View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9431_low_15 (Length: 255)

Name: NF9431_low_15
Description: NF9431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9431_low_15
NF9431_low_15
[»] chr6 (4 HSPs)
chr6 (1-255)||(897306-897560)
chr6 (1-255)||(1236898-1237147)
chr6 (1-229)||(1182632-1182849)
chr6 (10-237)||(1193563-1193781)
[»] chr7 (1 HSPs)
chr7 (5-255)||(20256953-20257183)
[»] scaffold0302 (1 HSPs)
scaffold0302 (5-255)||(19803-20033)
[»] chr4 (1 HSPs)
chr4 (159-255)||(12857266-12857361)


Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 897560 - 897306
Alignment:
Q  1 tacgtgcagctcccggctttcctttcgatgatccatccacattccatttccaaacattttggggagggggacaccgtactactgacaatctactgccaaa 100  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  897560 tacgtgcagctcccggcttccctttcgatgatctatccacattccatttccaaacattttggggagggggacaccgtactactgacaatctactgccaaa 897461  T
Q  101 caatctctttccatgttttaatcacttgaattttatacaaatggaccacgtgatacacacacatgttctacgaagggtttgagacttgagaaaccaaacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  897460 caatctctttccatgttttaatcacttgaattttatacaaatggaccacgtgatacacacacatgttctacgaagggtttgagacttgagaaaccaaacc 897361  T
Q  201 acccaatccccaacaccacatcacattggtaacaagctgccatgacaacttctga 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  897360 acccaatccccaacaccacatcacattggtaacaagctgccatgacaacttctga 897306  T

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Target: chr6; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 1236898 - 1237147
Alignment:
Q  1 tacgtgcagctcccggctttcctttcgatgatccatccacattccatttccaaacattttggggagggggacaccgtactactgacaatctactgccaaa 100  Q
    |||| |||||||||||||| ||||| || |||||| ||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||| || ||    
T  1236898 tacgcgcagctcccggcttcccttttgacgatccaaccacattccattttcaaacattttgtggagggggacaccgtactgctgacaatctactacc-aa 1236996  T
Q  101 caatctctttccatgttttaatcacttgaattttatacaaatggaccacgtgat--acacacacatgttctacgaagggtttgagacttgagaaaccaaa 198  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||  |||||||||  ||||| |||||||| || |||||||     | |    
T  1236997 caatctctttccatgttttaatctcttgaattttatacaaatggaccgcgtgatacacacacacacattctatgaagggttggacacttgag-----aga 1237091  T
Q  199 ccacccaatccccaacaccacatcacattggtaacaagctgccatgacaacttctga 255  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1237092 ccacccaatccccaacaccacatcacattggtaacaagc-gccatgacaacttctga 1237147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 1182849 - 1182632
Alignment:
Q  1 tacgtgcagctcccggctttcctttcgatgatccatccacattccatttccaaacattttggggagggggacaccgtactactgacaatctactgccaaa 100  Q
    |||| |||||||||||||| |||||||| |||| |||||||||||||||| |||||||||| ||||||||||||| ||||              |||||     
T  1182849 tacgcgcagctcccggcttccctttcgacgatctatccacattccatttcaaaacattttgtggagggggacaccatact--------------gccaa- 1182765  T
Q  101 caatctctttccatgttttaatcacttgaattttatacaaat-----ggaccacgtgatacacacacatgttctacgaagggtttgagacttgagaaacc 195  Q
    |||| | |||||||||||||||| ||||||||||||||||||     ||||| |||||||||||||||| ||||| |||||||||||||||||||| |||    
T  1182764 caatatttttccatgttttaatctcttgaattttatacaaatatattggaccgcgtgatacacacacatattctatgaagggtttgagacttgagagacc 1182665  T
Q  196 aaaccacccaatccccaacaccacatcacattgg 229  Q
     | | ||| |||  ||||||||||||||||||||    
T  1182664 -acctacctaatttccaacaccacatcacattgg 1182632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 1193781 - 1193563
Alignment:
Q  10 ctcccggctttcctttcgatgatccatccacattccatttccaaacattttggggagggggacaccgtactactgacaatctactgccaaacaatctctt 109  Q
    ||||| |||| ||||| || ||||||||||||||||||||| |||||||||| ||||||||||||| ||||              ||||| |||||| ||    
T  1193781 ctcccagcttcccttttgacgatccatccacattccatttcaaaacattttgtggagggggacaccatact--------------gccaa-caatctttt 1193697  T
Q  110 tccatgttttaatcacttgaattttatacaaa---tggaccacgtgatacacacacat----gttctacgaagggtttgagacttgagaaaccaaaccac 202  Q
    |||||||||||||| |||||||||||||||||   |||||| ||||||||||||||||     ||| | |||||||||||||||  ||| ||| | | ||    
T  1193696 tccatgttttaatctcttgaattttatacaaatattggaccgcgtgatacacacacatattcattcaatgaagggtttgagactctagagacc-acctac 1193598  T
Q  203 ccaatccccaacaccacatcacattggtaacaagc 237  Q
    | ||||||||||||||||||||||||| |||||||    
T  1193597 ctaatccccaacaccacatcacattggaaacaagc 1193563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 5 - 255
Target Start/End: Original strand, 20256953 - 20257183
Alignment:
Q  5 tgcagctcccggctttcctttcgatgatccatccacattccatttccaaacattttggggagggggacaccgtactactgacaatctactgccaaacaat 104  Q
    ||||||||||||||| |||||| | ||||||||||||||||||| |||||||||||| ||||||||||||| || | |||||||||||                
T  20256953 tgcagctcccggcttccctttcaacgatccatccacattccattaccaaacattttgtggagggggacaccatattgctgacaatcta------------ 20257040  T
Q  105 ctctttccatgttttaatcacttgaattttatacaaatggaccacgtgatacacacacatgttctacgaagggtttgagacttgagaaaccaaaccaccc 204  Q
       |||||||||||||||| ||||||||||||||||||||||||||||||    |||||| ||||| ||| |||||||||||||||| ||| | | |||     
T  20257041 ---tttccatgttttaatctcttgaattttatacaaatggaccacgtgat----acacatattctatgaaaggtttgagacttgagagacc-acctacct 20257132  T
Q  205 aatccccaacaccacatcacattggtaacaagctgccatgacaacttctga 255  Q
    |||||||||||| |||||||||||||| || ||||||||||||||||||||    
T  20257133 aatccccaacacgacatcacattggtatcaggctgccatgacaacttctga 20257183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 5 - 255
Target Start/End: Complemental strand, 20033 - 19803
Alignment:
Q  5 tgcagctcccggctttcctttcgatgatccatccacattccatttccaaacattttggggagggggacaccgtactactgacaatctactgccaaacaat 104  Q
    |||||||||| |||| |||||| | ||||||||||||||||||| |||||||||||| ||||||||||| |||| | ||||||||||                 
T  20033 tgcagctcccagcttccctttcaacgatccatccacattccattaccaaacattttgtggagggggacaacgtattgctgacaatct------------- 19947  T
Q  105 ctctttccatgttttaatcacttgaattttatacaaatggaccacgtgatacacacacatgttctacgaagggtttgagacttgagaaaccaaaccaccc 204  Q
      ||||||||||||||||| ||||| |||||||||||||||||||||||||    ||||| ||||| |||||||||||||||||||| ||| | | |||     
T  19946 --ctttccatgttttaatctcttgagttttatacaaatggaccacgtgata----cacatattctatgaagggtttgagacttgagagacc-acctacct 19854  T
Q  205 aatccccaacaccacatcacattggtaacaagctgccatgacaacttctga 255  Q
    |||||||| |||||||||||||||| | ||||||||||||||||| |||||    
T  19853 aatccccagcaccacatcacattggcatcaagctgccatgacaacctctga 19803  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 255
Target Start/End: Complemental strand, 12857361 - 12857266
Alignment:
Q  159 acacatgttctacgaagggtttgagacttgagaaaccaaaccacccaatccccaacaccacatcacattggtaacaagctgccatgacaacttctga 255  Q
    |||||| ||||| |||||||||||||||||||| ||||  | ||| |||||||| ||| |||||||||| | | ||||||||||||||||| |||||    
T  12857361 acacatattctatgaagggtttgagacttgagagaccac-ctacctaatccccagcactacatcacatttgcatcaagctgccatgacaacctctga 12857266  T

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