View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9432_low_6 (Length: 343)
Name: NF9432_low_6
Description: NF9432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9432_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 42466953 - 42467276
Alignment:
| Q |
18 |
aagtgaaggatttcgattctctttccaaggaaatggatattggttattggtgtacgtgatgaatgtgggaggtggaggtgatatagcaaacatgtgggtt |
117 |
Q |
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| T |
42466953 |
aagtgaaggatttcgattctctttccaaggaaatggatattggttattggtgtacgtgatgaatgtgggaggtggaggtgatatagcaaacatgtgggtt |
42467052 |
T |
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| Q |
118 |
aaaggaagtagaacaggatggattagcatgagccacaattggggtgcttcttaccaagcatttgcaacacttagtggccaaactctttctttcaagatta |
217 |
Q |
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| T |
42467053 |
aaaggaagtagaacaggatggattagcatgagccacaattggggtgcttcttaccaagcatttgcaacacttagtggccaaactctttctttcaagatta |
42467152 |
T |
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| Q |
218 |
cttcttacacaaccaaagaaactataatagcttggaatgttgctccttccaactggggtgctggaataacctattccacacatgtcaattttcattgaag |
317 |
Q |
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| T |
42467153 |
cttcttacacaaccaaagaaactataatagcttggaatgttgctccttccaactggggtgctggactaacctattccacacatgtcaattttcattgaag |
42467252 |
T |
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| Q |
318 |
tatgttgccatctgtgctcctcct |
341 |
Q |
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| T |
42467253 |
tatgttgccatcagtgctcatcct |
42467276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 29 - 269
Target Start/End: Complemental strand, 3183751 - 3183511
Alignment:
| Q |
29 |
ttcgattctctttccaaggaaatggatattggttattggtgtacgtgatgaatgtgggaggtggaggtgatatagcaaacatgtgggttaaaggaagtag |
128 |
Q |
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| T |
3183751 |
ttcgattttctttccaaggaaacgggtactggctattggtgtatgtgatgaacgtcggaggtggaggagatatgtcgagcatgatggtgaaaggaagcag |
3183652 |
T |
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| Q |
129 |
aacaggatggattagcatgagccacaattggggtgcttcttaccaagcatttgcaacacttagtggccaaactctttctttcaagattacttcttacaca |
228 |
Q |
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|||||||||||||| |||||||| || ||||||||||| |||||||||||||||||||| |||| ||| |||||||||||| | ||||||| ||||| |
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| T |
3183651 |
aacaggatggattaagatgagccataactggggtgcttcctaccaagcatttgcaacactaggtggtcaagctctttctttcaggcttacttcatacacc |
3183552 |
T |
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| Q |
229 |
accaaagaaactataatagcttggaatgttgctccttccaa |
269 |
Q |
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|| || || ||||| || || |||||||||||||||||||| |
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| T |
3183551 |
actaaggagactattattgcatggaatgttgctccttccaa |
3183511 |
T |
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