View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9431_low_22 (Length: 208)
Name: NF9431_low_22
Description: NF9431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9431_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 12339239 - 12339414
Alignment:
| Q |
18 |
atcggtaaactttttcaaaagcataataatacaacaagcaaagttgacaagaatgaagggccaatcaacttcagtagtgtcatcagatggcaaccaaagg |
117 |
Q |
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| T |
12339239 |
atcggtaaactttttcaaaagcataataatacaacaagcaaagttgacaagaatgaagggccaataaacttcagcagtgtcatcagatggcaaccaaagg |
12339338 |
T |
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| Q |
118 |
acaacaggtcttacaccaattctatacaatgcttcttcgacgaagtttctgaatccatcgtacacatcacataaca |
193 |
Q |
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| T |
12339339 |
acaacaggtcttacaccaattctatacaatgcttcttcaacgaagtttctaaatccatcgtacacatcacataaca |
12339414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 31 - 193
Target Start/End: Original strand, 12393121 - 12393289
Alignment:
| Q |
31 |
ttcaaaagcataataatacaacaagcaaagttgacaagaatgaagggccaatcaa---cttcagtag---tgtcatcagatggcaaccaaaggacaacag |
124 |
Q |
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| T |
12393121 |
ttcaaaagcataataataatacaaccaaagttgacaagaataaaaggccaaacaatatcttcagtagtaatttcatcagatggtaaccacaccacagtag |
12393220 |
T |
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| Q |
125 |
gtcttacaccaattctatacaatgcttcttcgacgaagtttctgaatccatcgtacacatcacataaca |
193 |
Q |
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| T |
12393221 |
tttttacaccaattccgtacaatgcttcttccacggaacttctgaatccatggtacacgtcgcataaca |
12393289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 12347394 - 12347466
Alignment:
| Q |
97 |
tcatcagatggcaaccaaaggacaacaggtcttacaccaattctatacaatgcttcttcgacgaagtttctga |
169 |
Q |
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| T |
12347394 |
tcatcagatggtaaccaaatgacaacaggtcttacatcaattctatacaacgcttgctcgacggaatttctga |
12347466 |
T |
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