View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9431_low_18 (Length: 245)
Name: NF9431_low_18
Description: NF9431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9431_low_18 |
 | |
|
| [»] scaffold0591 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0591 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: scaffold0591
Description:
Target: scaffold0591; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 6542 - 6328
Alignment:
| Q |
1 |
gccatgaaccatgttgaatgggacacccccttctcgaattgcattattaagctcagacctaagaatggaaaaatagaaacgagaaattatgtattcaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6542 |
gccatgaaccatgttgaatgggacacccccttctcgaattgcattattaaactcagacctaagaatggaaaaatagaaacgagaaattatgtattcaaat |
6443 |
T |
|
| Q |
101 |
actttcctaataaatgaagaaactggctgttgagattgaaaaagtctca--attgtaaggcttatctagcnnnnnnnttcatgttgcaatattggagcaa |
198 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6442 |
actttcctaataaatgaagaaactggctcttgagattgaaaaagtctcaatattggaaggcttatctagcaaaaaaattcatgttgcaatattggagcaa |
6343 |
T |
|
| Q |
199 |
ctattttataaacaa |
213 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
6342 |
ctattttataaacaa |
6328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 163; Significance: 4e-87; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 28643241 - 28643449
Alignment:
| Q |
1 |
gccatgaaccatgttgaatgggacacccccttctcgaattgcattattaagctcagacctaagaatggaaaaatagaaacgagaaattatgtattcaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28643241 |
gccatgaaccatgttgaatgggacacccccttctcgaattgcattattaagctcagacctatgaa----aaaatagaaacgagaaattatgtattcaatt |
28643336 |
T |
|
| Q |
101 |
actttcctaataaatgaagaaactggctgttgagattgaaaaagtctcaattgtaaggcttatctagcnnnnnnnttcatgttgcaatattggagcaact |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28643337 |
actttcctaataaatgaagaaactggctgttgagattgaaaaagtctcaattggaaggcttatctagcaaaaaaaatcatgttgcaatattggagcaact |
28643436 |
T |
|
| Q |
201 |
attttataaacaa |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
28643437 |
attttataaacaa |
28643449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 28652193 - 28652401
Alignment:
| Q |
1 |
gccatgaaccatgttgaatgggacacccccttctcgaattgcattattaagctcagacctaagaatggaaaaatagaaacgagaaattatgtattcaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28652193 |
gccatgaaccatgttgaatgggacacccccttctcgaattgcattattaagctcagacctatgaa----aaaatagaaacgagaaattatgtattcaatt |
28652288 |
T |
|
| Q |
101 |
actttcctaataaatgaagaaactggctgttgagattgaaaaagtctcaattgtaaggcttatctagcnnnnnnnttcatgttgcaatattggagcaact |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28652289 |
actttcctaataaatgaagaaactggctgttgagattgaaaaagtctcaattggaaggcttatctagcaaaaaaaatcatgttgcaatattggagcaact |
28652388 |
T |
|
| Q |
201 |
attttataaacaa |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
28652389 |
attttataaacaa |
28652401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 28699512 - 28699715
Alignment:
| Q |
1 |
gccatgaaccatgttgaatgggacacccccttctcgaattgcattattaagctcagacctaagaatggaaaaatagaaacgagaaattatgtattcaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| | ||||| ||||||||||| |||| |
|
|
| T |
28699512 |
gccatgaaccatgttgaatgggacacccccttctcgaattgcattcttaaggtcagacctaagaatgaa------gaaac----aattatgtatttaatt |
28699601 |
T |
|
| Q |
101 |
actttcctaataaatgaagaaactggctgttgagattgaaaaagtctcaattgtaaggcttatctagc-nnnnnnnttcatgttgcaatattggagcaac |
199 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
28699602 |
actatcctaataaatgaagaaactggctgttgagattgaaaaggtctctattggaaggcttatctagcaaacaaaattcatgttgcaatgttggagcaac |
28699701 |
T |
|
| Q |
200 |
tattttataaacaa |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
28699702 |
aattttataaacaa |
28699715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 28725321 - 28725406
Alignment:
| Q |
1 |
gccatgaaccatgttgaatgggacacccccttctcgaattgcattattaagctcagacctaagaatggaaaaatagaaacgagaaa |
86 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||| |
|
|
| T |
28725321 |
gccatgaaccatgttgaatggaatacccccttctcgaattgcattattgagctgggacctaagaatgaaaaaatagaaacgagaaa |
28725406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 28710547 - 28710632
Alignment:
| Q |
1 |
gccatgaaccatgttgaatgggacacccccttctcgaattgcattattaagctcagacctaagaatggaaaaatagaaacgagaaa |
86 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||| |||||||||| |||||||||| ||||| |||||||||||| |
|
|
| T |
28710547 |
gccatgaacagtgttgaatgggacacccccttctcgaattgtattcttaagctcaggcctaagaatgaaaaaacagaaacgagaaa |
28710632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 28717894 - 28717979
Alignment:
| Q |
1 |
gccatgaaccatgttgaatgggacacccccttctcgaattgcattattaagctcagacctaagaatggaaaaatagaaacgagaaa |
86 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||| |||||||||| |||||||||| ||||| |||||||||||| |
|
|
| T |
28717894 |
gccatgaacagtgttgaatgggacacccccttctcgaattgtattcttaagctcaggcctaagaatgaaaaaacagaaacgagaaa |
28717979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 28625567 - 28625633
Alignment:
| Q |
1 |
gccatgaaccatgttgaatgggacacccccttctcgaattgcattattaagctcagacctaagaatg |
67 |
Q |
| |
|
||||||||| ||||||||||||||||| |||| |||||||||||| |||||| | ||| |||||||| |
|
|
| T |
28625567 |
gccatgaacaatgttgaatgggacaccgccttttcgaattgcattcttaagcccggacttaagaatg |
28625633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 28739312 - 28739354
Alignment:
| Q |
25 |
acccccttctcgaattgcattattaagctcagacctaagaatg |
67 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
28739312 |
acccccttctcgaattgcattattaagctcggacctaaaaatg |
28739354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University