaaaggtaatcaattaaaaaacaaaaaatgtgaacaaat 27882516  T
Q  130 taatcaaga 138  Q
    |||||||||    
T  27882517 taatcaaga 27882525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 37374267 - 37374375
Alignment:
Q  30 aaatagatatagaaactgcttcaggatgatgtcgtgaattgaaactaatcaagataatgtaaaaagttaatcaattaataaatagaagatgtgaacaaat 129  Q
    |||||||||||| ||||||| ||  |||||||| |||||    ||||||| |||||| || ||||  ||||||||||| ||| |||| ||||||||||||    
T  37374267 aaatagatataggaactgctacaaaatgatgtcatgaatgctcactaatctagataacgtgaaaaagtaatcaattaaaaaacagaaaatgtgaacaaat 37374366  T
Q  130 taatcaaga 138  Q
    |||||||||    
T  37374367 taatcaaga 37374375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 138
Target Start/End: Complemental strand, 617656 - 617548
Alignment:
Q  30 aaatagatatagaaactgcttcaggatgatgtcgtgaattgaaactaatcaagataatgtaaaaagttaatcaattaataaatagaagatgtgaacaaat 129  Q
    ||||||||||| |||||||| ||  |||||||| |||||    ||||||| |||||| || |||| ||||||||||||  ||||||| |||||| |||||    
T  617656 aaatagatataaaaactgctacaaaatgatgtcatgaatgctcactaatctagataacgtgaaaaattaatcaattaaagaatagaaaatgtgatcaaat 617557  T
Q  130 taatcaaga 138  Q
    |||||||||    
T  617556 taatcaaga 617548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 13345269 - 13345377
Alignment:
Q  30 aaatagatatagaaactgcttcaggatgatgtcgtgaattgaaactaatcaagataatgtaaaaagttaatcaattaataaatagaagatgtgaacaaat 129  Q
    |||||||||||| ||||| | ||  |||||||| |||||    ||||||| |||||| || ||||  ||||||||||| ||| |||| ||||||||||||    
T  13345269 aaatagatataggaactgatacaaaatgatgtcatgaatgctcactaatctagataacgtgaaaaagtaatcaattaaaaaacagaaaatgtgaacaaat 13345368  T
Q  130 taatcaaga 138  Q
    |||||||||    
T  13345369 taatcaaga 13345377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 35857240 - 35857348
Alignment:
Q  30 aaatagatatagaaactgcttcaggatgatgtcgtgaattgaaactaatcaagataatgtaaaaagttaatcaattaataaatagaagatgtgaacaaat 129  Q
    |||||||||||| ||||||| ||  |||||||| |||||    ||||||| |||||| || ||||  ||||||||||| ||| |||| ||| ||||||||    
T  35857240 aaatagatataggaactgctacaaaatgatgtcatgaatgctcactaatctagataacgtgaaaaagtaatcaattaaaaaacagaaaatgggaacaaat 35857339  T
Q  130 taatcaaga 138  Q
    |||||||||    
T  35857340 taatcaaga 35857348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 138
Target Start/End: Complemental strand, 15112 - 15004
Alignment:
Q  30 aaatagatatagaaactgcttcaggatgatgtcgtgaattgaaactaatcaagataatgtaaaaagttaatcaattaataaatagaagatgtgaacaaat 129  Q
    |||||||||||| ||||||| ||  |||||||| |||||    ||||||| |||||| || |||| ||||||||||||  || |||  ||||||||||||    
T  15112 aaatagatataggaactgctacaaaatgatgtcatgaatgctcactaatctagataacgtgaaaaattaatcaattaaagaacagataatgtgaacaaat 15013  T
Q  130 taatcaaga 138  Q
    |||||||||    
T  15012 taatcaaga 15004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 27194624 - 27194732
Alignment:
Q  30 aaatagatatagaaactgcttcaggatgatgtcgtgaattgaaactaatcaagataatgtaaaaagttaatcaattaataaatagaagatgtgaacaaat 129  Q
    ||||||||||| |||||||| ||| |||||||| |||||    ||||||| |||||| || ||||   ||||||||||  || |||| ||||||||||||    
T  27194624 aaatagatataaaaactgctacagaatgatgtcatgaatgctcactaatctagataacgtgaaaaaagaatcaattaaagaacagaaaatgtgaacaaat 27194723  T
Q  130 taatcaaga 138  Q
    |||||||||    
T  27194724 taatcaaga 27194732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 35611798 - 35611906
Alignment:
Q  30 aaatagatatagaaactgcttcaggatgatgtcgtgaattgaaactaatcaagataatgtaaaaagttaatcaattaataaatagaagatgtgaacaaat 129  Q
    |||||||||||||||||||| ||  |||||||| |||||    | ||||| | |||| || |||| ||||||||||||  || |||| ||||||||||||    
T  35611798 aaatagatatagaaactgctacaaaatgatgtcatgaatgctcattaatctaaataacgtgaaaaattaatcaattaaagaacagaaaatgtgaacaaat 35611897  T
Q  130 taatcaaga 138  Q
    |||||||||    
T  35611898 taatcaaga 35611906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 138
Target Start/End: Complemental strand, 39441145 - 39441037
Alignment:
Q  30 aaatagatatagaaactgcttcaggatgatgtcgtgaattgaaactaatcaagataatgtaaaaagttaatcaattaataaatagaagatgtgaacaaat 129  Q
    |||||||||||||||||||| ||  |||||||| |||||    ||||||  |||||| || |||| |||||||| |||  || |||| ||||||||||||    
T  39441145 aaatagatatagaaactgctacaaaatgatgtcatgaatgctcactaatttagataacgtgaaaaattaatcaaataaagaacagaaaatgtgaacaaat 39441046  T
Q  130 taatcaaga 138  Q
    |||||||||    
T  39441045 taatcaaga 39441037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 138
Target Start/End: Complemental strand, 41919083 - 41918975
Alignment:
Q  30 aaatagatatagaaactgcttcaggatgatgtcgtgaattgaaactaatcaagataatgtaaaaagttaatcaattaataaatagaagatgtgaacaaat 129  Q
    |||||||||||| ||||||| ||  |||||||| |||||    ||||||| |||||| || ||||  ||||||||||| ||| |||| ||| ||||||||    
T  41919083 aaatagatataggaactgctacaaaatgatgtcatgaatgctcactaatctagataacgtgaaaaagtaatcaattaaaaaacagaaaatgggaacaaat 41918984  T
Q  130 taatcaaga 138  Q
    |||||||||    
T  41918983 taatcaaga 41918975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 27844438 - 27844546
Alignment:
Q  30 aaatagatatagaaactgcttcaggatgatgtcgtgaattgaaactaatcaagataatgtaaaaagttaatcaattaataaatagaagatgtgaacaaat 129  Q
    ||||||||||| |||||||| ||  |||||||| |||||    ||||||| |||||| || ||||   ||||||||||  || |||| ||||||||||||    
T  27844438 aaatagatataaaaactgctacaaaatgatgtcatgaatgctcactaatctagataacgtgaaaaaaaaatcaattaaagaacagaaaatgtgaacaaat 27844537  T
Q  130 taatcaaga 138  Q
    |||||||||    
T  27844538 taatcaaga 27844546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 48234163 - 48234271
Alignment:
Q  30 aaatagatatagaaactgcttcaggatgatgtcgtgaattgaaactaatcaagataatgtaaaaagttaatcaattaataaatagaagatgtgaacaaat 129  Q
    ||||||||||| |||||||| ||  |||||||| |||||    ||||||| |||||| || ||||  |||||||||||  || |||| ||||||||||||    
T  48234163 aaatagatataaaaactgctacaaaatgatgtcatgaatgctcactaatctagataacgtgaaaaaataatcaattaaagaacagaaaatgtgaacaaat 48234262  T
Q  130 taatcaaga 138  Q
    |||||||||    
T  48234263 taatcaaga 48234271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 138
Target Start/End: Complemental strand, 6309837 - 6309772
Alignment:
Q  73 actaatcaagataatgtaaaaagttaatcaattaataaatagaagatgtgaacaaattaatcaaga 138  Q
    ||||||| |||||| || ||||  ||||||||||| ||| |||| |||||||||||||||||||||    
T  6309837 actaatctagataacgtgaaaaagtaatcaattaaaaaacagaaaatgtgaacaaattaatcaaga 6309772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 52919361 - 52919468
Alignment:
Q  31 aatagatatagaaactgcttcaggatgatgtcgtgaattgaaactaatcaagataatgtaaaaagttaatcaattaataaatagaagatgtgaacaaatt 130  Q
    ||||||||||| ||||||| ||  ||| |||| |||||    ||||||| |||||| || ||||  ||||||||||| ||| |||| |||||||||||||    
T  52919361 aatagatataggaactgctacaaaatgttgtcatgaatgctcactaatctagataacgtgaaaaagtaatcaattaaaaaacagaaaatgtgaacaaatt 52919460  T
Q  131 aatcaaga 138  Q
    ||||||||    
T  52919461 aatcaaga 52919468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 138
Target Start/End: Complemental strand, 41763180 - 41763072
Alignment:
Q  30 aaatagatatagaaactgcttcaggatgatgtcgtgaattgaaactaatcaagataatgtaaaaagttaatcaattaataaatagaagatgtgaacaaat 129  Q
    |||||||||||| ||||||| ||  |||||||| |||||    ||||||  |||||| || | || ||||||||||||  || |||  ||||||||||||    
T  41763180 aaatagatataggaactgctacaaaatgatgtcatgaatgctcactaatatagataacgtgacaaattaatcaattaaagaacagataatgtgaacaaat 41763081  T
Q  130 taatcaaga 138  Q
    |||||||||    
T  41763080 taatcaaga 41763072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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