View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9431_low_2 (Length: 508)
Name: NF9431_low_2
Description: NF9431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9431_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 11 - 492
Target Start/End: Complemental strand, 35045138 - 35044633
Alignment:
| Q |
11 |
caaagggcatcatggtatggttccgtcagtggattttatcccatttttattcaattaaggtttgaagtgaaataaaataagagaatgtggtagttgtgat |
110 |
Q |
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||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35045138 |
caaagggcatcatggtatggttcagtcagtggattttatcacatttttattcaattaaggtttgaagtgaaataaaataagagaatgtggtagttgtgat |
35045039 |
T |
|
| Q |
111 |
taaagagtagttagaaagctagaagtgagttatttaagttatt---------------------caagtcacctattctcaatttaagttgtttttaagt |
189 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||| ||| |
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| T |
35045038 |
tagagagtagttagaaagctagaagtgagttatttaagttttttttttcttgagaaaacttcttcaagtcacctattctcaatttaagatgttttaaagg |
35044939 |
T |
|
| Q |
190 |
tgatttaataaattaattgatgtcaagttactcaaagtgcatttggaaattattggtttgattaacttatttatttaatccgttcatatttctgtcttga |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
35044938 |
tgatttaataaattaattgatgtcaagttactcaaagtgcatttggaaattattggtttcattaacttttttatttaatccgttcatatttctgtcttga |
35044839 |
T |
|
| Q |
290 |
tgattactccattctcaatttcttttttcttctc-tcatgatcctcgcattgagcttccttcatgtagatcaattgttacgatagttaaactgcaccaat |
388 |
Q |
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||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35044838 |
tgattactctattctcaatttcttttttcttctcttcatgatcctcgctttgagcttctttcatgt-gatcaattgttacgatagttaaactgcaccaat |
35044740 |
T |
|
| Q |
389 |
tgaca----cgattgtgcacatatctannnnnnnnacaatagattattgcagtatttttccatgttatctaaatggttgtacaaatattatttcttttat |
484 |
Q |
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|| || |||||||||| || |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35044739 |
tggcacgatcgattgtgcagatgtcta-tttttttacaataaattattgcagtatttttccatgttatctaaatggttgtacaaatattatttcttttat |
35044641 |
T |
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| Q |
485 |
aaaaatat |
492 |
Q |
| |
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|||||||| |
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| T |
35044640 |
aaaaatat |
35044633 |
T |
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