View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9431_low_12 (Length: 267)
Name: NF9431_low_12
Description: NF9431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9431_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 35291929 - 35292175
Alignment:
| Q |
1 |
caaagttgtttttaaatgaataaagttaactctttaaaattgagtttacttaaagcaacaaattattgtgaaacaaatatgagttcgaaattccaaattg |
100 |
Q |
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| T |
35291929 |
caaagttgtttttaactgaataaagttaaatctttaaaattgagtttacttaaagcaacaaattattgtaaaacaaatatgagttcgaaattttacattg |
35292028 |
T |
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| Q |
101 |
tttagaaatatagaggtttatcactttataaatgagaaaactcataaacacaatatcttaaaatttttgattaaaaatgtaatgttcaacttacttgttt |
200 |
Q |
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| T |
35292029 |
tttagaaatatagaggtttatcattttataaatgagaaaacttataaacacaatatcttaaagtttttggttaaagatgtgatgttcaacttacttgttt |
35292128 |
T |
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| Q |
201 |
gattgttctggattcaatattgatgatactcaagactcctctcgtga |
247 |
Q |
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| T |
35292129 |
gattgttctggattcaatattgatgatactcaagactcctctcgtga |
35292175 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 198
Target Start/End: Original strand, 41857449 - 41857549
Alignment:
| Q |
97 |
attgtttagaaatatagaggtttatcactttataaatgagaaaactcataaacacaatatcttaaaatttttgattaaaaatgtaatgttcaacttactt |
196 |
Q |
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|||||| ||||||||||||||||| || ||||||||||| || || ||||||| |||| |||||| |||| | || || |||| |||||||||| |||| |
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| T |
41857449 |
attgttaagaaatatagaggtttaacattttataaatgataacacccataaactcaatgacttaaagttttgggtt-aagatgtgatgttcaactcactt |
41857547 |
T |
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| Q |
197 |
gt |
198 |
Q |
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|| |
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| T |
41857548 |
gt |
41857549 |
T |
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