View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9432_low_11 (Length: 290)

Name: NF9432_low_11
Description: NF9432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9432_low_11
NF9432_low_11
[»] chr8 (32 HSPs)
chr8 (12-114)||(15197333-15197435)
chr8 (12-113)||(5957831-5957932)
chr8 (12-114)||(12831047-12831149)
chr8 (12-114)||(34012294-34012396)
chr8 (12-114)||(40423941-40424043)
chr8 (14-114)||(37038479-37038579)
chr8 (12-114)||(504119-504221)
chr8 (12-114)||(1179938-1180040)
chr8 (12-114)||(14547922-14548024)
chr8 (12-114)||(23122595-23122697)
chr8 (12-114)||(10284629-10284731)
chr8 (12-114)||(44507085-44507187)
chr8 (185-274)||(5275587-5275674)
chr8 (12-114)||(15048180-15048281)
chr8 (12-109)||(10621085-10621182)
chr8 (12-114)||(43414579-43414681)
chr8 (12-93)||(8841430-8841511)
chr8 (12-113)||(9122196-9122287)
chr8 (35-114)||(14055613-14055692)
chr8 (46-114)||(20074966-20075034)
chr8 (12-114)||(15258927-15259029)
chr8 (12-114)||(16383377-16383479)
chr8 (12-114)||(32032725-32032826)
chr8 (49-114)||(30479509-30479574)
chr8 (12-114)||(4854861-4854963)
chr8 (12-114)||(34307216-34307318)
chr8 (12-114)||(38229429-38229530)
chr8 (12-114)||(42221515-42221617)
chr8 (12-114)||(17443825-17443927)
chr8 (12-114)||(24307791-24307893)
chr8 (51-114)||(24307629-24307692)
chr8 (45-114)||(30183906-30183975)
[»] chr7 (37 HSPs)
chr7 (12-114)||(7389389-7389491)
chr7 (12-114)||(40957707-40957809)
chr7 (12-114)||(3434562-3434664)
chr7 (12-111)||(3783998-3784097)
chr7 (12-114)||(8080381-8080483)
chr7 (12-114)||(19436185-19436287)
chr7 (12-114)||(36361911-36362013)
chr7 (12-114)||(38267040-38267142)
chr7 (12-114)||(19329842-19329944)
chr7 (12-114)||(35137533-35137635)
chr7 (12-114)||(36362026-36362128)
chr7 (12-114)||(38837217-38837319)
chr7 (12-113)||(32951491-32951592)
chr7 (12-114)||(4999512-4999614)
chr7 (12-111)||(3694370-3694469)
chr7 (12-114)||(38044197-38044299)
chr7 (12-114)||(8238212-8238315)
chr7 (12-114)||(36208173-36208275)
chr7 (12-109)||(35522881-35522978)
chr7 (12-114)||(18207180-18207281)
chr7 (12-114)||(21234401-21234503)
chr7 (20-114)||(46374808-46374902)
chr7 (12-114)||(11044188-11044280)
chr7 (48-114)||(10343597-10343663)
chr7 (12-114)||(22343361-22343463)
chr7 (12-114)||(39255922-39256023)
chr7 (12-114)||(40846111-40846213)
chr7 (12-114)||(41915741-41915843)
chr7 (40-114)||(46033827-46033901)
chr7 (12-73)||(16374822-16374883)
chr7 (49-114)||(32564461-32564526)
chr7 (12-114)||(31735884-31735979)
chr7 (32-114)||(12310906-12310986)
chr7 (45-114)||(45223042-45223111)
chr7 (14-114)||(7727906-7728006)
chr7 (12-114)||(26296644-26296746)
chr7 (12-80)||(27744307-27744375)
[»] chr2 (32 HSPs)
chr2 (12-114)||(5574486-5574588)
chr2 (12-114)||(17473020-17473122)
chr2 (12-114)||(27864704-27864806)
chr2 (12-111)||(28863458-28863557)
chr2 (12-114)||(9058480-9058582)
chr2 (12-114)||(33436098-33436200)
chr2 (14-114)||(4060685-4060785)
chr2 (12-111)||(19930818-19930917)
chr2 (12-114)||(7465733-7465835)
chr2 (12-114)||(10249380-10249482)
chr2 (12-114)||(13438343-13438445)
chr2 (14-114)||(32505648-32505748)
chr2 (12-114)||(30915463-30915565)
chr2 (12-114)||(40701478-40701580)
chr2 (12-114)||(20700815-20700917)
chr2 (12-114)||(28381653-28381755)
chr2 (35-114)||(38882835-38882913)
chr2 (12-114)||(40613900-40614002)
chr2 (12-114)||(38273140-38273242)
chr2 (16-114)||(2533124-2533221)
chr2 (12-114)||(26891502-26891604)
chr2 (12-114)||(42257193-42257295)
chr2 (12-108)||(3439985-3440081)
chr2 (12-113)||(41575138-41575240)
chr2 (12-114)||(45097733-45097835)
chr2 (46-114)||(33436211-33436279)
chr2 (12-114)||(17820002-17820104)
chr2 (12-114)||(38732354-38732456)
chr2 (16-114)||(43490121-43490219)
chr2 (12-93)||(2997485-2997566)
chr2 (45-114)||(17823784-17823853)
chr2 (12-114)||(36168836-36168938)
[»] chr5 (25 HSPs)
chr5 (14-114)||(14831814-14831914)
chr5 (12-114)||(2740274-2740376)
chr5 (12-114)||(40145407-40145509)
chr5 (12-111)||(18520882-18520981)
chr5 (12-114)||(33149636-33149738)
chr5 (12-114)||(35785199-35785301)
chr5 (12-114)||(36732940-36733042)
chr5 (12-114)||(13811652-13811754)
chr5 (12-114)||(35943890-35943992)
chr5 (16-114)||(42414304-42414402)
chr5 (12-114)||(28177775-28177877)
chr5 (14-114)||(31008988-31009088)
chr5 (12-114)||(15409608-15409710)
chr5 (12-114)||(26720516-26720618)
chr5 (12-114)||(26990265-26990367)
chr5 (12-113)||(36875610-36875702)
chr5 (23-114)||(41470425-41470516)
chr5 (12-114)||(6679698-6679800)
chr5 (46-114)||(33825356-33825424)
chr5 (12-114)||(3921263-3921365)
chr5 (12-114)||(2252166-2252268)
chr5 (13-114)||(38296203-38296304)
chr5 (16-68)||(31132390-31132442)
chr5 (12-114)||(6259999-6260101)
chr5 (12-114)||(39688895-39688997)
[»] chr4 (33 HSPs)
chr4 (12-114)||(6034044-6034146)
chr4 (12-114)||(41236347-41236449)
chr4 (12-114)||(11511460-11511562)
chr4 (12-114)||(48183047-48183149)
chr4 (12-114)||(50052426-50052528)
chr4 (12-114)||(480445-480547)
chr4 (12-114)||(3481654-3481756)
chr4 (12-114)||(29239886-29239988)
chr4 (12-114)||(42044365-42044467)
chr4 (12-114)||(29234243-29234345)
chr4 (16-114)||(54473535-54473633)
chr4 (14-114)||(50526171-50526271)
chr4 (12-114)||(31910192-31910294)
chr4 (12-114)||(24995105-24995207)
chr4 (12-114)||(23608235-23608337)
chr4 (12-114)||(32766958-32767060)
chr4 (12-114)||(40574779-40574881)
chr4 (12-109)||(53352564-53352660)
chr4 (12-114)||(29977885-29977987)
chr4 (12-114)||(47986208-47986310)
chr4 (12-114)||(50813890-50813992)
chr4 (12-75)||(41823921-41823984)
chr4 (12-114)||(19670714-19670816)
chr4 (12-114)||(44536744-44536845)
chr4 (12-114)||(55475191-55475293)
chr4 (49-114)||(55079749-55079814)
chr4 (46-114)||(47104544-47104612)
chr4 (16-114)||(29547961-29548059)
chr4 (12-93)||(17983741-17983822)
chr4 (13-106)||(28480267-28480360)
chr4 (13-106)||(28481142-28481235)
chr4 (13-106)||(28482017-28482110)
chr4 (49-114)||(18924530-18924595)
[»] chr3 (35 HSPs)
chr3 (12-114)||(49607414-49607516)
chr3 (12-114)||(53982011-53982113)
chr3 (12-114)||(33644200-33644302)
chr3 (12-109)||(52629305-52629402)
chr3 (12-114)||(8076393-8076495)
chr3 (12-114)||(27714889-27714991)
chr3 (12-114)||(54868893-54868995)
chr3 (12-113)||(31456690-31456791)
chr3 (12-114)||(11095353-11095453)
chr3 (12-114)||(17470405-17470507)
chr3 (12-114)||(33118849-33118951)
chr3 (12-110)||(48587089-48587187)
chr3 (29-114)||(36707439-36707524)
chr3 (12-114)||(9562999-9563101)
chr3 (12-114)||(26141530-26141632)
chr3 (12-109)||(26754700-26754797)
chr3 (12-114)||(11347920-11348022)
chr3 (12-114)||(20764913-20765015)
chr3 (12-114)||(14623837-14623939)
chr3 (12-114)||(24699952-24700054)
chr3 (12-110)||(30801731-30801829)
chr3 (12-114)||(41189762-41189864)
chr3 (12-114)||(47531865-47531967)
chr3 (12-114)||(48375704-48375806)
chr3 (12-114)||(51419358-51419460)
chr3 (12-113)||(13898053-13898154)
chr3 (35-114)||(35536626-35536705)
chr3 (12-114)||(11907371-11907473)
chr3 (46-114)||(8956762-8956830)
chr3 (33-93)||(43745767-43745827)
chr3 (56-103)||(32605956-32606003)
chr3 (52-114)||(36331416-36331478)
chr3 (49-114)||(45058588-45058652)
chr3 (45-114)||(21746212-21746283)
chr3 (12-92)||(36331327-36331407)
[»] chr1 (33 HSPs)
chr1 (14-114)||(2581915-2582015)
chr1 (12-114)||(9474874-9474976)
chr1 (12-114)||(47452318-47452420)
chr1 (16-114)||(48716284-48716382)
chr1 (14-114)||(51898683-51898783)
chr1 (12-114)||(3000319-3000421)
chr1 (16-114)||(38632323-38632421)
chr1 (12-114)||(27564733-27564835)
chr1 (12-114)||(38595154-38595256)
chr1 (15-114)||(37649198-37649297)
chr1 (12-114)||(43132-43234)
chr1 (12-114)||(8346386-8346488)
chr1 (12-114)||(50630458-50630560)
chr1 (12-111)||(44548374-44548473)
chr1 (12-114)||(32813247-32813349)
chr1 (12-114)||(41758805-41758907)
chr1 (14-113)||(11152378-11152476)
chr1 (16-111)||(26274435-26274530)
chr1 (12-107)||(26440741-26440836)
chr1 (12-114)||(49811525-49811627)
chr1 (12-114)||(50590998-50591100)
chr1 (12-93)||(45044558-45044639)
chr1 (12-84)||(13414791-13414863)
chr1 (46-114)||(23597123-23597191)
chr1 (12-114)||(5958998-5959100)
chr1 (14-71)||(48489343-48489400)
chr1 (16-109)||(44453984-44454077)
chr1 (12-114)||(47748443-47748544)
chr1 (14-114)||(3302533-3302633)
chr1 (35-94)||(44334191-44334250)
chr1 (12-114)||(37926436-37926538)
chr1 (12-114)||(41608491-41608593)
chr1 (77-109)||(34340101-34340133)
[»] chr6 (20 HSPs)
chr6 (12-114)||(32869678-32869780)
chr6 (12-114)||(11427616-11427720)
chr6 (12-111)||(22880656-22880755)
chr6 (12-114)||(31109398-31109500)
chr6 (12-114)||(6209463-6209565)
chr6 (12-114)||(17598554-17598656)
chr6 (12-114)||(29857827-29857929)
chr6 (12-111)||(23128125-23128224)
chr6 (12-114)||(31976248-31976350)
chr6 (12-114)||(12732482-12732584)
chr6 (12-114)||(31110759-31110859)
chr6 (12-114)||(15508022-15508124)
chr6 (32-114)||(15832577-15832659)
chr6 (12-114)||(15990040-15990142)
chr6 (12-114)||(30341358-30341460)
chr6 (12-110)||(28536486-28536582)
chr6 (12-113)||(946377-946478)
chr6 (12-114)||(31953028-31953130)
chr6 (12-92)||(4231570-4231650)
chr6 (12-109)||(9379710-9379807)
[»] scaffold1268 (1 HSPs)
scaffold1268 (12-114)||(927-1029)
[»] scaffold1267 (1 HSPs)
scaffold1267 (12-114)||(927-1029)
[»] scaffold0237 (1 HSPs)
scaffold0237 (12-114)||(4029-4131)
[»] scaffold0321 (1 HSPs)
scaffold0321 (12-114)||(10107-10209)
[»] scaffold0110 (1 HSPs)
scaffold0110 (12-114)||(8861-8963)
[»] scaffold0018 (1 HSPs)
scaffold0018 (12-98)||(152514-152600)
[»] scaffold0316 (1 HSPs)
scaffold0316 (12-71)||(17097-17156)


Alignment Details
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 15197435 - 15197333
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||    
T  15197435 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcatta 15197336  T
Q  112 ctc 114  Q
    |||    
T  15197335 ctc 15197333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 5957932 - 5957831
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||| ||||||||||||||||    
T  5957932 agagaaagtgtgattgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagaatgtctatgtatcatta 5957833  T
Q  112 ct 113  Q
    ||    
T  5957832 ct 5957831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 12831149 - 12831047
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||| ||| |||||||| |||||||| |||||||| |||||||||||||||||    
T  12831149 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcatta 12831050  T
Q  112 ctc 114  Q
    |||    
T  12831049 ctc 12831047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 34012294 - 34012396
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||| ||| |||||||| ||||||| ||||||||| |||||||||||||||||    
T  34012294 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcatta 34012393  T
Q  112 ctc 114  Q
    |||    
T  34012394 ctc 34012396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 40423941 - 40424043
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| ||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||| || ||||||||||||||    
T  40423941 agagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtatctatgtatcatta 40424040  T
Q  112 ctc 114  Q
    |||    
T  40424041 ctc 40424043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 37038579 - 37038479
Alignment:
Q  14 agaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattact 113  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||   ||||||||||||||||||    
T  37038579 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattact 37038480  T
Q  114 c 114  Q
    |    
T  37038479 c 37038479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 504119 - 504221
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    |||||| |||||||| |||||| |||||||||||||||||||||||||||| ||| |||||||  ||||||||||||||||| |||||||||||||||||    
T  504119 agagaatgtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcatta 504218  T
Q  112 ctc 114  Q
    |||    
T  504219 ctc 504221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 1179938 - 1180040
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| ||||| |||||| |||||||||||||||||||||| ||| |||||||| ||||||| ||||||||| |||||||||||||||||    
T  1179938 agagaaagtgtgcttgtgcggaatccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcatta 1180037  T
Q  112 ctc 114  Q
    |||    
T  1180038 ctc 1180040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 14548024 - 14547922
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||| ||| |||||||  ||||||||||||||||| ||||||||||||| |||    
T  14548024 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaagggtgtctatgtatcttta 14547925  T
Q  112 ctc 114  Q
    |||    
T  14547924 ctc 14547922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 23122595 - 23122697
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||| ||| |||||||  |||||||||||| |||| |||||||||||||||||    
T  23122595 agagaaagtgtgcttatgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacttaagggtgtctatgtatcatta 23122694  T
Q  112 ctc 114  Q
    |||    
T  23122695 ctc 23122697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 10284629 - 10284731
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| ||||||||||||||||||| |||||||| ||| ||||||||||||||||| ||| |||| ||||||||||||||| |    
T  10284629 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagagtgtattgtcacttaagggtgtctatgtatcataa 10284728  T
Q  112 ctc 114  Q
    |||    
T  10284729 ctc 10284731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 44507085 - 44507187
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||| ||||| | |||| |||||||||||||||||||||||||||| ||| ||| |||||||||||| ||||||||| |||||||||||||||||    
T  44507085 agagaaagtatgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaagggtgtctatgtatcatta 44507184  T
Q  112 ctc 114  Q
    |||    
T  44507185 ctc 44507187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 185 - 274
Target Start/End: Original strand, 5275587 - 5275674
Alignment:
Q  185 ttttctacacatcaatacactactaaaataattaagcagcacaatcaaggaaagtttagaccaattctggtgtacaagaaaaggtttatt 274  Q
    |||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||   |||||||||||||||||||    
T  5275587 ttttttacacatcaatacactagtaaaataattaaccagcacaatcaaggaaagtttagaccaattct--agtacaagaaaaggtttatt 5275674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 15048180 - 15048281
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| |||| ||| ||||||||||||||||||| ||| |||||||| |||||||||||||||||  |||||||||||||| |    
T  15048180 agagaaagtgtgcttgtgcggggtccatgtggctacgtgtcagatttttgtgtgg-tgtcaaagggtgtattgccacctaaggatgtctatgtatcataa 15048278  T
Q  112 ctc 114  Q
    |||    
T  15048279 ctc 15048281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 10621085 - 10621182
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcat 109  Q
    ||||||||||||||| ||||||||| | ||| ||||||||||||||||||| ||| |||||||| ||||||| |||||||||  ||||||||||||||    
T  10621085 agagaaagtgtgcttgtgcgggatcgatgtggctacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcat 10621182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 43414579 - 43414681
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| ||||||||||| ||||| |||||| |||||||||| ||| |||||||| |||| |||||| |||||  |||||||||||||| |    
T  43414579 agagaaagtgtgcttgtgcgggatccatgtgaccacgtgttagatttttgtgtgggtgtcaaagggtgtgttgccatctaaggatgtctatgtatcataa 43414678  T
Q  112 ctc 114  Q
    |||    
T  43414679 ctc 43414681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 8841430 - 8841511
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaag 93  Q
    ||||||||||||||| |||||| ||||||||||||||||| |||||||||| ||| |||||||| ||||| |||||||||||    
T  8841430 agagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaag 8841511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 9122287 - 9122196
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||| |||          ||||||||||||||||| |||||||||||||||||    
T  9122287 agagaaagtgtgcttgtgcgggatccacgtgactacatgtcagatttttgtgtgg----------gtgtattgccacctaagggtgtctatgtatcatta 9122198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 114
Target Start/End: Original strand, 14055613 - 14055692
Alignment:
Q  35 tccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattactc 114  Q
    ||||||||||||| ||| |||||||||| |||||||||| |||||||||| |||||||| ||||| ||||||||| ||||    
T  14055613 tccacgtgactacatgtaagatttttgtgtggatgtcaaggagtgtattgtcacctaagggtgtcaatgtatcataactc 14055692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 20074966 - 20075034
Alignment:
Q  46 acgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattactc 114  Q
    |||||||| |||||| | ||| ||||||||||||||||||||||||||  |||||||||||||||||||    
T  20074966 acgtgtcacatttttatgtgggtgtcaaagagtgtattgccacctaaggatgtctatgtatcattactc 20075034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 15258927 - 15259029
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||| ||||||| ||| || |||||||||| || |||||||||||| | |||||||| | |  |||||||||| |||||||| |||||||||||| |    
T  15258927 agagaaaatgtgcttgtgcagggtccacgtgaccacatgtcagatttttatgtggatgtccagggatgtattgccatctaagagtatctatgtatcataa 15259026  T
Q  112 ctc 114  Q
    |||    
T  15259027 ctc 15259029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 16383479 - 16383377
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||| ||| |||||| ||||  || | || |||||||||||||| ||| |||||| | ||||||||||||||||| |||| |||||||||| |    
T  16383479 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 16383380  T
Q  112 ctc 114  Q
    |||    
T  16383379 ctc 16383377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 32032826 - 32032725
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||| ||| ||| |||||||  || | || |||||||||||||| |||||||||| || |||||||||||||||| |||| |||||||||| |    
T  32032826 agagaaagtgtacttgtgcaggatccatatggccacatgtcagatttttgtgtggatgtcaagga-tgtattgccacctaagggtgtttatgtatcataa 32032728  T
Q  112 ctc 114  Q
    |||    
T  32032727 ctc 32032725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 30479509 - 30479574
Alignment:
Q  49 tgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattactc 114  Q
    |||||||||||| | |||||||||||| ||||||||||||||||| |||| |||||||||| ||||    
T  30479509 tgtcagatttttatgtggatgtcaaagggtgtattgccacctaagggtgtttatgtatcataactc 30479574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 4854861 - 4854963
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| ||| || |||| ||| | || | |||||||||| | | | ||| |||| |||||||||||||||||  ||||||||||||||||    
T  4854861 agagaaagtgtgcttgtgcagggtccatgtggccacatatcagatttttatgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcatta 4854960  T
Q  112 ctc 114  Q
    |||    
T  4854961 ctc 4854963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 34307318 - 34307216
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||| ||| |||||| | ||  || | || |||||||||||||| ||| |||||| | ||||||||||||||||| |||| |||||||||| |    
T  34307318 agagaaagtgtacttgtgcggggttcatatgtccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 34307219  T
Q  112 ctc 114  Q
    |||    
T  34307218 ctc 34307216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 38229530 - 38229429
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||| ||||||| | | | ||||||||||| || |||||||||||||| ||| |||| | ||| ||||||||||||||||||||  ||||||||| |    
T  38229530 agagaaaatgtgcttgtacagaatccacgtgaccacatgtcagatttttgtgtgggtgtc-aggagcgtattgccacctaagagtgttcatgtatcataa 38229432  T
Q  112 ctc 114  Q
    |||    
T  38229431 ctc 38229429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 42221617 - 42221515
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |  ||| ||||  ||| |||||||||||||||||| ||| |||| | || ||||||| ||||||||  ||| ||||||||||||    
T  42221617 agagaaagtgtgcttgtatggggtccatatgattacgtgtcagatttttgtgtgggtgtccaggaatgtattgtcacctaaggatgtatatgtatcatta 42221518  T
Q  112 ctc 114  Q
    |||    
T  42221517 ctc 42221515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 17443927 - 17443825
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    |||||||||||  || || ||| ||||| ||||||| |||||||||||||| ||  ||| ||  ||||||||| ||||||||  |||||||||||||| |    
T  17443927 agagaaagtgtctttgtgtggggtccacatgactacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatgtatcataa 17443828  T
Q  112 ctc 114  Q
    |||    
T  17443827 ctc 17443825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 24307791 - 24307893
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||| ||| |||||| ||||  || | || | |||||||||||| ||| |||||| |  |||||||||||||||| |||| |||||||||| |    
T  24307791 agagaaagtgtacttgtgcggggtccatatggccacatatcagatttttgtgtgggtgtcaagggatgtattgccacctaagggtgtttatgtatcataa 24307890  T
Q  112 ctc 114  Q
    |||    
T  24307891 ctc 24307893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 24307692 - 24307629
Alignment:
Q  51 tcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattactc 114  Q
    |||||||||||| ||| |||||| |  |||||||||||||||| |||| |||||||||| ||||    
T  24307692 tcagatttttgtgtgggtgtcaatggatgtattgccacctaagggtgtttatgtatcataactc 24307629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 30183906 - 30183975
Alignment:
Q  45 tacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattactc 114  Q
    ||||| |||||||||||||||  |||| | || ||||||||||| ||||  ||| |||||||||||||||    
T  30183906 tacgtatcagatttttgtatgagtgtccaggaatgtattgccacgtaaggatgtatatgtatcattactc 30183975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 7389491 - 7389389
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||    
T  7389491 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaagggtgtctatgtatcatta 7389392  T
Q  112 ctc 114  Q
    |||    
T  7389391 ctc 7389389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 40957809 - 40957707
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||    
T  40957809 agagaaagtgtgcttgtacgggatccacgtgactacgtgtcagatttttgtgtgggtatcaaagagtgtattgccacctaagagtgtctatgtatcatta 40957710  T
Q  112 ctc 114  Q
    |||    
T  40957709 ctc 40957707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 3434664 - 3434562
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||| |||||||| |||||||||||||||||  ||||||||||||||||    
T  3434664 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagttttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcatta 3434565  T
Q  112 ctc 114  Q
    |||    
T  3434564 ctc 3434562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 12 - 111
Target Start/End: Complemental strand, 3784097 - 3783998
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||   |||||||||||||||| |||||||||||||||||    
T  3784097 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcatta 3783998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 8080381 - 8080483
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||| | | | |||||||| ||||||||||||||||| |||||||||||||||||    
T  8080381 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 8080480  T
Q  112 ctc 114  Q
    |||    
T  8080481 ctc 8080483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 19436185 - 19436287
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||  |||||||| ||||||||  ||||||||||||||||    
T  19436185 agagaaagtgtgcttatgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaaggatgtctatgtatcatta 19436284  T
Q  112 ctc 114  Q
    |||    
T  19436285 ctc 19436287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 36361911 - 36362013
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| || ||| |||||||||||||||||||||||||||| ||| ||||||||  |||||||||||||||| |||||||||||||||||    
T  36361911 agagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagggtgtctatgtatcatta 36362010  T
Q  112 ctc 114  Q
    |||    
T  36362011 ctc 36362013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 38267142 - 38267040
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||| ||| |||||||| |||||||| ||| |||| |||||||||||||||||    
T  38267142 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacataagggtgtctatgtatcatta 38267043  T
Q  112 ctc 114  Q
    |||    
T  38267042 ctc 38267040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 19329944 - 19329842
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| ||||||||| |||||||||||||||||| ||| |||||||  |||||||||||||||||  ||||||||||||||||    
T  19329944 agagaaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcatta 19329845  T
Q  112 ctc 114  Q
    |||    
T  19329844 ctc 19329842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 35137635 - 35137533
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    |||||||||||| || |||||| ||||||||||||||||| |||||||||| ||| |||||||| ||||||||||||||||| |||||||| ||||||||    
T  35137635 agagaaagtgtgtttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatttatcatta 35137536  T
Q  112 ctc 114  Q
    |||    
T  35137535 ctc 35137533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 36362128 - 36362026
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| || ||| |||||||||||||||||||||||||||| ||| ||||||||  |||||| ||||||||| |||||||||||||||||    
T  36362128 agagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattaccacctaagggtgtctatgtatcatta 36362029  T
Q  112 ctc 114  Q
    |||    
T  36362028 ctc 36362026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 38837319 - 38837217
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||| | | |||  ||| ||||||||||||||||| |||||||||||||||||    
T  38837319 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtaggtgtacaagggtgtattgccacctaagggtgtctatgtatcatta 38837220  T
Q  112 ctc 114  Q
    |||    
T  38837219 ctc 38837217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 32951491 - 32951592
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| ||||||||||||||||| |||||||||| ||||||| ||||  ||||||| || |||||||||||||||||||||||    
T  32951491 agagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtggatgttaaaggatgtattgtcatctaagagtgtctatgtatcatta 32951590  T
Q  112 ct 113  Q
    ||    
T  32951591 ct 32951592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 4999512 - 4999614
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    |||||||||||| || |||||| ||||||||||||||| |||||||||||| ||| |||||||  ||||||||||| ||||| |||||||||||||||||    
T  4999512 agagaaagtgtgtttgtgcggggtccacgtgactacgtatcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcatta 4999611  T
Q  112 ctc 114  Q
    |||    
T  4999612 ctc 4999614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 111
Target Start/End: Complemental strand, 3694469 - 3694370
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||| ||| ||| |||  |||||||| |||||||| |||| ||| ||||||||    
T  3694469 agagaaagtgtgcttgtgcgggatccacatgactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgtcacctaagggtgtgtatatatcatta 3694370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 38044299 - 38044197
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||| ||| |||||| ||||  || |||| |||||||||||||| |||||||||| | ||||||||||||||||| |||| |||||||||| |    
T  38044299 agagaaagtgtacttgtgcggggtccatatggctacatgtcagatttttgtgtggatgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 38044200  T
Q  112 ctc 114  Q
    |||    
T  38044199 ctc 38044197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 8238315 - 8238212
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccaccta-agagtgtctatgtatcatt 110  Q
    ||||||||||| ||| |||||| ||||  ||||||| |||||||||||||| ||| |||||||| ||||||||||||||| || |||| ||||||||||     
T  8238315 agagaaagtgtacttgtgcggggtccatatgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctacagggtgtttatgtatcata 8238216  T
Q  111 actc 114  Q
    ||||    
T  8238215 actc 8238212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 36208275 - 36208173
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||| ||||||| ||| || |||||||||| || |||||| ||||||| ||| |||||| || |||||| ||||||||| ||||||||||||||| |    
T  36208275 agagaaaatgtgcttgtgcagggtccacgtgaccacatgtcagctttttgtgtgggtgtcaatgaatgtattaccacctaagggtgtctatgtatcataa 36208176  T
Q  112 ctc 114  Q
    |||    
T  36208175 ctc 36208173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 35522978 - 35522881
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcat 109  Q
    ||||||||||||||| |||||||||||  || | ||||||||||||||||| ||| ||| |||  |||||||||||| ||||  ||||||||||||||    
T  35522978 agagaaagtgtgcttgtgcgggatccatatggccacgtgtcagatttttgtgtgggtgttaaatggtgtattgccacttaaggatgtctatgtatcat 35522881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 18207281 - 18207180
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| || ||| | |||||| | |||||| |||||||||||||| ||||||   |||||||||||||||||  |||||||||||||| |    
T  18207281 agagaaagtgtgcttgtgtggggttcacgtgcc-acgtgttagatttttgtatgggtgtcaagaggtgtattgccacctaaggttgtctatgtatcataa 18207183  T
Q  112 ctc 114  Q
    |||    
T  18207182 ctc 18207180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 21234503 - 21234401
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||| ||||||| |||||| | || ||| |||||||||| |||||||| ||  |||||||| |||||||| ||||||||  |||||||||||||| |    
T  21234503 agagaaaatgtgcttgtgcggggtacatgtggctacgtgtcaaatttttgtgtgagtgtcaaagggtgtattgtcacctaaggatgtctatgtatcataa 21234404  T
Q  112 ctc 114  Q
    |||    
T  21234403 ctc 21234401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 46374808 - 46374902
Alignment:
Q  20 tgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattactc 114  Q
    ||||||| |||||| |||| ||| | ||||||||||||||||| ||| ||| |||| |||| ||||||||||||  |||||||||||||| ||||    
T  46374808 tgtgcttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagggtgtgttgccacctaaggatgtctatgtatcataactc 46374902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 11044280 - 11044188
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||| ||| |||||| ||||||||||||||||||||          || ||||||||  |||||||||||||||| |||||||||||||||||    
T  11044280 agagaaagtgtacttgtgcggggtccacgtgactacgtgtcag----------gggtgtcaaaggatgtattgccacctaagggtgtctatgtatcatta 11044191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 10343597 - 10343663
Alignment:
Q  48 gtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattactc 114  Q
    ||||||||||||||| ||| ||||||   ||||||| ||||||||| ||||||||||||||||||||    
T  10343597 gtgtcagatttttgtgtgggtgtcaagatgtgtatttccacctaagggtgtctatgtatcattactc 10343663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 22343463 - 22343361
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||| ||| |||||| ||||  ||   || |||||||||||||| ||| |||||| | ||||||||||||||||| |||| |||||||||| |    
T  22343463 agagaaagtgtacttgtgcggggtccatatggtcacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 22343364  T
Q  112 ctc 114  Q
    |||    
T  22343363 ctc 22343361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 39255922 - 39256023
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||| ||| || ||  |||||||| | ||||||||||||||||||||| | ||||   |||||||||||||||||  |||||||||||||| |    
T  39255922 agagaaagtgttcttgtgtggagtccacgtgcc-acgtgtcagatttttgtatgggtatcaagtggtgtattgccacctaaggttgtctatgtatcataa 39256020  T
Q  112 ctc 114  Q
    |||    
T  39256021 ctc 39256023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 40846111 - 40846213
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    |||||||||||  || |||||| ||||  | ||||| ||| |||||||||| |||||||||| | |||||||||||||||||  ||| |||||||||| |    
T  40846111 agagaaagtgtatttgtgcggggtccatataactacatgttagatttttgtgtggatgtcaaggggtgtattgccacctaaggatgtttatgtatcataa 40846210  T
Q  112 ctc 114  Q
    |||    
T  40846211 ctc 40846213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 41915843 - 41915741
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||| ||| |||||| ||||  || | || |||||||||||||| | | |||||| | ||||||||||||||||| |||| |||||||||| |    
T  41915843 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtaggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 41915744  T
Q  112 ctc 114  Q
    |||    
T  41915743 ctc 41915741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 46033827 - 46033901
Alignment:
Q  40 gtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattactc 114  Q
    ||||| ||||||||||||||| | ||| ||| |||| |||||||||||||||||| | |||||||||||| ||||    
T  46033827 gtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaagaatatctatgtatcataactc 46033901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 16374822 - 16374883
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaa 73  Q
    |||||| |||||||| || | |||||||||||| ||||||||||||||||| ||||||||||    
T  16374822 agagaatgtgtgcttgtgtgagatccacgtgaccacgtgtcagatttttgtgtggatgtcaa 16374883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 32564461 - 32564526
Alignment:
Q  49 tgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattactc 114  Q
    |||||||||||||| ||| |||||| | |||||||||||||||||| ||| |||||||||| ||||    
T  32564461 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagaatgtttatgtatcataactc 32564526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 31735979 - 31735884
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| ||||||||||| ||| | ||||||       |||| ||| ||| ||||||||||||||||||||||  |||||||||||||| |    
T  31735979 agagaaagtgtgcttgtgcgggatccatgtggccacgtgt-------ttgtgtgggtgttaaagagtgtattgccacctaaggatgtctatgtatcataa 31735887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 114
Target Start/End: Complemental strand, 12310986 - 12310906
Alignment:
Q  32 ggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattactc 114  Q
    ||||||||||||| || |||||||||||||||||||| ||  ||| | |||| ||||||||| ||||||||||||||| ||||    
T  12310986 ggatccacgtgaccacatgtcagatttttgtatggatatc-caga-tatatttccacctaagggtgtctatgtatcataactc 12310906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 45223111 - 45223042
Alignment:
Q  45 tacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattactc 114  Q
    |||||||||||||||||| | |||||  |||| ||||||||||||||||  ||| ||| |||||||||||    
T  45223111 tacgtgtcagatttttgtgtagatgttcaagaatgtattgccacctaaggatgtatatatatcattactc 45223042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 7728006 - 7727906
Alignment:
Q  14 agaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattact 113  Q
    ||||||||| ||| |||||| ||||  |||| || |||||||||||| | || |||||||   ||||||| ||||||||| |||| |||||||||| |||    
T  7728006 agaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttatgtgaatgtcaagaggtgtattaccacctaagggtgtttatgtatcataact 7727907  T
Q  114 c 114  Q
    |    
T  7727906 c 7727906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 26296746 - 26296644
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||| || |||| |||||| ||||  || | |||| |||||||||| | ||||||| |||| || ||||| ||||||||  |||||||||||||| |    
T  26296746 agagaaaatgcgcttgtgcggggtccatatggccacgtatcagatttttatgtggatgttaaagggtatattgtcacctaaggatgtctatgtatcataa 26296647  T
Q  112 ctc 114  Q
    |||    
T  26296646 ctc 26296644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 27744307 - 27744375
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgt 80  Q
    ||||||| ||||||| || |||||||||||| | || |||||||||||||| ||| | |||||| ||||    
T  27744307 agagaaaatgtgcttatgagggatccacgtggccacatgtcagatttttgtgtgggtatcaaagggtgt 27744375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 5574486 - 5574588
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||| |||||||||||||||||||||||||||||||||||    
T  5574486 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcatta 5574585  T
Q  112 ctc 114  Q
    |||    
T  5574586 ctc 5574588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 17473122 - 17473020
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||| ||||| |||||||||||||||||    
T  17473122 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcatta 17473023  T
Q  112 ctc 114  Q
    |||    
T  17473022 ctc 17473020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 27864806 - 27864704
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||| |||||||||||| |||| |||||||||||||||||    
T  27864806 agagaaagtgtgcttttgcggggtccacgtgattacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacataagggtgtctatgtatcatta 27864707  T
Q  112 ctc 114  Q
    |||    
T  27864706 ctc 27864704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 12 - 111
Target Start/End: Complemental strand, 28863557 - 28863458
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||| |||||||||||||||||    
T  28863557 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 28863458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 9058582 - 9058480
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| ||||| |||||||||||||||||||||| ||| |||||||| ||||||||||||||||| |||||||||||||||||    
T  9058582 agagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 9058483  T
Q  112 ctc 114  Q
    |||    
T  9058482 ctc 9058480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 33436098 - 33436200
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| ||||||||||||||||| |||||||||| ||| |||||||| ||||||||||||||||| |||||||||||||||||    
T  33436098 agagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 33436197  T
Q  112 ctc 114  Q
    |||    
T  33436198 ctc 33436200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 4060785 - 4060685
Alignment:
Q  14 agaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattact 113  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||  |||||||| |||||||| |||||||||||||||||||    
T  4060785 agaaagtgtgcttatgcgggatccacgtaactacgtgtcagatttttgtgtggatgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattact 4060686  T
Q  114 c 114  Q
    |    
T  4060685 c 4060685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 12 - 111
Target Start/End: Original strand, 19930818 - 19930917
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    |||||||||||| || |||||| ||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||    
T  19930818 agagaaagtgtgtttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 19930917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 7465733 - 7465835
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| || ||| |||||||||||||||||||||||||||| ||| |||||||| ||||||||||| ||||| |||||||||||||||||    
T  7465733 agagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcatta 7465832  T
Q  112 ctc 114  Q
    |||    
T  7465833 ctc 7465835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 10249380 - 10249482
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||| ||| |||||||  |||||||| |||||||| |||||||||||||||||    
T  10249380 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcatta 10249479  T
Q  112 ctc 114  Q
    |||    
T  10249480 ctc 10249482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 13438445 - 13438343
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||| ||| ||||||||  ||||||| |||||||| |||||||||||||||||    
T  13438445 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgtcacctaagggtgtctatgtatcatta 13438346  T
Q  112 ctc 114  Q
    |||    
T  13438345 ctc 13438343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 32505648 - 32505748
Alignment:
Q  14 agaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattact 113  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||| ||| |||||||  |||||||| |||||||| |||||||||||||||||||    
T  32505648 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattact 32505747  T
Q  114 c 114  Q
    |    
T  32505748 c 32505748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 30915565 - 30915463
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| | |||| |||||||||||||||||||||||||| | |||  ||||||| ||||||||||||||||| |||||||||||||||||    
T  30915565 agagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttatgtgggggtcaaagggtgtattgccacctaagggtgtctatgtatcatta 30915466  T
Q  112 ctc 114  Q
    |||    
T  30915465 ctc 30915463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 40701580 - 40701478
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    |||||||||||| || |||||| ||||||| |||||||||||||||||||| ||| |||||||  ||||||||||||||||| |||||||||||||||||    
T  40701580 agagaaagtgtgattgtgcggggtccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcatta 40701481  T
Q  112 ctc 114  Q
    |||    
T  40701480 ctc 40701478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 20700917 - 20700815
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||| | |  ||||||| |||||||||||| ||||  ||||||||||||||||    
T  20700917 agagaaagtgtgcttatgcggggtccacgtgactacgtgtcagatttttgtgtaggagtcaaagggtgtattgccacataaggatgtctatgtatcatta 20700818  T
Q  112 ctc 114  Q
    |||    
T  20700817 ctc 20700815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 28381653 - 28381755
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||  |||| ||||||||||||||||||||||| ||| |||| ||  ||||||||||||||||| |||||||||||||||||    
T  28381653 agagaaagtgtgcttgtgcggagtccatgtgactacgtgtcagatttttgtgtgggtgtcgaaaggtgtattgccacctaagggtgtctatgtatcatta 28381752  T
Q  112 ctc 114  Q
    |||    
T  28381753 ctc 28381755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 114
Target Start/End: Original strand, 38882835 - 38882913
Alignment:
Q  35 tccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattactc 114  Q
    |||||||||||||||||||||||||||| |||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  38882835 tccacgtgactacgtgtcagatttttgtgtggatgtcaaagggt-tattgccacctaagggtgtctatgtatcattactc 38882913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 40613900 - 40614002
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| |||| ||| | ||||||||||||||||| ||| |||||||| |||||||||||||||||  |||||||||||||| |    
T  40613900 agagaaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataa 40613999  T
Q  112 ctc 114  Q
    |||    
T  40614000 ctc 40614002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 38273140 - 38273242
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||  |||||| |||| ||| ||||||||||||||||||| ||| ||| |||| ||||||||||| |||||| |||||||||||||| |    
T  38273140 agagaaagtgtgctagtgcggggtccatgtggctacgtgtcagatttttgtgtgggtgttaaagggtgtattgccatctaagaatgtctatgtatcataa 38273239  T
Q  112 ctc 114  Q
    |||    
T  38273240 ctc 38273242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 2533221 - 2533124
Alignment:
Q  16 aaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattactc 114  Q
    ||||||||||| |||||| || | ||| ||||||||||||||||||| ||| ||||||||  ||||||||||| ||||  |||||||||||||| ||||    
T  2533221 aaagtgtgcttgtgcggggtctatgtggctacgtgtcagatttttgtgtgg-tgtcaaaggatgtattgccacttaaggatgtctatgtatcataactc 2533124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 26891502 - 26891604
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||| ||||||| | || | |||||||||| || |||||||||||||| ||| |||| | | ||||||||||||||||| ||| ||||||||||| |    
T  26891502 agagaaaatgtgcttgttcgaggtccacgtgaccacatgtcagatttttgtgtgggtgtctaggggtgtattgccacctaagggtggctatgtatcataa 26891601  T
Q  112 ctc 114  Q
    |||    
T  26891602 ctc 26891604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 42257295 - 42257193
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| |||| ||| | ||||||||||||||| | ||| |||||||   |||||||||||||||   |||||||||||||| |    
T  42257295 agagaaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttatgtgggtgtcaaatgatgtattgccacctaaagatgtctatgtatcataa 42257196  T
Q  112 ctc 114  Q
    |||    
T  42257195 ctc 42257193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 3440081 - 3439985
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatca 108  Q
    ||||||| ||||||| |||||| ||||||| |  || ||| |||||||||| ||| |||| | ||||||||||||||||||| ||||||| ||||||    
T  3440081 agagaaaatgtgcttgtgcggggtccacgtaatcacatgttagatttttgtgtgggtgtccaggagtgtattgccacctaagggtgtctacgtatca 3439985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 41575240 - 41575138
Alignment:
Q  12 agagaaagtgtgcttttgc-gggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatt 110  Q
    ||||||||||||||| ||  ||| ||||| |||| || ||||| |||||||| || ||||||||| ||||||| ||| |||||  |||||||||||||||    
T  41575240 agagaaagtgtgcttgtgtaggggtccacatgaccacatgtcaaatttttgtgtgaatgtcaaagggtgtattaccatctaaggatgtctatgtatcatt 41575141  T
Q  111 act 113  Q
    |||    
T  41575140 act 41575138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 45097733 - 45097835
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||| ||| |||||| ||||  || | || |||||||||||||||||| |||||| |  ||||||||||||||||  ||| |||||||||| |    
T  45097733 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtatgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataa 45097832  T
Q  112 ctc 114  Q
    |||    
T  45097833 ctc 45097835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 33436279 - 33436211
Alignment:
Q  46 acgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattactc 114  Q
    ||||||||||||||| | ||| |||||||  ||||||||||| |||||  |||||||||||||||||||    
T  33436279 acgtgtcagatttttatgtgggtgtcaaaaggtgtattgccatctaaggatgtctatgtatcattactc 33436211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 17820002 - 17820104
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||| |||| || || ||| ||||||| || || |||||||||||||| ||| |||||| | |||||||||||||||    |||||||||||||| |    
T  17820002 agagaaaatgtgtttgtgtggggtccacgtaaccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctatagttgtctatgtatcataa 17820101  T
Q  112 ctc 114  Q
    |||    
T  17820102 ctc 17820104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 38732456 - 38732354
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||| ||| |||||| ||||  |||| || |||||||||||||| ||| |||||| |  ||||||| ||| |||| |||| |||||||||| |    
T  38732456 agagaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagggatgtattgtcacataagggtgtttatgtatcataa 38732357  T
Q  112 ctc 114  Q
    |||    
T  38732356 ctc 38732354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 43490219 - 43490121
Alignment:
Q  16 aaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattactc 114  Q
    ||||||| ||| |||||| ||||  || | || |||||||||||||| ||| |||||| | |||||||| |||||||| |||| |||||||||| ||||    
T  43490219 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgtcacctaagggtgtttatgtatcataactc 43490121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 2997485 - 2997566
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaag 93  Q
    ||||||||||| ||| |||||| ||||  || | || |||||||||||||| ||| |||||| | |||||||||||||||||    
T  2997485 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaag 2997566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 17823853 - 17823784
Alignment:
Q  45 tacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattactc 114  Q
    |||||||||||||||||| ||| |||  | || ||||||||||||||||  ||| |||||||||||||||    
T  17823853 tacgtgtcagatttttgtgtgggtgttcaggaatgtattgccacctaaggatgtatatgtatcattactc 17823784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 36168938 - 36168836
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||| ||||| |||||| |||| ||| | |||||||| |||||||| |||  || ||||  ||||||| || |||||  |||||||||||||| |    
T  36168938 agagaaagtatgcttgtgcggggtccatgtggccacgtgtcaaatttttgtgtgggagttaaaggatgtattgtcatctaaggatgtctatgtatcataa 36168839  T
Q  112 ctc 114  Q
    |||    
T  36168838 ctc 36168836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 14831914 - 14831814
Alignment:
Q  14 agaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattact 113  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  14831914 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattact 14831815  T
Q  114 c 114  Q
    |    
T  14831814 c 14831814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 2740376 - 2740274
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||  ||||||||||||||||    
T  2740376 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcatta 2740277  T
Q  112 ctc 114  Q
    |||    
T  2740276 ctc 2740274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 40145509 - 40145407
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||| |||||||||||||||||    
T  40145509 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaagggtgtattgccacctaagggtgtctatgtatcatta 40145410  T
Q  112 ctc 114  Q
    |||    
T  40145409 ctc 40145407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 12 - 111
Target Start/End: Original strand, 18520882 - 18520981
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||| |||||||||||||||||    
T  18520882 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 18520981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 33149636 - 33149738
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||| ||| |||||||| ||||||| ||||||||| |||||||||||||||||    
T  33149636 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcatta 33149735  T
Q  112 ctc 114  Q
    |||    
T  33149736 ctc 33149738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 35785301 - 35785199
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    |||||||||||| || |||||||||||||| |||||||||||||||||||| ||| |||||||  ||||||||||||||||| |||||||||||||||||    
T  35785301 agagaaagtgtgattgtgcgggatccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcatta 35785202  T
Q  112 ctc 114  Q
    |||    
T  35785201 ctc 35785199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 36732940 - 36733042
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| |||||||||||| ||||||||||||||| ||| |||||||| ||||||||| ||||||| |||||||||||||||||    
T  36732940 agagaaagtgtgcttgtgcggggtccacgtgactatgtgtcagatttttgtgtgggtgtcaaagggtgtattgctacctaagggtgtctatgtatcatta 36733039  T
Q  112 ctc 114  Q
    |||    
T  36733040 ctc 36733042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 13811754 - 13811652
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||| ||| |||||||   |||||||||||||||| ||||||||||||| |||    
T  13811754 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatcttta 13811655  T
Q  112 ctc 114  Q
    |||    
T  13811654 ctc 13811652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 35943890 - 35943992
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| || ||||||||||| |||||||||||||||||||| ||| |||||||   |||||||||||||||| ||||||||||||||| |    
T  35943890 agagaaagtgtgcttgtgtgggatccacgtaactacgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatcataa 35943989  T
Q  112 ctc 114  Q
    |||    
T  35943990 ctc 35943992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 42414304 - 42414402
Alignment:
Q  16 aaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattactc 114  Q
    ||||||||||| |||||| ||||| |||||||||||||||||||||| ||| |||||||| |||||||||||||||   ||||||||||||||||||||    
T  42414304 aaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctactggtgtctatgtatcattactc 42414402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 28177877 - 28177775
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    |||||||||||| || |||||| |||| ||||| ||||||||||||||||| ||| |||||||| |||||||||||||||||  |||||||||||||| |    
T  28177877 agagaaagtgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataa 28177778  T
Q  112 ctc 114  Q
    |||    
T  28177777 ctc 28177775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 31009088 - 31008988
Alignment:
Q  14 agaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattact 113  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||  |||| ||||||| ||||||||  ||| |||||||||| |||    
T  31009088 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtggaagaatgtattgtcacctaaggatgtttatgtatcataact 31008989  T
Q  114 c 114  Q
    |    
T  31008988 c 31008988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 15409608 - 15409710
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||| ||||||||| |||||| |||| ||| ||||||||||||||||||| ||| ||||||||| ||||||| ||||||||  |||||||||||||| |    
T  15409608 agagagagtgtgcttgtgcggggtccatgtggctacgtgtcagatttttgtgtgggtgtcaaagaatgtattgtcacctaaggatgtctatgtatcataa 15409707  T
Q  112 ctc 114  Q
    |||    
T  15409708 ctc 15409710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 26720618 - 26720516
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| ||||||||||| ||| | ||||||||||||||| | | | ||| |||| |||||||||||||||||  |||||||||||||| |    
T  26720618 agagaaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcataa 26720519  T
Q  112 ctc 114  Q
    |||    
T  26720518 ctc 26720516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 26990367 - 26990265
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| ||||||||||| ||| | ||||||||||||||| | | | ||| |||| |||||||||||||||||  |||||||||||||| |    
T  26990367 agagaaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcataa 26990268  T
Q  112 ctc 114  Q
    |||    
T  26990267 ctc 26990265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 36875610 - 36875702
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||||||||||||||||         ||||||| ||| |||||||| ||||||||||||||||| |||||||||||||||||    
T  36875610 agagaaagtgtgcttgtgcgggatccacgtgacta---------tttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 36875700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 114
Target Start/End: Original strand, 41470425 - 41470516
Alignment:
Q  23 gcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattactc 114  Q
    |||| |||||| |||||||||||||||||||||||||| |||| || | ||||  |||||||||||||||  |||||||||||| |||||||    
T  41470425 gcttgtgcggggtccacgtgactacgtgtcagatttttatatgaattttaaaggatgtattgccacctaaaggtgtctatgtattattactc 41470516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 6679800 - 6679698
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||| |||| || |||||| |||| ||||| ||||||||||||||||| ||| |||||||  ||||||||||||||||   |||||||||||||| |    
T  6679800 agagaaaatgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaagatgtctatgtatcataa 6679701  T
Q  112 ctc 114  Q
    |||    
T  6679700 ctc 6679698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 33825356 - 33825424
Alignment:
Q  46 acgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattactc 114  Q
    ||||||||||||||| | ||| |||||| |||||||||||||||||||| |||||||| ||||||||||    
T  33825356 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagaatgtctatgcatcattactc 33825424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 3921263 - 3921365
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||| ||| |||||| ||||  || | || |||||||||||||| ||| |||||| | ||||||||||||||||| |||| |||||||||| |    
T  3921263 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 3921362  T
Q  112 ctc 114  Q
    |||    
T  3921363 ctc 3921365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 2252166 - 2252268
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||| ||| |||||| ||||  || | || |||||||||||||| ||| |||||| | |||||||||||||||||  ||| |||||||||| |    
T  2252166 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaaggatgtttatgtatcataa 2252265  T
Q  112 ctc 114  Q
    |||    
T  2252266 ctc 2252268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 38296304 - 38296203
Alignment:
Q  13 gagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattac 112  Q
    |||||||||||||| ||  ||||||||||  ||||||||| ||||||||| ||| | | ||   |||||||| |||||||||  ||||||||||||| ||    
T  38296304 gagaaagtgtgcttgtgttggatccacgtagctacgtgtctgatttttgtgtgggtattaagaggtgtattgacacctaagatagtctatgtatcataac 38296205  T
Q  113 tc 114  Q
    ||    
T  38296204 tc 38296203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 31132442 - 31132390
Alignment:
Q  16 aaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggat 68  Q
    ||||| ||||| |||||| ||||||||||||| |||||||||||||| |||||    
T  31132442 aaagtatgcttgtgcggggtccacgtgactacttgtcagatttttgtgtggat 31132390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 6259999 - 6260101
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| || | | |||| ||||| | |||| |||||||||  ||| ||| |||| |||||||| |||||| |  ||| ||||||||||||    
T  6259999 agagaaagtgtgcttctgtgaggtccatgtgaccatgtgttagatttttgcgtgggtgttaaagggtgtattgtcacctatggttgtgtatgtatcatta 6260098  T
Q  112 ctc 114  Q
    |||    
T  6260099 ctc 6260101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 39688895 - 39688997
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||| ||| |||||| | ||  |||| || | |||||||||||| ||| |||||| |  ||||||||||| |||| |||| |||||||||| |    
T  39688895 agagaaagtgtacttatgcggggttcatatgaccacatatcagatttttgtgtgggtgtcaagggatgtattgccacttaagggtgtttatgtatcataa 39688994  T
Q  112 ctc 114  Q
    |||    
T  39688995 ctc 39688997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 6034146 - 6034044
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||| ||| |||||||| ||||||||||||||||| |||||||||||||||||    
T  6034146 agagaaagtgtgcttgtgcgggatccacgtgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 6034047  T
Q  112 ctc 114  Q
    |||    
T  6034046 ctc 6034044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 41236449 - 41236347
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||| |||||||||||||||||    
T  41236449 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaaaggtgtattgccacctaagggtgtctatgtatcatta 41236350  T
Q  112 ctc 114  Q
    |||    
T  41236349 ctc 41236347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 11511460 - 11511562
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||| | ||| |||||||| ||||||||||||||||| |||||||||||||||||    
T  11511460 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 11511559  T
Q  112 ctc 114  Q
    |||    
T  11511560 ctc 11511562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 48183047 - 48183149
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||| ||| |||||||| |||||||||||| |||| |||||||||||||||||    
T  48183047 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacgtaagggtgtctatgtatcatta 48183146  T
Q  112 ctc 114  Q
    |||    
T  48183147 ctc 48183149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 50052426 - 50052528
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||  ||||||||||||||||    
T  50052426 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcatta 50052525  T
Q  112 ctc 114  Q
    |||    
T  50052526 ctc 50052528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 480445 - 480547
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| | |||| |||||||||||||||||||||||||||| ||| |||||||| |||||||| |||||||| |||||||||||||||||    
T  480445 agagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcatta 480544  T
Q  112 ctc 114  Q
    |||    
T  480545 ctc 480547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 3481756 - 3481654
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| || ||| |||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||  |||||||||||||||||    
T  3481756 agagaaagtgtgcttgtgtggggtccacgtgactatgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaaggtgtctatgtatcatta 3481657  T
Q  112 ctc 114  Q
    |||    
T  3481656 ctc 3481654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 29239988 - 29239886
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| || ||| ||||||||||||||||| |||||||||| |||||||||||  ||||||||||||||||| |||||||||||||||||    
T  29239988 agagaaagtgtgcttgtgtggggtccacgtgactacgtgttagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcatta 29239889  T
Q  112 ctc 114  Q
    |||    
T  29239888 ctc 29239886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 42044365 - 42044467
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||| ||| |||  |||  |||||||||||||||| |||||||||||||||||    
T  42044365 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtacaaggatgtattgccacctaagggtgtctatgtatcatta 42044464  T
Q  112 ctc 114  Q
    |||    
T  42044465 ctc 42044467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 29234243 - 29234345
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||   | | |||||| ||||||||||| ||||| |||||||||||||||||    
T  29234243 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgaaggtatcaaagggtgtattgccatctaagggtgtctatgtatcatta 29234342  T
Q  112 ctc 114  Q
    |||    
T  29234343 ctc 29234345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 54473535 - 54473633
Alignment:
Q  16 aaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattactc 114  Q
    ||||||||||| |||||| ||||||||||||||||| |||||||||| ||| |||||||  |||||||| |||||||| ||||||||||||||||||||    
T  54473535 aaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaatggtgtattgtcacctaagggtgtctatgtatcattactc 54473633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 50526171 - 50526271
Alignment:
Q  14 agaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattact 113  Q
    |||||| |||||| ||||| ||||||||||| ||||||||||||||||| ||| |||||||| ||||||||||||||||   ||||||||||||||||||    
T  50526171 agaaagcgtgcttgtgcggaatccacgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattact 50526270  T
Q  114 c 114  Q
    |    
T  50526271 c 50526271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 31910294 - 31910192
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| |||| ||| ||| ||||||||||||||| ||| ||||||||||||||||| ||||||||  |||||||||||||| |    
T  31910294 agagaaagtgtgcttgtgcggggtccatgtggctatgtgtcagatttttgtgtgggtgtcaaagagtgtattgtcacctaaggatgtctatgtatcataa 31910195  T
Q  112 ctc 114  Q
    |||    
T  31910194 ctc 31910192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 24995105 - 24995207
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||| ||||||| |||||| ||||||||||||||||||| |||||| | ||| |||||||| ||||||||||| ||||| ||||| || ||||||||    
T  24995105 agagaaaatgtgcttgtgcggggtccacgtgactacgtgtcaaatttttatgtgggtgtcaaagggtgtattgccatctaagggtgtccatatatcatta 24995204  T
Q  112 ctc 114  Q
    |||    
T  24995205 ctc 24995207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 23608337 - 23608235
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| || ||  | |||||||||||||||||||||||||| ||| |||||||  |||||||| || ||||| |||||||| ||||||||    
T  23608337 agagaaagtgtgcttgtgtggagttcacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgtcatctaagggtgtctatatatcatta 23608238  T
Q  112 ctc 114  Q
    |||    
T  23608237 ctc 23608235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 32767060 - 32766958
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||| ||| ||| || ||||  || | || |||||||||||||||||| |||||| | |||||||||||||||||||||| |||||||||| |    
T  32767060 agagaaagtgtacttgtgcagggtccatatggccacatgtcagatttttgtatgggtgtcaaggggtgtattgccacctaagagtgtttatgtatcataa 32766961  T
Q  112 ctc 114  Q
    |||    
T  32766960 ctc 32766958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 40574881 - 40574779
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| | ||||||||| ||  |  |||||||||||||||| ||| |||||||| ||||||| |||||||||  |||||||||||||| |    
T  40574881 agagaaagtgtgcttgttcgggatccatgtagcagcgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcataa 40574782  T
Q  112 ctc 114  Q
    |||    
T  40574781 ctc 40574779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 53352564 - 53352660
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcat 109  Q
    ||||||||| ||||| |||||| ||||| | |||||||||||||||||||| | | ||| ||||| ||||||| |||||||| |||||||||||||||    
T  53352564 agagaaagtatgcttgtgcggggtccacttaactacgtgtcagatttttgtgtaggtgttaaagaatgtattg-cacctaagggtgtctatgtatcat 53352660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 29977987 - 29977885
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| || ||| ||||  |||||||||||||||||||||| ||| ||| || | ||||||||||||||| |  | | ||||||||||||    
T  29977987 agagaaagtgtgcttgtgtggggtccatatgactacgtgtcagatttttgtgtgggtgttaaggggtgtattgccacctatggttctgtatgtatcatta 29977888  T
Q  112 ctc 114  Q
    |||    
T  29977887 ctc 29977885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 47986310 - 47986208
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||| ||| |||||| ||||  || | || |||||||||||||| |||||||||| |  |||||||||||||||| |||| |||||||||| |    
T  47986310 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtggatgtcaagggatgtattgccacctaagggtgtttatgtatcataa 47986211  T
Q  112 ctc 114  Q
    |||    
T  47986210 ctc 47986208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 50813890 - 50813992
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||| ||| |||||| | ||  |||| || |||||||||||||| ||| |||||| | ||||||| |||||||||||||| |||||||||| |    
T  50813890 agagaaagtgtacttgtgcggggttcatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgtattaccacctaagagtgtttatgtatcataa 50813989  T
Q  112 ctc 114  Q
    |||    
T  50813990 ctc 50813992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 41823984 - 41823921
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaag 75  Q
    ||||||||||||||| |||||| |||| ||||||||||||||||||||||| ||| ||| ||||    
T  41823984 agagaaagtgtgcttgtgcggggtccatgtgactacgtgtcagatttttgtgtgggtgttaaag 41823921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 19670714 - 19670816
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||| ||| |||||| ||||  || | || |||||||||||||| ||  |||||| | ||||||||||||||||| |||| |||||||||| |    
T  19670714 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 19670813  T
Q  112 ctc 114  Q
    |||    
T  19670814 ctc 19670816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 44536744 - 44536845
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||| ||| || ||| || |  |||| || |||||||||||||| |||||||||| | |||||||||||||||| ||||| |||||||||| |    
T  44536744 agagaaagtgtacttatgtggggtctatatgaccacatgtcagatttttgtgtggatgtcaagg-gtgtattgccacctaaaagtgtttatgtatcataa 44536842  T
Q  112 ctc 114  Q
    |||    
T  44536843 ctc 44536845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 55475293 - 55475191
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||| ||| ||| || ||||  || | || |||||||||||||| ||| |||||||| |||||||||||||||||  ||| |||||||||| |    
T  55475293 agagaaagtgtacttatgcagggtccatatggccacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtttatgtatcataa 55475194  T
Q  112 ctc 114  Q
    |||    
T  55475193 ctc 55475191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 55079749 - 55079814
Alignment:
Q  49 tgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattactc 114  Q
    |||||||||||||||||| ||||||   ||||||||||||||||| |||| |||||||||| ||||    
T  55079749 tgtcagatttttgtatgggtgtcaagaggtgtattgccacctaagggtgtttatgtatcataactc 55079814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 47104612 - 47104544
Alignment:
Q  46 acgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattactc 114  Q
    |||||||| |||||||| ||| ||||| ||||||||||| || |||||| ||||||| |||||||||||    
T  47104612 acgtgtcaaatttttgtgtgggtgtcagagagtgtattgtcatctaagaatgtctatatatcattactc 47104544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 29547961 - 29548059
Alignment:
Q  16 aaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattactc 114  Q
    ||||||| ||| |||||||||||  || | || |||||||||||||| ||| |||||| |  ||||||||||||||||  ||| |||||||||| ||||    
T  29547961 aaagtgtacttatgcgggatccatatggccacatgtcagatttttgtgtgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataactc 29548059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 17983741 - 17983822
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaag 93  Q
    ||||||||||| ||| |||||| ||||  || | || |||||||||||||| ||| |||||| | |||||||||||||||||    
T  17983741 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaag 17983822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 28480267 - 28480360
Alignment:
Q  13 gagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtat 106  Q
    ||||||||||| || || ||| ||||| ||||||| |||||||||||||| ||  ||| ||  ||||||||| ||||||||  |||||||||||    
T  28480267 gagaaagtgtgtttgtgtggggtccacatgactacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatgtat 28480360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 28481142 - 28481235
Alignment:
Q  13 gagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtat 106  Q
    ||||||||||| || || ||| ||||| ||||||| |||||||||||||| ||  ||| ||  ||||||||| ||||||||  |||||||||||    
T  28481142 gagaaagtgtgtttgtgtggggtccacatgactacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatgtat 28481235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 28482017 - 28482110
Alignment:
Q  13 gagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtat 106  Q
    ||||||||||| || || ||| ||||| ||||||| |||||||||||||| ||  ||| ||  ||||||||| ||||||||  |||||||||||    
T  28482017 gagaaagtgtgtttgtgtggggtccacatgactacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatgtat 28482110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 18924530 - 18924595
Alignment:
Q  49 tgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattactc 114  Q
    |||||||||||||| ||||| |||| | ||||||||||||||||| || | |||| ||||| ||||    
T  18924530 tgtcagatttttgtgtggatatcaaggggtgtattgccacctaagggtatttatggatcataactc 18924595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 49607516 - 49607414
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||| |||||||||||||||||    
T  49607516 agagaaagtgtgcttgtgtgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 49607417  T
Q  112 ctc 114  Q
    |||    
T  49607416 ctc 49607414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 53982113 - 53982011
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||| |||||||||||||||||    
T  53982113 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 53982014  T
Q  112 ctc 114  Q
    |||    
T  53982013 ctc 53982011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 33644302 - 33644200
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||| ||| |||||||||||||||||    
T  33644302 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacccaagggtgtctatgtatcatta 33644203  T
Q  112 ctc 114  Q
    |||    
T  33644202 ctc 33644200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 52629402 - 52629305
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcat 109  Q
    ||||||||||||||| | |||| |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||| |||||||||||||||    
T  52629402 agagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 52629305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 8076495 - 8076393
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| ||||||||||||||||| |||||||||| ||| |||||||| ||||| ||||||||||| |||| ||||||||||||    
T  8076495 agagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaagggtgtttatgtatcatta 8076396  T
Q  112 ctc 114  Q
    |||    
T  8076395 ctc 8076393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 27714889 - 27714991
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| ||||| |||||||||||||||||||||| ||| |||||||| ||||||| ||||||||  |||||||||||||||||    
T  27714889 agagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaaggtgtctatgtatcatta 27714988  T
Q  112 ctc 114  Q
    |||    
T  27714989 ctc 27714991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 54868893 - 54868995
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    |||||||||||| || |||||| ||||||| |||||||||||||||||||| ||| |||||||  ||||||||||||||||| |||||||||||||||||    
T  54868893 agagaaagtgtgattgtgcggggtccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcatta 54868992  T
Q  112 ctc 114  Q
    |||    
T  54868993 ctc 54868995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 31456791 - 31456690
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| ||||| |||||||||||||||||||||| ||| |||||||| |||||||||| |||| | |||||||||||||||||    
T  31456791 agagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccgcctatgggtgtctatgtatcatta 31456692  T
Q  112 ct 113  Q
    ||    
T  31456691 ct 31456690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 11095353 - 11095453
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    |||||||||||| || |||||| |  ||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||| |||||||||||||||||    
T  11095353 agagaaagtgtgtttatgcggggt--acgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 11095450  T
Q  112 ctc 114  Q
    |||    
T  11095451 ctc 11095453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 17470507 - 17470405
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| || ||| |||||||||||||||||||||||||||| ||| ||| |||  ||||||||||||||||  |||||||||||||||||    
T  17470507 agagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccacctaaaggtgtctatgtatcatta 17470408  T
Q  112 ctc 114  Q
    |||    
T  17470407 ctc 17470405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 33118849 - 33118951
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    |||||||||||| || || ||||||||||||||||||||||| |||||||| ||| |||||||| |||||||| |||||||| ||||||||||||||| |    
T  33118849 agagaaagtgtgtttctgagggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcataa 33118948  T
Q  112 ctc 114  Q
    |||    
T  33118949 ctc 33118951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 48587089 - 48587187
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatt 110  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||| | | | |||||||| ||||||||||||||||| || |||||||||||||    
T  48587089 agagaaagtgtacttgtgcgggatccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtatctatgtatcatt 48587187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 36707439 - 36707524
Alignment:
Q  29 gcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattactc 114  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||| |||||||| |||||||| || |||||||||||||||||    
T  36707439 gcgggatccacgtaactacgtgtcagatttttgtgtggatgtcaaagggtgtattgtcacctaagggtatctatgtatcattactc 36707524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 9563101 - 9562999
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    |||||||||||| || ||| ||||||||||||||||||||||||||||| ||||||||||||||  ||||||| || ||||  |||| ||||||||||||    
T  9563101 agagaaagtgtgtttgtgcaggatccacgtgactacgtgtcagatttttatatggatgtcaaaggttgtattgtcatctaatggtgtttatgtatcatta 9563002  T
Q  112 ctc 114  Q
    |||    
T  9563001 ctc 9562999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 26141530 - 26141632
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| || ||| |||| ||||| ||||||||||||||||| ||| ||| |||| |||||||||||||||||  |||||||||||||| |    
T  26141530 agagaaagtgtgcttgtgtggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataa 26141629  T
Q  112 ctc 114  Q
    |||    
T  26141630 ctc 26141632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 26754797 - 26754700
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcat 109  Q
    ||||||| ||||||| |||||| |||| ||||| || |||||||||||||| |||||||| ||| ||||||||||||||||| ||||||||| |||||    
T  26754797 agagaaaatgtgcttgtgcggggtccatgtgaccacatgtcagatttttgtgtggatgtccaagggtgtattgccacctaagggtgtctatgaatcat 26754700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 11347920 - 11348022
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| ||| || |||| ||| | ||||||||||||||||| ||||||||||||  ||||||| ||||||||  |||||||||||||| |    
T  11347920 agagaaagtgtgcttatgcagggtccatgtggccacgtgtcagatttttgtgtggatgtcaaaggatgtattgtcacctaaggatgtctatgtatcataa 11348019  T
Q  112 ctc 114  Q
    |||    
T  11348020 ctc 11348022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 20764913 - 20765015
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| | |||| |||| ||| | ||||||||||||||||| ||| ||| |||||||||||| |||||||||  ||||||||| |||| |    
T  20764913 agagaaagtgtgcttgtacggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaaggatgtctatgtctcataa 20765012  T
Q  112 ctc 114  Q
    |||    
T  20765013 ctc 20765015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 14623837 - 14623939
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| || | | ||||| |||  || |||||||||||| | ||| |||||| | |||||||||||||||||  ||||||||||||||||    
T  14623837 agagaaagtgtgcttgtgtgaggtccacatgaacacatgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatgtatcatta 14623936  T
Q  112 ctc 114  Q
    |||    
T  14623937 ctc 14623939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 24699952 - 24700054
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    |||||||||||| || | | || |||||||| | ||||| ||||||||| | ||| |||||||  ||||||||||| |||||  ||||||||||||||||    
T  24699952 agagaaagtgtgtttgtacagggtccacgtggccacgtgccagatttttatgtgggtgtcaaaaggtgtattgccaactaaggatgtctatgtatcatta 24700051  T
Q  112 ctc 114  Q
    |||    
T  24700052 ctc 24700054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 30801731 - 30801829
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatt 110  Q
    ||||||| ||||||| || ||| ||||  ||||||| ||||| |||||||| ||| | |||||| |||||||  |||||||| ||||||||||||||||    
T  30801731 agagaaaatgtgcttgtgtggggtccatatgactacatgtcatatttttgtgtgggtatcaaagggtgtattatcacctaagggtgtctatgtatcatt 30801829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 41189762 - 41189864
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| |||| ||| | |||||||| |||||| | ||| |||||||   ||||||||||||||||  ||| |||||||||| |    
T  41189762 agagaaagtgtgcttgtgcggggtccatgtggccacgtgtcaaatttttatgtgggtgtcaaatgatgtattgccacctaaggatgtatatgtatcataa 41189861  T
Q  112 ctc 114  Q
    |||    
T  41189862 ctc 41189864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 47531967 - 47531865
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| | ||  || | |||||||||||| |||| ||||||| |||  ||||||||||| |||||  |||||||||||||| |    
T  47531967 agagaaagtgtgcttgtgcggggttcatatggccacgtgtcagattcttgtgtggatgttaaaaggtgtattgccatctaaggatgtctatgtatcataa 47531868  T
Q  112 ctc 114  Q
    |||    
T  47531867 ctc 47531865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 48375704 - 48375806
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||| ||||||| |||||| |||| ||||| ||  ||||||||||||||||||| |  | | |||||||| |||||||| ||||||||| ||||| |    
T  48375704 agagaaaatgtgcttgtgcggggtccatgtgaccacacgtcagatttttgtatggattttcaggggtgtattgtcacctaagggtgtctatgaatcataa 48375803  T
Q  112 ctc 114  Q
    |||    
T  48375804 ctc 48375806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 51419358 - 51419460
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| || | ||| | ||||||||||||||||| ||| ||| ||||  ||||||| || |||||  |||||||||||||| |    
T  51419358 agagaaagtgtgcttgtgcggggtctatgtggccacgtgtcagatttttgtgtgggtgttaaaggatgtattgtcatctaaggatgtctatgtatcataa 51419457  T
Q  112 ctc 114  Q
    |||    
T  51419458 ctc 51419460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 13898053 - 13898154
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| || | | ||||| |||  ||||||||||||||| | ||| |||||| | |||||||||||||||||  ||| ||| ||||||||    
T  13898053 agagaaagtgtgcttgtgtgaggtccacatgaacacgtgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtttatctatcatta 13898152  T
Q  112 ct 113  Q
    ||    
T  13898153 ct 13898154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 114
Target Start/End: Complemental strand, 35536705 - 35536626
Alignment:
Q  35 tccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattactc 114  Q
    ||||| |||| |||||||| |||||| | ||| |||||||  |||||||||||| ||||  |||||||||||||||||||    
T  35536705 tccacatgaccacgtgtcacatttttatgtgggtgtcaaatggtgtattgccacataaggatgtctatgtatcattactc 35536626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 11907473 - 11907371
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||| ||||||| |||||| ||||  |||| || |||||||||||||| ||  |||  | | |||||||| |||||||| ||||||||||||||| |    
T  11907473 agagaaaatgtgcttgtgcggggtccatatgaccacatgtcagatttttgtgtgagtgttcaggtgtgtattgtcacctaagggtgtctatgtatcataa 11907374  T
Q  112 ctc 114  Q
    |||    
T  11907373 ctc 11907371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 8956830 - 8956762
Alignment:
Q  46 acgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattactc 114  Q
    |||||||| |||||| | ||| ||||||||  ||||||||||| ||||  |||||||||||||||||||    
T  8956830 acgtgtcacatttttatgtgggtgtcaaaggatgtattgccacataaggatgtctatgtatcattactc 8956762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 43745827 - 43745767
Alignment:
Q  33 gatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaag 93  Q
    |||||||||||  |||||||| ||||||   ||||||||||||||||||||||||| ||||    
T  43745827 gatccacgtgatgacgtgtcaaatttttacgtggatgtcaaagagtgtattgccacttaag 43745767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 32605956 - 32606003
Alignment:
Q  56 tttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatg 103  Q
    ||||||| || |||||||||| ||||||||||||||||| ||||||||    
T  32605956 tttttgtgtgaatgtcaaagaatgtattgccacctaagattgtctatg 32606003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 36331416 - 36331478
Alignment:
Q  52 cagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattactc 114  Q
    ||||||||||| |||||||||| | ||| ||||||| ||||| |||| |||||||||| ||||    
T  36331416 cagatttttgtgtggatgtcaaggggtgcattgccatctaagggtgtttatgtatcataactc 36331478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 45058588 - 45058652
Alignment:
Q  49 tgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattactc 114  Q
    |||||||||||| | ||| |||||| | ||||||||||||||||| |||| |||||||||| ||||    
T  45058588 tgtcagatttttatgtgggtgtcaagg-gtgtattgccacctaagggtgtttatgtatcataactc 45058652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 21746212 - 21746283
Alignment:
Q  45 tacgtgtcagatttttgtatgga--tgtcaaagagtgtattgccacctaagagtgtctatgtatcattactc 114  Q
    |||||||||||||||||| |||   |||| | || ||||||||||||||||  ||| |||||||||||||||    
T  21746212 tacgtgtcagatttttgtgtgggggtgtccaggaatgtattgccacctaaggatgtatatgtatcattactc 21746283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 36331327 - 36331407
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaa 92  Q
    ||||||||||| ||| |||||| ||||  || | || |||||||||||||| ||| |||||| | ||| ||||||||||||    
T  36331327 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgcattgccacctaa 36331407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 9e-36; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 2582015 - 2581915
Alignment:
Q  14 agaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattact 113  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||| |||||||||||||||||||    
T  2582015 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattact 2581916  T
Q  114 c 114  Q
    |    
T  2581915 c 2581915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 9474874 - 9474976
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    |||||||||||| || |||||| |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||| |||||||||||||||||    
T  9474874 agagaaagtgtgtttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 9474973  T
Q  112 ctc 114  Q
    |||    
T  9474974 ctc 9474976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 47452318 - 47452420
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||| ||| |||||||| ||||||| ||||||||| |||||||||||||||||    
T  47452318 agagaaagtgtgcttgtgcgggatccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcatta 47452417  T
Q  112 ctc 114  Q
    |||    
T  47452418 ctc 47452420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 48716284 - 48716382
Alignment:
Q  16 aaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattactc 114  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||| ||||||||||||||||||||    
T  48716284 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcattactc 48716382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 51898683 - 51898783
Alignment:
Q  14 agaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattact 113  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||   ||||||||||||||||||    
T  51898683 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattact 51898782  T
Q  114 c 114  Q
    |    
T  51898783 c 51898783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 3000421 - 3000319
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| | |||| |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||| |||| ||||||||||||    
T  3000421 agagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtttatgtatcatta 3000322  T
Q  112 ctc 114  Q
    |||    
T  3000321 ctc 3000319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 38632323 - 38632421
Alignment:
Q  16 aaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattactc 114  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||| ||||||| |||  ||||||||||||||||| ||||||||||||||||||||    
T  38632323 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaaaggtgtattgccacctaagggtgtctatgtatcattactc 38632421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 27564733 - 27564835
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| ||||||||| |||||||||||||||||| ||| |||||||  |||||||||||||||||  ||||||||||||||||    
T  27564733 agagaaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcatta 27564832  T
Q  112 ctc 114  Q
    |||    
T  27564833 ctc 27564835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 38595256 - 38595154
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| | |||| |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||  |||| ||||||||||||    
T  38595256 agagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaaggtgtttatgtatcatta 38595157  T
Q  112 ctc 114  Q
    |||    
T  38595156 ctc 38595154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 15 - 114
Target Start/End: Complemental strand, 37649297 - 37649198
Alignment:
Q  15 gaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattactc 114  Q
    |||||||||||| ||||| || |||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||   |||||||||||||||||||    
T  37649297 gaaagtgtgcttgtgcggaattcacgtgaccacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaagatgtctatgtatcattactc 37649198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 43234 - 43132
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||  |||||||||||||||||||||||||||| ||| ||||||||  ||||||| | ||||||| ||||||||||||||||    
T  43234 agagaaagtgtgcttgtgcggagtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgtctcctaagactgtctatgtatcatta 43135  T
Q  112 ctc 114  Q
    |||    
T  43134 ctc 43132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 8346386 - 8346488
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| ||| || |||||||||||||||||||||||||||| ||| |||||||  ||||||||||||||||  ||| |||||||||||||    
T  8346386 agagaaagtgtgcttgtgcagggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaaggtgactatgtatcatta 8346485  T
Q  112 ctc 114  Q
    |||    
T  8346486 ctc 8346488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 50630560 - 50630458
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||| ||| |  |||||  |||||||||||||||| || ||||||||||||||    
T  50630560 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtaacaaaggatgtattgccacctaagggtatctatgtatcatta 50630461  T
Q  112 ctc 114  Q
    |||    
T  50630460 ctc 50630458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 111
Target Start/End: Original strand, 44548374 - 44548473
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||| ||| | |||||  ||||||||||||||||   ||||||||||||||||    
T  44548374 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtatcaaatggtgtattgccacctaaagatgtctatgtatcatta 44548473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 32813349 - 32813247
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| |||| ||||| ||||||||||||||||| ||| ||| |||| |||||||||||||||||  |||||||||||||| |    
T  32813349 agagaaagtgtgcttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataa 32813250  T
Q  112 ctc 114  Q
    |||    
T  32813249 ctc 32813247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 41758907 - 41758805
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    |||||||||||| || |||||| |||| ||||||||||||||||||||||| ||| |||||||| |||||||||||  |||  |||||||||||||||||    
T  41758907 agagaaagtgtgtttgtgcggggtccatgtgactacgtgtcagatttttgtgtggttgtcaaagggtgtattgccatttaatggtgtctatgtatcatta 41758808  T
Q  112 ctc 114  Q
    |||    
T  41758807 ctc 41758805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 11152378 - 11152476
Alignment:
Q  14 agaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattact 113  Q
    |||||| |||||| |||||| || || |||||||||||||||||||||| |||||||| ||| ||||||||||||||||| |||||||||| ||||||||    
T  11152378 agaaagcgtgcttgtgcggggtctacatgactacgtgtcagatttttgtgtggatgtcgaagggtgtattgccacctaag-gtgtctatgtttcattact 11152476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 26274530 - 26274435
Alignment:
Q  16 aaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||| ||| ||| ||||||||||||||| ||||||||||||| | |||||||||||   ||||||||||| |||| |||||||||||||||||    
T  26274530 aaagtgtacttgtgcaggatccacgtgactatgtgtcagatttttctgtggatgtcaaatgatgtattgccacataagggtgtctatgtatcatta 26274435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 26440836 - 26440741
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatc 107  Q
    ||||||||||||||| ||||||||||| ||| | ||||||||||||||||| ||| ||| |||| |||||||| || |||||  ||||||| ||||    
T  26440836 agagaaagtgtgcttatgcgggatccatgtggccacgtgtcagatttttgtgtgggtgttaaagggtgtattgtcatctaaggatgtctatctatc 26440741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 49811525 - 49811627
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||  || |  || ||||||||||||||||||| |||||||||||  |||||||| ||||||||  ||||||| |||||| |    
T  49811525 agagaaagtgtgcttgtgcggagtctatatggctacgtgtcagatttttgtgtggatgtcaaatggtgtattgtcacctaaggatgtctatctatcataa 49811624  T
Q  112 ctc 114  Q
    |||    
T  49811625 ctc 49811627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 50590998 - 50591100
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||| ||| |||||| ||||  || | || |||||||||||||| ||| |||||| | ||||||||||||||||| |||| |||||||||| |    
T  50590998 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 50591097  T
Q  112 ctc 114  Q
    |||    
T  50591098 ctc 50591100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 45044558 - 45044639
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaag 93  Q
    ||||||| |||| || |||||| |||| ||| |||| |||||||||||||||||| |||||||  |||||||||||||||||    
T  45044558 agagaaaatgtgtttgtgcggggtccatgtggctacatgtcagatttttgtatgggtgtcaaatggtgtattgccacctaag 45044639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 13414863 - 13414791
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattg 84  Q
    ||||||| ||||||| || ||| ||||||||||||||||| |||||||||| ||| |||||||| ||||||||    
T  13414863 agagaaaatgtgcttgtgtggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattg 13414791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 23597123 - 23597191
Alignment:
Q  46 acgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattactc 114  Q
    ||||||||||||||| | ||| | |||||||||||||||||||||||   |||||||||||||||||||    
T  23597123 acgtgtcagatttttatgtgggtatcaaagagtgtattgccacctaatgatgtctatgtatcattactc 23597191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 5958998 - 5959100
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||| ||| |||||| ||||  |||| || |||||||||||||| ||| ||||||   |||||||||||| |||| |||| |||||||||| |    
T  5958998 agagaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagaggtgtattgccacttaagggtgtttatgtatcataa 5959097  T
Q  112 ctc 114  Q
    |||    
T  5959098 ctc 5959100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 48489400 - 48489343
Alignment:
Q  14 agaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtc 71  Q
    ||||| ||||||| ||||||||||||||||| || |||||||||||||| ||||||||    
T  48489400 agaaaatgtgcttgtgcgggatccacgtgaccacatgtcagatttttgtgtggatgtc 48489343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 44454077 - 44453984
Alignment:
Q  16 aaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaa-agagtgtattgccacctaagagtgtctatgtatcat 109  Q
    ||||||||||| || ||||||||||| || || |||||||||||||| ||| | |||| ||| ||||||||||| |||  |||||||||||||||    
T  44454077 aaagtgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtgtgggtatcaagaga-tgtattgccacttaaaggtgtctatgtatcat 44453984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 47748544 - 47748443
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||| | ||| |||||||||||  || | || |||||||||||| ||||| |||||| | ||||||||||||||||| || | |||||||||| |    
T  47748544 agagaaagtatacttgtgcgggatccatatggccacatgtcagatttttatatgggtgtcaagg-gtgtattgccacctaagggtatttatgtatcataa 47748446  T
Q  112 ctc 114  Q
    |||    
T  47748445 ctc 47748443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 3302533 - 3302633
Alignment:
Q  14 agaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattact 113  Q
    ||||||||||||| |  ||| ||||  ||| |||||||||||||||||| ||| |||| | || | ||||| ||||||||  ||| ||||||||||||||    
T  3302533 agaaagtgtgcttgtatggggtccatatgattacgtgtcagatttttgtgtgggtgtccaggaatatattgtcacctaaggatgtatatgtatcattact 3302632  T
Q  114 c 114  Q
    |    
T  3302633 c 3302633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 44334191 - 44334250
Alignment:
Q  35 tccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaaga 94  Q
    |||| ||||||||||||||| ||||||| |||||||||| | ||||||| ||||| ||||    
T  44334191 tccatgtgactacgtgtcaggtttttgtgtggatgtcaatgtgtgtattaccaccaaaga 44334250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 37926436 - 37926538
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||| ||| | ||||||||| ||| | ||||||||||||||| | ||| ||| |||   |||||||||||||||   | |||||||||||| |    
T  37926436 agagaaagtgtacttgtacgggatccatgtggccacgtgtcagatttttatgtgggtgttaaaagatgtattgccacctaaagatatctatgtatcataa 37926535  T
Q  112 ctc 114  Q
    |||    
T  37926536 ctc 37926538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 41608491 - 41608593
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||| ||| | |||| ||||  || | || |||||||||||||| ||  |||||| | |||||||||||||||||  ||| |||||||||| |    
T  41608491 agagaaagtgtacttgtacggggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaaggatgtttatgtatcataa 41608590  T
Q  112 ctc 114  Q
    |||    
T  41608591 ctc 41608593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 34340101 - 34340133
Alignment:
Q  77 gtgtattgccacctaagagtgtctatgtatcat 109  Q
    ||||||| |||||||||||||||||||||||||    
T  34340101 gtgtattaccacctaagagtgtctatgtatcat 34340133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 32869780 - 32869678
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||| ||||||||||||| |||    
T  32869780 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcttta 32869681  T
Q  112 ctc 114  Q
    |||    
T  32869680 ctc 32869678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 11427720 - 11427616
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaaga--gtgtctatgtatcat 109  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||  |||||||||||||||||  |||||||||||||||    
T  11427720 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagagggtgtctatgtatcat 11427621  T
Q  110 tactc 114  Q
    |||||    
T  11427620 tactc 11427616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 12 - 111
Target Start/End: Original strand, 22880656 - 22880755
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| ||||||||||||||||||||| |||||| ||| |||||||| ||||||||||||||||| |||||||||||||||||    
T  22880656 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagaattttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 22880755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 31109398 - 31109500
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||| |||||||||| || ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||  |||||||    
T  31109398 agagaaagtgtacttttgcggggtctacgtgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctattaatcatta 31109497  T
Q  112 ctc 114  Q
    |||    
T  31109498 ctc 31109500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 6209463 - 6209565
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||  |||||| |||||||||||||||| ||||||||||| ||  ||||||| |||||||||||||||||| |||||||||||||||||    
T  6209463 agagaaagtgtgctagtgcggggtccacgtgactacgtgacagatttttgtgtgagtgtcaaatagtgtattgccacctaagggtgtctatgtatcatta 6209562  T
Q  112 ctc 114  Q
    |||    
T  6209563 ctc 6209565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 17598656 - 17598554
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| |||||||||| ||||||||||||||||| ||| |||||||   |||||||||||||||| |||||||||||||||||    
T  17598656 agagaaagtgtgcttgtgcggggtccacgtgacaacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcatta 17598557  T
Q  112 ctc 114  Q
    |||    
T  17598556 ctc 17598554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 29857929 - 29857827
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||| ||| ||| |||  ||||||||||| ||||  |||||||||||||||||    
T  29857929 agagaaagtgtgcttatgcgggatccacgtaactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtatcatta 29857830  T
Q  112 ctc 114  Q
    |||    
T  29857829 ctc 29857827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 12 - 111
Target Start/End: Original strand, 23128125 - 23128224
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||| ||| ||||||||  ||||||  ||| |||  |||||||| ||||||||    
T  23128125 agagaaagtgtgcttgtgtgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattatcacataaaggtgtctatatatcatta 23128224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 31976350 - 31976248
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||| | || ||||| ||||||||||||||||| ||| ||| |||| || ||||||||||||||  |||||||||||||| |    
T  31976350 agagaaagtgtgcttgtgcggggttcatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtatattgccacctaaggatgtctatgtatcataa 31976251  T
Q  112 ctc 114  Q
    |||    
T  31976250 ctc 31976248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 12732584 - 12732482
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||| ||||||| || ||||||||| |  | ||||||||||||||||| ||| |||||| || | ||||||||| ||||| ||||||||||||||||    
T  12732584 agagaaaatgtgcttatgtgggatccacatagccacgtgtcagatttttgtgtgggtgtcaatgattatattgccacttaagaatgtctatgtatcatta 12732485  T
Q  112 ctc 114  Q
    |||    
T  12732484 ctc 12732482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 31110759 - 31110859
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| ||| || |||| |||  ||||||||||||||||||  |  |||||||| |||||||||||||||||  |||||||||||||| |    
T  31110759 agagaaagtgtgcttgtgcagggtccatgtggttacgtgtcagatttttgtgag--tgtcaaagggtgtattgccacctaaggatgtctatgtatcataa 31110856  T
Q  112 ctc 114  Q
    |||    
T  31110857 ctc 31110859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 15508022 - 15508124
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||| ||| |||||| ||||  || | || |||||||||||||| ||| |||||| | ||||||||||||||||| |||| |||||||||| |    
T  15508022 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 15508121  T
Q  112 ctc 114  Q
    |||    
T  15508122 ctc 15508124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 114
Target Start/End: Complemental strand, 15832659 - 15832577
Alignment:
Q  32 ggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcattactc 114  Q
    |||||||||||||||||||||| |||||||| ||| |||||||   | ||||| |||||||  ||||||||||||||||||||    
T  15832659 ggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaatgatttattgtcacctaaaggtgtctatgtatcattactc 15832577  T

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Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 15990040 - 15990142
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||| ||| |||||| ||||  || | || |||||||||||||| ||| |||||| | ||||||||||||||||| |||| |||||||||| |    
T  15990040 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 15990139  T
Q  112 ctc 114  Q
    |||    
T  15990140 ctc 15990142  T

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Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 30341358 - 30341460
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||| ||| |||||| ||||  || | || |||||||||||||| ||| |||||| | ||||||||||||||||| |||| |||||||||| |    
T  30341358 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 30341457  T
Q  112 ctc 114  Q
    |||    
T  30341458 ctc 30341460  T

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Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 28536486 - 28536582
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatt 110  Q
    ||||||||||||||| || ||| ||||| ||||  |||||||||||||||| ||| |||||| |  ||||||||||||||||  ||| |||||||||||    
T  28536486 agagaaagtgtgcttgtgtggggtccacatgac--cgtgtcagatttttgtgtgggtgtcaagggttgtattgccacctaaggatgtttatgtatcatt 28536582  T

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Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 946478 - 946377
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||   |||||||  ||||||||| ||||||||||||||  | | |||||||| |||||||  ||||||||  |||||||||||| |||    
T  946478 agagaaagtgtgctagagcgggatttacgtgactaggtgtcagatttttgggtaggtgtcaaagggtgtattatcacctaaggatgtctatgtatcgtta 946379  T
Q  112 ct 113  Q
    ||    
T  946378 ct 946377  T

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Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 31953028 - 31953130
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    |||||||||||| || || | | ||||| |||  || |||||||||||| | ||| |||||| | |||||||||||||||||  ||||||| ||||||||    
T  31953028 agagaaagtgtgtttgtgtgaggtccacatgaacacatgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatctatcatta 31953127  T
Q  112 ctc 114  Q
    |||    
T  31953128 ctc 31953130  T

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Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 4231650 - 4231570
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaa 92  Q
    ||||||||||| ||| |||||| ||||  || | ||||||||||||||||| ||| || ||| | ||||||||||||||||    
T  4231650 agagaaagtgtacttgtgcggggtccatatggccacgtgtcagatttttgtgtgggtggcaaggggtgtattgccacctaa 4231570  T

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Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 9379710 - 9379807
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcat 109  Q
    ||||||| |||| || || | ||||||| || | |||||||| |||||||||||| |||||| |  ||||||| || |||||  ||||||||||||||    
T  9379710 agagaaaatgtgtttgtgtgagatccacatggccacgtgtcaaatttttgtatgggtgtcaagggatgtattgtcatctaaggatgtctatgtatcat 9379807  T

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Target: scaffold1268 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 927 - 1029
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||||| |||||||||||||||||| ||||||| ||||||| |||| ||||||||||||||||   ||||||||||||||||    
T  927 agagaaagtgtgcttgtgcgggattcacgtgactacgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtatcatta 1026  T
Q  112 ctc 114  Q
    |||    
T  1027 ctc 1029  T

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Target: scaffold1267 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 927 - 1029
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||||| |||||||||||||||||| ||||||| ||||||| |||| ||||||||||||||||   ||||||||||||||||    
T  927 agagaaagtgtgcttgtgcgggattcacgtgactacgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtatcatta 1026  T
Q  112 ctc 114  Q
    |||    
T  1027 ctc 1029  T

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Target: scaffold0237 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 4131 - 4029
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||| ||| ||| |||  ||||||||||| ||||  |||||||||||||||||    
T  4131 agagaaagtgtgcttatgcgggatccacgtaactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtatcatta 4032  T
Q  112 ctc 114  Q
    |||    
T  4031 ctc 4029  T

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Target: scaffold0321 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 10107 - 10209
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||||||||||| | || | |||||||||||||||||||||||||| | ||||||||||||  |||||||||||||||  ||||||||||||||| |    
T  10107 agagaaagtgtgcttgtacgcggtccacgtgactacgtgtcagatttttatgtggatgtcaaaggatgtattgccacctaaaggtgtctatgtatcataa 10206  T
Q  112 ctc 114  Q
    |||    
T  10207 ctc 10209  T

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Target: scaffold0110 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 8861 - 8963
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgtctatgtatcatta 111  Q
    ||||||| ||| ||| || ||| |||||||||||| |||||| |||||||| | ||||||||| ||||||||| ||| ||||  ||||||| |||||| |    
T  8861 agagaaaatgtacttgtgtggggtccacgtgactatgtgtcaaatttttgtgtagatgtcaaatagtgtattgtcacttaaggatgtctatatatcataa 8960  T
Q  112 ctc 114  Q
    |||    
T  8961 ctc 8963  T

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Target: scaffold0018 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 152600 - 152514
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtcaaagagtgtattgccacctaagagtgt 98  Q
    |||||||||||  || |||||||||||  |||| || |||||||||||||| ||| |||||| | ||||||||||||| ||| ||||    
T  152600 agagaaagtgtatttgtgcgggatccatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacccaagggtgt 152514  T

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Target: scaffold0316 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 17156 - 17097
Alignment:
Q  12 agagaaagtgtgcttttgcgggatccacgtgactacgtgtcagatttttgtatggatgtc 71  Q
    ||||||| ||||||| |||||| |||| ||||| || |||||||||||||| ||||||||    
T  17156 agagaaaatgtgcttgtgcggggtccatgtgaccacatgtcagatttttgtgtggatgtc 17097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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