View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9432_low_8 (Length: 339)
Name: NF9432_low_8
Description: NF9432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9432_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 329
Target Start/End: Original strand, 38868339 - 38868651
Alignment:
| Q |
16 |
atatagactttcctctcaaagacattcctacagtcttccaaagtacttttgattatggtaaaagcatataactgttctaatttgtgaacatcttcctcga |
115 |
Q |
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| T |
38868339 |
atatagactttcctctcaaagacattcctatagtcttccaaagtacttttgattatggtaaaagcatataactgttctaatttgtgaacatcttcctcga |
38868438 |
T |
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| Q |
116 |
aactgatcatggtatagtcctcttcaactgtacaccaagacaaatccagcaacctcgatttgtttagctttccaatctgagtaattgtcattcaattccc |
215 |
Q |
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| T |
38868439 |
aactgatcatggtatagtcctcttcaactgtacaccaagacaaatccagcaacctcgatttgtttagctttccaatc-gagtaattgtcattcaattccc |
38868537 |
T |
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| Q |
216 |
atcaatcaaacgtagaattctgagctggccctcattctttgagtctcaataatcagttagtagtaaaatggataaatctcatgttctggaccatccaatt |
315 |
Q |
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| T |
38868538 |
atcaatcaaacgtagaattctgagctggccctcattctttgagtctcaataatcagttagtagtaaaatggataaatctcatgttctggaccatccaatt |
38868637 |
T |
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| Q |
316 |
ttataggaagtatt |
329 |
Q |
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| T |
38868638 |
ttataggaagtatt |
38868651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 115 - 186
Target Start/End: Complemental strand, 38806821 - 38806751
Alignment:
| Q |
115 |
aaactgatcatggtatagtcctcttcaactgtacaccaagacaaatccagcaacctcgatttgtttagcttt |
186 |
Q |
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| T |
38806821 |
aaactgatcatggta-agtcctcttcgattgtacaccgagacaaatccagaaacctcaatttgtttagcttt |
38806751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 38849438 - 38849502
Alignment:
| Q |
122 |
tcatggtatagtcctcttcaactgtacaccaagacaaatccagcaacctcgatttgtttagcttt |
186 |
Q |
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| T |
38849438 |
tcatggtattgtcctcttcaactatacactaagacaaatccaacaacctgaatttgtttagcttt |
38849502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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