View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9432_low_4 (Length: 392)

Name: NF9432_low_4
Description: NF9432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9432_low_4
NF9432_low_4
[»] chr4 (2 HSPs)
chr4 (18-392)||(17464402-17464776)
chr4 (301-376)||(21276697-21276772)
[»] chr5 (1 HSPs)
chr5 (18-153)||(20054659-20054795)
[»] chr2 (4 HSPs)
chr2 (94-276)||(21516711-21516893)
chr2 (18-111)||(21516916-21517010)
chr2 (18-102)||(21512365-21512450)
chr2 (94-186)||(21512241-21512333)
[»] chr7 (1 HSPs)
chr7 (42-90)||(6530799-6530847)
[»] chr1 (3 HSPs)
chr1 (282-370)||(27318407-27318495)
chr1 (319-384)||(8236089-8236153)
chr1 (40-88)||(3363476-3363524)
[»] chr8 (1 HSPs)
chr8 (282-386)||(9798664-9798768)


Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 17464402 - 17464776
Alignment:
Q  18 agatggtttggtggaagcttaggcaagaaaagatcaagaatgaaggatgaaaaggagcaaaacaagaggaaaaacaagaccgtgcgttttagcatgctgc 117  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  17464402 agatggtttggtggaagcttaggcaagaaaagatcaagaatcaaggatgaaaaggagcaaaacaagaggaaaaaccaaaccgtgcgttttagcatgctgc 17464501  T
Q  118 atgaccaatccgtgcgtataaaaaacgcacgttccaaagaaaagagcacatgaccgtgcgttttagcacaggactgtacgttttggtgtgctgctgggaa 217  Q
    ||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||| |||| | |||||||| |||||||||||||    
T  17464502 atgaccaatccgtgcgtatcaaaaacgcacgttccagaaaaaagagcacatgaccgtgcgttttagcacatgactatgcgttttggcgtgctgctgggaa 17464601  T
Q  218 agggaacgtgcgtgccttgtaatgagaagctgaaaagtgcacgatcgagacttcagaccatgtatttttgctgtccgctgaaactgttacaaaacactta 317  Q
    |||||||||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||||  |||||||| || ||||||||||||||||||| ||||    
T  17464602 agggaacgtgcgtgccctgtaatgtgaagctgaaaagtacacgatctagacttcagaccatgcgtttttgctatcagctgaaactgttacaaaactctta 17464701  T
Q  318 gttttccttgattttaaaggttgtaaattcgtggttaatgccttgtcttgagactttagactataaataagtcct 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17464702 gttttccttgattttaaaggttgtaaattcgtggttaatgccttgtcttgagactttagaccataaataagtcct 17464776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 376
Target Start/End: Original strand, 21276697 - 21276772
Alignment:
Q  301 ctgttacaaaacac-ttagttttccttgattttaaaggttgtaaattcgtggttaatgccttgtcttgagactttag 376  Q
    |||||||||||| | || ||||||||| | ||||||| |||||| |||||| |||||| |||||||||||| |||||    
T  21276697 ctgttacaaaactctttggttttcctt-aatttaaagtttgtaatttcgtgtttaatgtcttgtcttgagattttag 21276772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 20054659 - 20054795
Alignment:
Q  18 agatggtttggtggaagcttaggcaagaaaagatcaagaatgaaggatgaaaaggagcaaaacaagaggaaaaaca-agaccgtgcgttttagcatgctg 116  Q
    |||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |  ||||||||||||||||||     
T  20054659 agatggtttgtttgaagtttaggcaagaaaagatcaagaatgaaggatgaaaaggagcaaaacaagaggaaaagcacggttcgtgcgttttagcatgctt 20054758  T
Q  117 catgaccaatccgtgcgtataaaaaacgcacgttcca 153  Q
    || |||||||||||||||||||||| | |||||||||    
T  20054759 caggaccaatccgtgcgtataaaaagcacacgttcca 20054795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 8e-37; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 94 - 276
Target Start/End: Complemental strand, 21516893 - 21516711
Alignment:
Q  94 agaccgtgcgttttagcatgctgcatgaccaatccgtgcgtataaaaaacgcacgttccaaagaaaagagcacatgaccgtgcgttttagcacaggactg 193  Q
    |||| ||| ||||| || ||||| | |||||||| |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||  |||      
T  21516893 agactgtgtgttttggcgtgctgtaggaccaatctgtgcgtataaaaaacgcacgttccaaagaaaagagcacagtcccgtgcgttttagcaccagacca 21516794  T
Q  194 tacgttttggtgtgctgctgggaaagggaacgtgcgtgccttgtaatgagaagctgaaaagtgcacgatcgagacttcagacc 276  Q
    | |||||||| || |||||| |||||||| | |||||||| ||||  |||||||||||||||||||| ||  |||||||||||    
T  21516793 tgcgttttggcgtactgctgagaaagggaccatgcgtgccctgtatggagaagctgaaaagtgcacggtctggacttcagacc 21516711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 21517010 - 21516916
Alignment:
Q  18 agatggtttggtggaagcttaggcaagaaaagatcaagaatgaaggatgaaaaggagcaaaacaagaggaaaaaca-agaccgtgcgttttagca 111  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||    
T  21517010 agatggtttggtggaagtttaggcaagaaaagataaagaatgaaggatgaaaaggagaaaaacaagatgaaaaacacagaccgtgcgttttagca 21516916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 21512450 - 21512365
Alignment:
Q  18 agatggtttggtggaagcttaggcaagaaaagatcaagaatgaaggatgaaaaggagcaaaacaagaggaaaaaca-agaccgtgc 102  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||    
T  21512450 agatggtttggtggaagtttaggtaagaaaagatcaagaatgaagaatgaaaaggagcaaagcaagaggaaaaacacagaccgtgc 21512365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 94 - 186
Target Start/End: Complemental strand, 21512333 - 21512241
Alignment:
Q  94 agaccgtgcgttttagcatgctgcatgaccaatccgtgcgtataaaaaacgcacgttccaaagaaaagagcacatgaccgtgcgttttagcac 186  Q
    |||| |||||||||||| ||||||| ||||||||||  ||||| |||||| ||||||||||||||||||||||    ||||||||||||||||    
T  21512333 agactgtgcgttttagcgtgctgcaggaccaatccgcacgtatcaaaaacacacgttccaaagaaaagagcacggtcccgtgcgttttagcac 21512241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 6530799 - 6530847
Alignment:
Q  42 aagaaaagatcaagaatgaaggatgaaaaggagcaaaacaagaggaaaa 90  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  6530799 aagaaaggatcaagaatgaaggctgaaaaggagcaaaacaagaggaaaa 6530847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 370
Target Start/End: Original strand, 27318407 - 27318495
Alignment:
Q  282 tttttgctgtccgctgaaactgttacaaaacacttag-ttttccttgattttaaaggttgtaaattcgtggttaatgccttgtcttgaga 370  Q
    ||||||||||| |||| | |||||||||||| ||| | |||||| | ||||||||| ||||||||||| | |||||||||||||||||||    
T  27318407 tttttgctgtcagctggagctgttacaaaactctttggttttccct-attttaaagcttgtaaattcgagtttaatgccttgtcttgaga 27318495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 384
Target Start/End: Original strand, 8236089 - 8236153
Alignment:
Q  319 ttttccttgattttaaaggttgtaaattcgtggttaatgccttgtcttgagactttagactataaa 384  Q
    ||||||||||||| |||| |||||| |||||| ||||||||||||||||||  ||||| |||||||    
T  8236089 ttttccttgattt-aaagattgtaatttcgtgtttaatgccttgtcttgaggttttaggctataaa 8236153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 3363524 - 3363476
Alignment:
Q  40 gcaagaaaagatcaagaatgaaggatgaaaaggagcaaaacaagaggaa 88  Q
    |||||||| ||||| |||||||||| |||||||||||||||| ||||||    
T  3363524 gcaagaaaggatcaggaatgaaggaagaaaaggagcaaaacatgaggaa 3363476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 386
Target Start/End: Complemental strand, 9798768 - 9798664
Alignment:
Q  282 tttttgctgtccgctgaaactgttacaaaacacttagttttccttgattttaaaggttgtaaattcgtggttaatgccttgtcttgagactttagactat 381  Q
    ||||||||||| |||  | |||||||||||| ||| | ||||    ||||||||| ||||||||||| | |||||||||||||| |||  | ||| ||||    
T  9798768 tttttgctgtcagctagagctgttacaaaactctttggtttctcctattttaaagcttgtaaattcgagtttaatgccttgtctagaggttctaggctat 9798669  T
Q  382 aaata 386  Q
    |||||    
T  9798668 aaata 9798664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University