View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9431_low_7 (Length: 325)

Name: NF9431_low_7
Description: NF9431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9431_low_7
NF9431_low_7
[»] chr6 (2 HSPs)
chr6 (1-325)||(8697916-8698239)
chr6 (18-94)||(11385812-11385888)
[»] chr3 (3 HSPs)
chr3 (1-323)||(20596915-20597238)
chr3 (259-322)||(3814242-3814305)
chr3 (7-94)||(3814478-3814565)
[»] chr4 (4 HSPs)
chr4 (1-94)||(37102307-37102400)
chr4 (159-325)||(20623068-20623233)
chr4 (11-94)||(20622912-20622995)
chr4 (181-245)||(37102156-37102220)
[»] chr5 (4 HSPs)
chr5 (7-99)||(24505974-24506066)
chr5 (18-94)||(21793446-21793522)
chr5 (11-94)||(23331295-23331378)
chr5 (159-325)||(23331451-23331616)
[»] chr8 (2 HSPs)
chr8 (7-94)||(23705951-23706038)
chr8 (175-245)||(23705794-23705864)
[»] chr2 (1 HSPs)
chr2 (54-94)||(42732954-42732994)


Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 8697916 - 8698239
Alignment:
Q  1 atcttagaagtggttcttggagcttctaattgctgatttaggtggaccaagactgtgtaagacttacacttttattagtgaccaacaaaaggtagtttta 100  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  8697916 atcttggaagtggttcttggagcttctaattggtgatttaggtggaccaagattgtgtaagacttacacttttattagtgaccagcaaaaggtagtttta 8698015  T
Q  101 cttcattattgtctttttaaatgttagacnnnnnnnctgtttatttaacaatcacaattacattgcagggtcttttgccggctatggatgagttactacc 200  Q
    ||||||||||||||||||| |||||||||       ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  8698016 cttcattattgtctttttacatgttagactttttttctgtttaattaacaatcacaattacattgcagggtcttttgccagctatggatgagttactgcc 8698115  T
Q  201 tgatgttgatcaaaggttttgtgtcaggcatctgtacaataactttagnnnnnnnncatcctgggaaaaagttaaaggagttgatgtggagggcagcaaa 300  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||    
T  8698116 tgatgttgatcaaaggttttgtgtaaggcatctgtacaataactttag-gaaaaaacatcctgggaaaaagttaaaggagttgatgtggagggcagcaaa 8698214  T
Q  301 agcaacctatgaaaatgcattcaat 325  Q
    |||||| ||||||||||||||||||    
T  8698215 agcaacatatgaaaatgcattcaat 8698239  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 11385812 - 11385888
Alignment:
Q  18 tggagcttctaattgctgatttaggtggaccaagactgtgtaagacttacacttttattagtgaccaacaaaaggta 94  Q
    ||||| |||| ||||||||||| |||||  ||||||| || || ||||||||| | ||||||||||| |||||||||    
T  11385812 tggagattctcattgctgatttgggtggcacaagactttgcaatacttacactataattagtgaccagcaaaaggta 11385888  T

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Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 20596915 - 20597238
Alignment:
Q  1 atcttagaagtggttcttggagcttctaattgctgatttaggtggaccaagactgtgtaagacttacacttttattagtgaccaacaaaaggtagtttta 100  Q
    ||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20596915 atcttggaattggttcttggagctactaattgctgatttaggtggaccaagactatgtaagacttacacttttattagtgaccaacaaaaggtagtttta 20597014  T
Q  101 cttcattattgtctttttaaatgttagacnnnnnnn--ctgtttatttaacaatcacaattacattgcagggtcttttgccggctatggatgagttacta 198  Q
    |||||||||||||||||||  ||||||||         |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  20597015 cttcattattgtctttttacttgttagacttttttttcctgtttatttaacaatcacaattacattgcagggtcttttgccgactatggatgagttacta 20597114  T
Q  199 cctgatgttgatcaaaggttttgtgtcaggcatctgtacaataactttagnnnnnnnncatcctgggaaaaagttaaaggagttgatgtggagggcagca 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||    
T  20597115 cctgatgttgatcaaaggttttgtgtcaggcatctgtacaataactttag-gaaaaaacatcctgggaaaaagttaaaggagttgatgtggagggcagca 20597213  T
Q  299 aaagcaacctatgaaaatgcattca 323  Q
    |||||||| ||||||||||||||||    
T  20597214 aaagcaacttatgaaaatgcattca 20597238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 322
Target Start/End: Complemental strand, 3814305 - 3814242
Alignment:
Q  259 tcctgggaaaaagttaaaggagttgatgtggagggcagcaaaagcaacctatgaaaatgcattc 322  Q
    |||||| || ||||| ||||| || |||||||||||||||||| |||| ||||| |||||||||    
T  3814305 tcctggaaagaagttgaaggaattaatgtggagggcagcaaaatcaacttatgagaatgcattc 3814242  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 3814565 - 3814478
Alignment:
Q  7 gaagtggttcttggagcttctaattgctgatttaggtggaccaagactgtgtaagacttacacttttattagtgaccaacaaaaggta 94  Q
    ||||||||| ||||| ||  | |||| ||| ||||||||||| ||| | || ||||||||||| || |||||||| ||||||||||||    
T  3814565 gaagtggtttttggaactcttgattggtgacttaggtggacccagattatgcaagacttacaccttcattagtgatcaacaaaaggta 3814478  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 37102400 - 37102307
Alignment:
Q  1 atcttagaagtggttcttggagcttctaattgctgatttaggtggaccaagactgtgtaagacttacacttttattagtgaccaacaaaaggta 94  Q
    ||||| ||| ||||| |||||||  || |||||||| |||||||||||  || ||||   ||||||||||||||||||||||||||||||||||    
T  37102400 atcttggaaatggtttttggagcagctcattgctgacttaggtggacctggattgtgcttgacttacacttttattagtgaccaacaaaaggta 37102307  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 159 - 325
Target Start/End: Original strand, 20623068 - 20623233
Alignment:
Q  159 tacattgcagggtcttttgccggctatggatgagttactacctgatgttgatcaaaggttttgtgtcaggcatctgtacaataactttagnnnnnnnnca 258  Q
    ||||||| |||| ||||| || |||||||||||  |||| ||||  ||||| ||||| || ||||| |||||||| ||||| ||||||||         |    
T  20623068 tacattgtagggacttttaccagctatggatgaactacttcctggagttgaccaaagattatgtgtgaggcatctttacaacaactttaggaagaaat-a 20623166  T
Q  259 tcctgggaaaaagttaaaggagttgatgtggagggcagcaaaagcaacctatgaaaatgcattcaat 325  Q
    |||||| || ||||| ||||| |||||||||| |||||||||||| |  ||||| ||||||||||||    
T  20623167 tcctggaaagaagttgaaggaattgatgtggaaggcagcaaaagccagttatgataatgcattcaat 20623233  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 20622912 - 20622995
Alignment:
Q  11 tggttcttggagcttctaattgctgatttaggtggaccaagactgtgtaagacttacacttttattagtgaccaacaaaaggta 94  Q
    ||||| ||||| || || ||||||||| ||||||| || ||| ||||   ||||||||||||||| ||||| ||||||||||||    
T  20622912 tggtttttggaactactcattgctgatctaggtggtcctagattgtgcttgacttacacttttataagtgatcaacaaaaggta 20622995  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 37102220 - 37102156
Alignment:
Q  181 gctatggatgagttactacctgatgttgatcaaaggttttgtgtcaggcatctgtacaataactt 245  Q
    ||||||||||||||||| ||||  || |||||||  |||||||| |||||||| ||||| |||||    
T  37102220 gctatggatgagttacttcctggagtggatcaaatattttgtgtgaggcatctttacaacaactt 37102156  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 24505974 - 24506066
Alignment:
Q  7 gaagtggttcttggagcttctaattgctgatttaggtggaccaagactgtgtaagacttacacttttattagtgaccaacaaaaggtagtttt 99  Q
    ||||||||| ||||||||||| |||||||| |||||||||   ||  |||| ||||| ||||| ||||||||||| |||||||||||| ||||    
T  24505974 gaagtggtttttggagcttctgattgctgacttaggtggaagcaggttgtgcaagacatacacctttattagtgatcaacaaaaggtaatttt 24506066  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 21793522 - 21793446
Alignment:
Q  18 tggagcttctaattgctgatttaggtggaccaagactgtgtaagacttacacttttattagtgaccaacaaaaggta 94  Q
    |||||||||| ||||||||||| |||||  ||||||| || || ||||||||| | ||||||||||| |||||||||    
T  21793522 tggagcttctcattgctgatttgggtggcacaagactttgcaatacttacactataattagtgaccagcaaaaggta 21793446  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 23331295 - 23331378
Alignment:
Q  11 tggttcttggagcttctaattgctgatttaggtggaccaagactgtgtaagacttacacttttattagtgaccaacaaaaggta 94  Q
    ||||| |||||||| || ||||||||||||||||| |  ||| ||||   ||||||||||||||| ||||| ||||||||||||    
T  23331295 tggtttttggagctacttattgctgatttaggtggtcatagattgtgcttgacttacacttttataagtgatcaacaaaaggta 23331378  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 325
Target Start/End: Original strand, 23331451 - 23331616
Alignment:
Q  159 tacattgcagggtcttttgccggctatggatgagttactacctgatgttgatcaaaggttttgtgtcaggcatctgtacaataactttagnnnnnnnnca 258  Q
    ||||||| |||| ||||| || |||||||||||  |||| ||||  ||||| ||||| || ||||| |||||||| ||||| ||||||||         |    
T  23331451 tacattgtagggacttttaccagctatggatgaactacttcctggagttgaccaaagattctgtgtgaggcatctttacaacaactttaggaagaaat-a 23331549  T
Q  259 tcctgggaaaaagttaaaggagttgatgtggagggcagcaaaagcaacctatgaaaatgcattcaat 325  Q
    |||||| || ||||| ||||| |||||||||| ||||||||| || |  ||||| ||||||||||||    
T  23331550 tcctggaaagaagttgaaggaattgatgtggaaggcagcaaaggccagttatgataatgcattcaat 23331616  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 23706038 - 23705951
Alignment:
Q  7 gaagtggttcttggagcttctaattgctgatttaggtggaccaagactgtgtaagacttacacttttattagtgaccaacaaaaggta 94  Q
    ||||||||| ||||| || || |||| ||| ||||||||| | ||| | || ||||||||||| ||||||||||| ||||||||||||    
T  23706038 gaagtggtttttggaactcctgattggtgacttaggtggaactagattatgcaagacttacacatttattagtgatcaacaaaaggta 23705951  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 23705864 - 23705794
Alignment:
Q  175 ttgccggctatggatgagttactacctgatgttgatcaaaggttttgtgtcaggcatctgtacaataactt 245  Q
    ||||| |||||||||||  ||||||| ||||| || ||||| ||||||||||| || || |||||||||||    
T  23705864 ttgcctgctatggatgaactactaccggatgtagaacaaagattttgtgtcagacacctttacaataactt 23705794  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 42732994 - 42732954
Alignment:
Q  54 tgtgtaagacttacacttttattagtgaccaacaaaaggta 94  Q
    |||||||||| ||||||||||| ||||| ||||||||||||    
T  42732994 tgtgtaagacatacacttttataagtgatcaacaaaaggta 42732954  T

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