View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9432_low_10 (Length: 298)
Name: NF9432_low_10
Description: NF9432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9432_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 92 - 288
Target Start/End: Original strand, 9959947 - 9960142
Alignment:
| Q |
92 |
cattttcatcgcagatttaggaaagtgataggattcattaatttttaactgagtttcaatgttcgctatattttattttccttatttattcaagcatgtt |
191 |
Q |
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| T |
9959947 |
cattttcatcgcagatttaggaaagtgataggattcattaatttttaactgagtttcaatgttcactatattttattttccttatttattcaagcatgtt |
9960046 |
T |
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| Q |
192 |
ctttctttcttttacacaatcttattcaaacatgatattgctatgcacgtttggcattatgtttttgatcttgggctttcctgttctatcagtatta |
288 |
Q |
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| T |
9960047 |
ctttctttcttttacacaatcttatt-aaacatgatattgctatgcacgtttggcattatgtttttgatcttgggctttcctgttctatcagtatta |
9960142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 9959823 - 9959908
Alignment:
| Q |
14 |
catcatccctaaccttaagtttcacatgnnnnnnnntaacagatggccttctcatcatatttgatatttcattggtgacattttca |
99 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||| |||| |
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| T |
9959823 |
catcgtccctaaccttaagtttcacatgaaaaaaaataacagatggctttctcatcatatttgatatttcattgttgacatgttca |
9959908 |
T |
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