View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9432_low_12 (Length: 246)

Name: NF9432_low_12
Description: NF9432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9432_low_12
NF9432_low_12
[»] chr5 (3 HSPs)
chr5 (11-219)||(20055049-20055259)
chr5 (126-172)||(42687670-42687716)
chr5 (11-71)||(20684946-20685006)
[»] chr4 (2 HSPs)
chr4 (1-225)||(17464784-17464994)
chr4 (79-107)||(26493425-26493453)
[»] chr1 (3 HSPs)
chr1 (12-219)||(8236179-8236391)
chr1 (85-127)||(27318609-27318651)
chr1 (126-175)||(12727203-12727252)
[»] chr2 (1 HSPs)
chr2 (85-175)||(35406500-35406592)
[»] chr8 (1 HSPs)
chr8 (85-175)||(9798477-9798569)
[»] chr7 (2 HSPs)
chr7 (85-174)||(6847833-6847924)
chr7 (134-175)||(11242544-11242585)
[»] chr6 (1 HSPs)
chr6 (102-176)||(31817845-31817921)
[»] chr3 (1 HSPs)
chr3 (140-175)||(13833104-13833139)
[»] scaffold0148 (1 HSPs)
scaffold0148 (58-118)||(12567-12625)


Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 11 - 219
Target Start/End: Original strand, 20055049 - 20055259
Alignment:
Q  11 catcttggatcattggaaacttgctttttattgaaataaaaagttacttttgttctaagttcttgttattataattttctgcacttttatattcttgcta 110  Q
    ||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  20055049 catcttggatcattgaaaacttgcttgttattgaaatacaaagttacttttgttctaagttcttgttattctaattttctgcacttttacattcttgcta 20055148  T
Q  111 tttacttttatgttc-ttata-ttccagcactttacattcagtcatttacaattatgcaatttattttctattttaatcttatgtctgctgtgataatga 208  Q
    ||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||    
T  20055149 tttacttttctgttctttacatttccagcactttacattcagtcatttacaattatgcaatttattttctattttaatcttatgtctactatgattatga 20055248  T
Q  209 gtgagtagacc 219  Q
    |||||||||||    
T  20055249 gtgagtagacc 20055259  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 42687716 - 42687670
Alignment:
Q  126 ttatattccagcactttacattcagtcatttacaattatgcaattta 172  Q
    ||||||||||||| |||| |||||  |||||||||||||||||||||    
T  42687716 ttatattccagcaatttatattcaaacatttacaattatgcaattta 42687670  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 20684946 - 20685006
Alignment:
Q  11 catcttggatcattggaaacttgctttttattgaaataaaaagttacttttgttctaagtt 71  Q
    |||||| ||||||| ||||||||| | ||||| || || ||||||||||||| ||||||||    
T  20684946 catcttagatcatttgaaacttgcatattattaaattataaagttacttttgctctaagtt 20685006  T

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Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 17464784 - 17464994
Alignment:
Q  1 acttgtaaaccatcttggatcattggaaacttgctttttattgaaataaaaagttacttttgttctaagttcttgttattataattttctgcacttttat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||     
T  17464784 acttgtaaaccatcttggatcattggaaacttgctttttattgaaatacaaagttacttttgttctaagttcttgttattctaattttctgcaattttac 17464883  T
Q  101 attcttgctatttacttttatgttcttatattccagcactttacattcagtcatttacaattatgcaatttattttctattttaatcttatgtctgctgt 200  Q
    |||||| ||||||| |||| ||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17464884 attcttactatttatttttctgtt--------------ctttacattcagtcatttacaattatgcaatttattttctattttaatcttatgtctactgt 17464969  T
Q  201 gataatgagtgagtagaccgtcttg 225  Q
    |||||||||||||||||||||||||    
T  17464970 gataatgagtgagtagaccgtcttg 17464994  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 107
Target Start/End: Complemental strand, 26493453 - 26493425
Alignment:
Q  79 ttataattttctgcacttttatattcttg 107  Q
    |||||||||||||||||||||||||||||    
T  26493453 ttataattttctgcacttttatattcttg 26493425  T

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Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 8236179 - 8236391
Alignment:
Q  12 atcttggatcattggaaacttgctttttattgaaataaaaagttacttttgttctaagttcttgttattataattttctgcacttttatattcttgctat 111  Q
    ||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  8236179 atcttggatcattggaaacttgcttattattgatatacaaagttacttttgttctaagttcttgttattctaattttctgcacttttacattcttgctat 8236278  T
Q  112 ttacttttatgttctt--atattccagcactttacattcagtcatttacaattatgcaattta---ttttctattttaatcttatgtctgctgtgataat 206  Q
    ||||| || |||||||    |||||||||||||||||| ||||||||||||||||||||||||   ||||||||||||||||||||||| || |||| ||    
T  8236279 ttactcttttgttctttacaattccagcactttacatttagtcatttacaattatgcaatttatatttttctattttaatcttatgtctactatgatcat 8236378  T
Q  207 gagtgagtagacc 219  Q
    |||||||||||||    
T  8236379 gagtgagtagacc 8236391  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 27318609 - 27318651
Alignment:
Q  85 ttttctgcacttttatattcttgctatttacttttatgttctt 127  Q
    ||||||||||||||| ||||||||||||||||||| |||||||    
T  27318609 ttttctgcacttttacattcttgctatttacttttttgttctt 27318651  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 12727252 - 12727203
Alignment:
Q  126 ttatattccagcactttacattcagtcatttacaattatgcaatttattt 175  Q
    |||| ||||| || ||||||||||||||||||||||||| ||||||||||    
T  12727252 ttatcttccaccaatttacattcagtcatttacaattatacaatttattt 12727203  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 175
Target Start/End: Original strand, 35406500 - 35406592
Alignment:
Q  85 ttttctgcacttttatattcttgctatttacttttatgttctt--atattccagcactttacattcagtcatttacaattatgcaatttattt 175  Q
    ||||||||| ||||| |||||||||||||||||||||||||||    |||||| || |||| |||||||||||||||||||||||||| ||||    
T  35406500 ttttctgcatttttacattcttgctatttacttttatgttctttacaattccaacaatttatattcagtcatttacaattatgcaattcattt 35406592  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 175
Target Start/End: Complemental strand, 9798569 - 9798477
Alignment:
Q  85 ttttctgcacttttatattcttgctatttacttttatgttcttat--attccagcactttacattcagtcatttacaattatgcaatttattt 175  Q
    ||||||||||||||| |||||||||||||| |||  |||||||    ||||||||| ||||||||||||||||||||||||  ||||||||||    
T  9798569 ttttctgcacttttacattcttgctatttattttagtgttctttacaattccagcaatttacattcagtcatttacaattaaacaatttattt 9798477  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 174
Target Start/End: Complemental strand, 6847924 - 6847833
Alignment:
Q  85 ttttctgcacttttatattcttgctatttacttttatgttctt--atattccagcactttacattcagtcatttacaattatgcaatttatt 174  Q
    |||||||||||| || ||||||||||||||||||| |||||||    |||||| || ||| |||||| |||||||||| |||||||||||||    
T  6847924 ttttctgcacttgtacattcttgctatttacttttctgttctttacaattccaacaattttcattcaatcatttacaactatgcaatttatt 6847833  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 11242544 - 11242585
Alignment:
Q  134 cagcactttacattcagtcatttacaattatgcaatttattt 175  Q
    ||||| ||||||||||||||||||||||||| ||||||||||    
T  11242544 cagcaatttacattcagtcatttacaattatacaatttattt 11242585  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 31817921 - 31817845
Alignment:
Q  102 ttcttgctatttacttttatgttctt-ata-ttccagcactttacattcagtcatttacaattatgcaatttatttt 176  Q
    |||||||| ||||||||| ||||||| ||| ||||| ||||||| ||||||||||||||  ||||||| ||||||||    
T  31817921 ttcttgctctttacttttctgttctttataattccatcactttatattcagtcatttacttttatgcattttatttt 31817845  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 175
Target Start/End: Complemental strand, 13833139 - 13833104
Alignment:
Q  140 tttacattcagtcatttacaattatgcaatttattt 175  Q
    |||||||||||||||||||||||||| |||||||||    
T  13833139 tttacattcagtcatttacaattatgaaatttattt 13833104  T

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Target: scaffold0148 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 12567 - 12625
Alignment:
Q  58 ttttgttctaagttcttgttattataattttctgcacttttatattcttgctatttacttt 118  Q
    |||||||||||| ||| ||| ||||| ||||||||||||||| ||||||||| ||||||||    
T  12567 ttttgttctaagctctggtt-ttata-ttttctgcacttttacattcttgctctttacttt 12625  T

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