View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9432_low_3 (Length: 452)
Name: NF9432_low_3
Description: NF9432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9432_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 14 - 377
Target Start/End: Complemental strand, 11275740 - 11275373
Alignment:
| Q |
14 |
tactaaatggtgctcaacaaatttatgacacatttgttagagatttgaagatactagtaatagaagcaaactaattcataagttcttttccctgttttga |
113 |
Q |
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| T |
11275740 |
tactaaatggtgctcaacaaatttatgacacatttgttacagatttgaagatactagtaatagaagcaaactaattcataagctcctttccctgttttga |
11275641 |
T |
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| Q |
114 |
ttgacagcttaatatttttctgcacctgaaaaggtattcctttcagaatacttaatctatgtttggcagtcataattgattgttggagtaaaaaattaat |
213 |
Q |
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| T |
11275640 |
ttgacagcttaatatttttctgcacctgaaaaggtattcctttcagaatacttaatctatgtttggcagtcataattgattgttggagtaaaaaattaat |
11275541 |
T |
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| Q |
214 |
tttgacatgttctatcagatagaattaattttacctccaaatttgttgaactaagattgatagct------tttaaacgtaatttttgcattggatttta |
307 |
Q |
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| T |
11275540 |
tttgacatgttctatcgaatagaattaattttatctccagaat--ttaaattaaaatttgtagctttcgagtttaaatggaatttttacattgaatttta |
11275443 |
T |
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| Q |
308 |
ttattcgactcacttttatttacatatattcaaacataaaagctttacctttaattcatttttaagcaat |
377 |
Q |
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| T |
11275442 |
ttattcaactcacttttatttacatatattcaaacataaaagctttaccttcaatttgtttttaagcaat |
11275373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 373 - 435
Target Start/End: Complemental strand, 11275338 - 11275276
Alignment:
| Q |
373 |
gcaatgagagttaaaaaaccacggttattttgaggttgaagaatagttgtgggaggaagtttt |
435 |
Q |
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| T |
11275338 |
gcaatgagagttaaaaaaccatggttgttttgagattgaggaatagttgtgggaggaagtttt |
11275276 |
T |
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