View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9432_low_2 (Length: 488)

Name: NF9432_low_2
Description: NF9432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9432_low_2
NF9432_low_2
[»] chr1 (5 HSPs)
chr1 (89-431)||(30653544-30653886)
chr1 (1-93)||(30654023-30654115)
chr1 (89-431)||(51084996-51085338)
chr1 (271-305)||(20638273-20638307)
chr1 (271-303)||(25596237-25596269)
[»] chr7 (1 HSPs)
chr7 (187-431)||(37369492-37369737)
[»] chr5 (3 HSPs)
chr5 (99-376)||(14858634-14858909)
chr5 (156-305)||(38945080-38945231)
chr5 (274-314)||(8266222-8266262)
[»] chr6 (1 HSPs)
chr6 (271-306)||(21697435-21697470)
[»] chr2 (2 HSPs)
chr2 (271-314)||(218542-218585)
chr2 (340-391)||(36472944-36472995)
[»] chr8 (2 HSPs)
chr8 (271-313)||(18479867-18479909)
chr8 (271-308)||(25750105-25750142)
[»] scaffold0114 (1 HSPs)
scaffold0114 (271-308)||(12941-12978)


Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 89 - 431
Target Start/End: Complemental strand, 30653886 - 30653544
Alignment:
Q  89 ccttcttacattatgagcatatatctcctccctaataaattgattgatggcatagnnnnnnnttataaatgctttttggtggggtcatggtgtaacacga 188  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||       |||||||||||||||||||| |||||||||||||||||    
T  30653886 ccttcttacattatgagcatacatctcctccctaataaattgattgatggcatagaaaaaa-ttataaatgctttttggtggtgtcatggtgtaacacga 30653788  T
Q  189 gaaaaggtatgcactggttgtcttcggaaagattgtttgttcacaaaattttggaggtatgggattcgaggatcttactaactttaatgtggcgatgctt 288  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30653787 gaaaaggtatgcactggttgtcttgggaaagattgtttgttcccaaaattttggaggtatgggattcgaggatcttactaactttaatgtggcgatgctt 30653688  T
Q  289 ggtaaacagggttggaagttttaaacgaacaccaatagccttgatattagattgtttaaagctcattattttcctaacaatgattttataggttc-aaga 387  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||    
T  30653687 ggtaaacagggttggaagttttaaacaaacaccaatagccttgttattagattttttaaagctcattattatcctaacaatgattttataggttctaaga 30653588  T
Q  388 ttgggaattaactagacctatgtgtggaaaagcattttcaccgc 431  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  30653587 ttgggaattaactagacctatgtttggaaaagcattttcaccgc 30653544  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 30654115 - 30654023
Alignment:
Q  1 caatcatgtggaagcatcgcaaagagactccataaccaatactttaggtgcccgtgctgttatgggaacagaaaaatatcttggtctgccttc 93  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||| |||||    
T  30654115 caatcgtgtggaagcatcgcaaagagactccataaccaatactttaggtgtccgtactgttatgggaacaggaaaatatcttggtctcccttc 30654023  T

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Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 89 - 431
Target Start/End: Complemental strand, 51085338 - 51084996
Alignment:
Q  89 ccttcttacattatgagcatatatctcctccctaataaattgattgatggcatagnnnnnnnttataaatgctttttggtggggtcatggtgtaac-acg 187  Q
    ||||||||  ||||||| ||||||||||||||||| |||||||||||||| || |       | |||||| ||||||||||||| ||||| |   | | |    
T  51085338 ccttcttatgttatgagtatatatctcctccctaacaaattgattgatgggattgaaaaa--tgataaatactttttggtgggggcatgggggttcgagg 51085241  T
Q  188 agaaaaggtatgcactggttgtcttcggaaagattgtttgttcacaaaattt-tggaggtatgggattcgaggatcttactaactttaatgtggcgatgc 286  Q
    || ||||||||||| |||||||||| ||| ||||||  |||||| |||| |  ||| |||||||| ||  |||| ||| ||   ||||||||||||||||    
T  51085240 aggaaaggtatgcattggttgtcttgggagagattgactgttcataaaactcgtggtggtatggggtttaaggaccttgcttcttttaatgtggcgatgc 51085141  T
Q  287 ttggtaaacagggttggaagttttaaacgaacaccaatagccttgatattagattgtttaaagctcattattttcctaacaatgattttataggttcaag 386  Q
    ||||||||||||| ||||||||| ||||  |     |||||||||  | |||||| ||||||||||  |||||||| |||||||||||| |||| |||||    
T  51085140 ttggtaaacaggggtggaagtttcaaacagatgttgatagccttgtaactagattatttaaagctcgatattttccgaacaatgattttttagggtcaag 51085041  T
Q  387 attgggaattaactagacctatgtgtggaaaagcattttcaccgc 431  Q
     ||||||| |||    |  |||||||||| ||||||||| |||||    
T  51085040 gttgggaagtaatcctagttatgtgtggagaagcatttttaccgc 51084996  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 305
Target Start/End: Original strand, 20638273 - 20638307
Alignment:
Q  271 tttaatgtggcgatgcttggtaaacagggttggaa 305  Q
    ||||||||||||||||||||||||||||| |||||    
T  20638273 tttaatgtggcgatgcttggtaaacagggatggaa 20638307  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 303
Target Start/End: Complemental strand, 25596269 - 25596237
Alignment:
Q  271 tttaatgtggcgatgcttggtaaacagggttgg 303  Q
    |||||||||||||||||||||||||| ||||||    
T  25596269 tttaatgtggcgatgcttggtaaacaaggttgg 25596237  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 187 - 431
Target Start/End: Complemental strand, 37369737 - 37369492
Alignment:
Q  187 gagaaaaggtatgcactggttgtcttcggaaagattgtttgttcacaaa-attttggaggtatgggattcgaggatcttactaactttaatgtggcgatg 285  Q
    |||||| || |||||  ||||||||| | |||| ||| ||||||||||| ||| |||||||||| ||||  |||| ||| ||   |||| ||||||||||    
T  37369737 gagaaagggcatgcatcggttgtcttggaaaagtttgattgttcacaaatattatggaggtatgagatttaaggaccttgcttcttttattgtggcgatg 37369638  T
Q  286 cttggtaaacagggttggaagttttaaacgaacaccaatagccttgatattagattgtttaaagctcattat-tttcctaacaatgattttataggttca 384  Q
    | |||||||||||| || |||||| ||||| |  ||| |||||||| || ||||||||||||||||  || | ||||| || | ||| ||||||||||||    
T  37369637 cctggtaaacaggggtgaaagtttcaaacggatcccactagccttgttactagattgtttaaagcttgttgtatttccaaatagtga-tttataggttca 37369539  T
Q  385 agattgggaattaactagacctatgtgtggaaaagcattttcaccgc 431  Q
    || ||||||  |||   ||  ||||||||||||||||||||||||||    
T  37369538 aggttgggatgtaatatgagttatgtgtggaaaagcattttcaccgc 37369492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 99 - 376
Target Start/End: Complemental strand, 14858909 - 14858634
Alignment:
Q  99 ttatgagcatatatctcctccctaataaattgattgatggcatagnnnnnnnttataaatgctttttggtggggtcatggtgtaacac-gagaaaaggta 197  Q
    |||||| |||||||||||  ||||||||||| ||||||||||||        | |||||||||||||||||||||||||| |   ||  ||||||||  |    
T  14858909 ttatgatcatatatctccatcctaataaatttattgatggcata-aaaaaaatgataaatgctttttggtggggtcatggcggttcaatgagaaaagaca 14858811  T
Q  198 tgcactggttgtcttcggaaagattgtttgttcacaaaattt-tggaggtatgggattcgaggatcttactaactttaatgtggcgatgcttggtaaaca 296  Q
    ||||||||||||||| ||||| ||||| |  ||  ||| ||| |||||| ||||||| | ||||| |||||  |||||||||||| ||||||| ||||||    
T  14858810 tgcactggttgtctt-ggaaacattgtct--tcttaaattttatggaggaatgggatccaaggatattacttcctttaatgtggcaatgcttgataaaca 14858714  T
Q  297 gggttggaagttttaaacgaacaccaatagccttgatattagattgtttaaagctcattattttcctaacaatgatttta 376  Q
     |||| ||||||| ||||  | |||| |||||||  |  |||| | ||||| |||  ||||||| |||||||||||||||    
T  14858713 aggttagaagtttcaaacagataccactagccttatttctagactatttaaggcttgttatttttctaacaatgatttta 14858634  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 305
Target Start/End: Original strand, 38945080 - 38945231
Alignment:
Q  156 aatgctttttggtggggtcatggtgtaac-acgagaaaaggtatgcactggttgtcttcggaaagattgtttgttcacaa-aattttggaggtatgggat 253  Q
    |||||||| |||||||| |||||||   | || ||||||||| |||| ||| | |||| |||| | || | |||||| || |||| ||| ||||||||||    
T  38945080 aatgctttatggtggggacatggtggctctactagaaaaggtttgcattggctatcttaggaacgtttatctgttcataagaattatggtggtatgggat 38945179  T
Q  254 tcgaggatcttactaactttaatgtggcgatgcttggtaaacagggttggaa 305  Q
    || |||| || ||    ||||||||||||||||||||||||||||| |||||    
T  38945180 tcaaggacctcacatcttttaatgtggcgatgcttggtaaacagggatggaa 38945231  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 8266222 - 8266262
Alignment:
Q  274 aatgtggcgatgcttggtaaacagggttggaagttttaaac 314  Q
    |||||||| ||||||||||||||| ||||||||||| ||||    
T  8266222 aatgtggcaatgcttggtaaacagcgttggaagtttcaaac 8266262  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 306
Target Start/End: Original strand, 21697435 - 21697470
Alignment:
Q  271 tttaatgtggcgatgcttggtaaacagggttggaag 306  Q
    ||||||||||| ||||||||||||||||||||||||    
T  21697435 tttaatgtggcaatgcttggtaaacagggttggaag 21697470  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 314
Target Start/End: Original strand, 218542 - 218585
Alignment:
Q  271 tttaatgtggcgatgcttggtaaacagggttggaagttttaaac 314  Q
    ||||||||||| |||||||| |||||||||||||||||| ||||    
T  218542 tttaatgtggcaatgcttggaaaacagggttggaagtttcaaac 218585  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 391
Target Start/End: Original strand, 36472944 - 36472995
Alignment:
Q  340 ttgtttaaagctcattattttcctaacaatgattttataggttcaagattgg 391  Q
    ||||||||||||| ||||||| |||||| |||||||||||||  ||||||||    
T  36472944 ttgtttaaagctcgttatttttctaacattgattttataggtcaaagattgg 36472995  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 313
Target Start/End: Original strand, 18479867 - 18479909
Alignment:
Q  271 tttaatgtggcgatgcttggtaaacagggttggaagttttaaa 313  Q
    ||||||||||||||||||||||||||||| || || |||||||    
T  18479867 tttaatgtggcgatgcttggtaaacagggatgaaaattttaaa 18479909  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 25750142 - 25750105
Alignment:
Q  271 tttaatgtggcgatgcttggtaaacagggttggaagtt 308  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  25750142 tttaatgtggcaatgcttggtaaacagggttggcagtt 25750105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 12978 - 12941
Alignment:
Q  271 tttaatgtggcgatgcttggtaaacagggttggaagtt 308  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  12978 tttaatgtggcaatgcttggtaaacagggttggcagtt 12941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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