View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9431_low_11 (Length: 277)
Name: NF9431_low_11
Description: NF9431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9431_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 35644334 - 35644109
Alignment:
| Q |
16 |
attttatttgtcataaaccctcaactaaggttccgacaaggcaaagagcagatctgatcatgatagccaagtggaagaagagtcgtatgagattaagacg |
115 |
Q |
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| T |
35644334 |
attttatttgtcataaacccacaactaaggtttcgacaaggcgaag--cagatttgatcatgatagccaaatggaagaagagtcgtataagattaagacg |
35644237 |
T |
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| Q |
116 |
acactttgaagggagtatgtatgcacatgaggtttggaaccatatacnnnnnnnnngaatcggaacaaaaacaatatactaaaatccgtaaaatataatc |
215 |
Q |
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|||||||||||||||||| |||||||||||||||||||| | |||| | |||||||| ||||||||||||||||||||||||||| |
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| T |
35644236 |
acactttgaagggagtata----cacatgaggtttggaaccattt----ttttttttaatcaggacaaaaaccatatactaaaatccgtaaaatataatc |
35644145 |
T |
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| Q |
216 |
caaagtttgacatagatagtggagtgcatgtgaata |
251 |
Q |
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|||||||||||||||||||||||| |||||||||| |
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| T |
35644144 |
taaagtttgacatagatagtggagtacatgtgaata |
35644109 |
T |
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