View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9431_low_1 (Length: 537)
Name: NF9431_low_1
Description: NF9431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9431_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 11 - 435
Target Start/End: Complemental strand, 7259952 - 7259529
Alignment:
| Q |
11 |
aagcaaaggtgaga--aactatggaagaattgtttgttgattatcttaattaaatttcctttcaaaacttaagacttcaagttatgtatgctatgacagt |
108 |
Q |
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| T |
7259952 |
aagcaaaggtgagagaaactatggaagaattgtttgttgattatcttaatgaaatttcctttcaaaacttaagacttcaagttatgtatgctatgacagt |
7259853 |
T |
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| Q |
109 |
tagaaagcattgtgaagttgtaccctggtgttagtcatggatggacattgaggtacaatgttgaagatgaagttgcagttaagaatgcagaagaggctca |
208 |
Q |
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| T |
7259852 |
tagaaagcattgtgaagttgtaccctggtgttagtcatggatggacattgagatacagtgttgaagatgaagttgcagttaagaatgcagaagaggctca |
7259753 |
T |
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| Q |
209 |
tcaggacatgttgaattggtttatcaagtatgtcaagtgaatgtcaaaaatgatacatgtaattgaaattaagtgagaaaaaatattattgttgtttact |
308 |
Q |
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| T |
7259752 |
tcaggacatgttgaattggtttatcaagtatgtcaagtgaatgtcaaaaatgatacatgtaattgaaattaagtgagtaaaaatattattgttgtttact |
7259653 |
T |
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| Q |
309 |
tgtggttaataagagaatacaatgcgaaaaagtgttacatttaggtgtactatttgtttatagtaataatttattagtaaacttgtcaacttggtgaatt |
408 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7259652 |
tgtggttaataagagaatacaatgtgaaaaagtgttacatttaggtgtactatttgtttatag---taatttattagtaaacttgtcaacttggtgaatt |
7259556 |
T |
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| Q |
409 |
gttgatgtttgtgaaattggctcagtg |
435 |
Q |
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| T |
7259555 |
gttgatgtttgtgaaattggctcagtg |
7259529 |
T |
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