View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9431_low_4 (Length: 382)
Name: NF9431_low_4
Description: NF9431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9431_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 4457912 - 4457547
Alignment:
| Q |
1 |
aatgatattcatggttcaacaattacgagcaaacaagatgaactcatttcacatgcttttgggaaaggaaaactatagaaaggtttgactaagttcttca |
100 |
Q |
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| T |
4457912 |
aatgatattcatggttcaacaattacgagcaaacaagatgaactcatttcacatgcttttgggaaaggaaaactatagaaagatttgactaagttcttca |
4457813 |
T |
|
| Q |
101 |
atgtgttgaactttcgtataacacatatcctcgaacaccaacgttccagcattctacactcaccattaaccattgaggttgaagataaactttcagagct |
200 |
Q |
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| T |
4457812 |
atatgttgaactttcatataacacatatactcgaacaccaacattccagcattctacactcaccattaaccattgaggttgaagatcgactttgatagct |
4457713 |
T |
|
| Q |
201 |
atttatgatcac-taaccaccatgcatcatctctatttgagcttgaaannnnnnnagggaaaattagagttttcaaattgtgtttgcttaggtggaaggt |
299 |
Q |
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| T |
4457712 |
atttatgatcgcttaaccaccatgcatcatctctatttgagcttgaagaaattttagggaaaattagagttttcaaattgtgtttgcttaggtggaagct |
4457613 |
T |
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| Q |
300 |
gacatggaagaccacttcattggtt---gtcacaagtcatcgtgtttaatgatcaaagatgacaga |
362 |
Q |
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| T |
4457612 |
aacatggaagaccacttcattgatttacgtcacaaatcatcgtgtttaatgatcaaagatgacaga |
4457547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 32733447 - 32733539
Alignment:
| Q |
94 |
ttcttcaatgtgttgaactttcgtataacacatatcctcgaacaccaacgttccagcattctacactcaccattaaccattgaggttgaagat |
186 |
Q |
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| T |
32733447 |
ttcttcaatgtattggcctttggtataacacatcttctaggacaccaacaatcaaacattctacattcatcattaaacatggaggttgaagat |
32733539 |
T |
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