View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9432_low_1 (Length: 619)
Name: NF9432_low_1
Description: NF9432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9432_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 5 - 601
Target Start/End: Complemental strand, 53123740 - 53123142
Alignment:
| Q |
5 |
tgggtagattattctcagcatagttttaggaacagtcactggactaattggttctgtaatctttcacattggtggttcgttgtgctgttcagtatctatt |
104 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53123740 |
tgggaagatcattctcagcatagttttaggaacagtcactggactaattggttctgtaatctttcacattggtggttcgttgtgctgttcagtatctatt |
53123641 |
T |
|
| Q |
105 |
cttcccaaaaattgcctcaaagacactgcaaacagctttaacaaacgaaaaccatttgcttggttcaaatccaacccggatactacaaaacaaaactatt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
53123640 |
cttcccaaaaattgcctcaaagacactgcaaacagctttaacaaacgaaaaccatttgcttggttcgaatccaacccggatactacaaaacaaaactatt |
53123541 |
T |
|
| Q |
205 |
ctggaaaatggtctcaaaaggctaataccctttgggagcaattcaccagcgtataagagaaaaccaaaaccagtgaagaggcaaatacagatggaactaa |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
53123540 |
ctggaaaatggtctcaaaaggctaataccctttgggagcaattcaccagcgtataagagaaaaccaaaaccagtgaagaggcaaatacagatggaactga |
53123441 |
T |
|
| Q |
305 |
acttcttggtattatgaaaggtcttcaatattttcatttcacttgtgtgcctcagattttgcacttatgtcaaaattttgtttcttttcctctttgtgct |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53123440 |
acttcttggtattatgaaaggtcttcaatattttcatttcacttgtgtgcctcagattttgcacttatgtcaaaattttgtttcttttcctctttgtgct |
53123341 |
T |
|
| Q |
405 |
tttaaannnnnnncactctt--cacagttaccaagaattgcagtgtaagttctcagtctataattgcctttttcgagttttctattcatgcttcttatca |
502 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53123340 |
tttaaatttttttcactcttcacacagttaccaagaattgcagtgtaagttctcagtctataattgcctttttcgagttttctattcatgcttcttatca |
53123241 |
T |
|
| Q |
503 |
atatgacgaaggaaatccaagtttttgcttgtaactttgttccagtccctctgaatattgttcaaatcatcaaaagcatgtatagattgatatacctat |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53123240 |
atatgacgaaggaaatccaagtttttgcttgtacctttgttccagtccctctgaatattgctcaaatcatcaaaagcatgtatagattgatatacctat |
53123142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 319 - 367
Target Start/End: Complemental strand, 6504730 - 6504682
Alignment:
| Q |
319 |
tgaaaggtcttcaatattttcatttcacttgtgtgcctcagattttgca |
367 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
6504730 |
tgaaaggtcttcaatatcttcattttacttgtgtgcctcagattttgca |
6504682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 6505112 - 6505046
Alignment:
| Q |
112 |
aaaattgcctcaaagacactgcaaacagctttaacaaacgaaaaccatttgcttggttcaaatccaa |
178 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| ||||| ||||||||| |||||||||||| ||||| |
|
|
| T |
6505112 |
aaaattgcctcaaagacactccaagtagctttgacaaaagaaaaccatatgcttggttcaagtccaa |
6505046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 6505246 - 6505155
Alignment:
| Q |
10 |
agattattctcagcatagttttaggaacagtcactggactaattggttctgtaatctttcacattggtggttcgttgtgctgttcagtatcta |
102 |
Q |
| |
|
|||||||| | ||||||||||||||| | || |||||| ||||||||||||| ||||| |||| ||| ||||||||| |||| ||||||| |
|
|
| T |
6505246 |
agattattattagcatagttttaggagctgttactggattaattggttctgttctcttt-gcattcgtgattcgttgtgttgtttggtatcta |
6505155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University