View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9433_high_1 (Length: 353)

Name: NF9433_high_1
Description: NF9433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9433_high_1
NF9433_high_1
[»] chr6 (3 HSPs)
chr6 (60-341)||(23905505-23905784)
chr6 (72-157)||(18603361-18603446)
chr6 (14-47)||(23905826-23905859)
[»] chr1 (6 HSPs)
chr1 (72-159)||(26645942-26646029)
chr1 (73-149)||(12085480-12085556)
chr1 (72-114)||(26330497-26330539)
chr1 (75-164)||(25427606-25427695)
chr1 (93-149)||(17622001-17622057)
chr1 (199-263)||(26330623-26330687)
[»] chr2 (1 HSPs)
chr2 (80-149)||(19993855-19993924)
[»] chr3 (2 HSPs)
chr3 (72-164)||(21806626-21806718)
chr3 (172-263)||(15487580-15487670)
[»] chr5 (1 HSPs)
chr5 (86-149)||(33699862-33699925)
[»] chr7 (3 HSPs)
chr7 (72-156)||(15963211-15963296)
chr7 (64-161)||(27223374-27223471)
chr7 (102-161)||(11728477-11728536)
[»] chr8 (3 HSPs)
chr8 (87-149)||(260599-260661)
chr8 (87-149)||(655260-655322)
chr8 (87-149)||(840995-841057)
[»] chr4 (1 HSPs)
chr4 (72-162)||(8321564-8321653)
[»] scaffold0008 (1 HSPs)
scaffold0008 (101-154)||(264271-264324)


Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 60 - 341
Target Start/End: Complemental strand, 23905784 - 23905505
Alignment:
Q  60 acccgaccgtaaaagttttggacaatctcttcagactttaactaccacacaatccgtctttataccttaaagaggattagtgaagctttagaactgatta 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23905784 acccgaccgtaaaagttttggacaatctcttcagactttaactaccacacaatccgtctttataccttaaagaggattagtgaagctttagaactgatta 23905685  T
Q  160 cataannnnnnngtgatcttgctcttaacatttgatcaatttgatctcacaataacctttatctctttctctctaagttaaaattgatcacacaaaggtg 259  Q
    |||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23905684 cataatttttttgtgatcttgctcttaacatttgatcaatttgatctcacaataacctttatctctttctctctaagttaaaattgatcacacaaaggtg 23905585  T
Q  260 aatcggaacannnnnnnnnatcaaagttcaatctgaacactcaaaggtgaatctgaacttttcaaatatcatgtaaaagatg 341  Q
    |||| |||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23905584 aatctgaaca--tttttttatcaaagttcaatctgaacactcaaaggtgaatctgaacttttcaaatatcatgtaaaagatg 23905505  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 157
Target Start/End: Original strand, 18603361 - 18603446
Alignment:
Q  72 aagttttggacaatctcttcagactttaactaccacacaatccgtctttataccttaaagaggattagtgaagctttagaactgat 157  Q
    |||| |||||||| || |||| |||||  ||||| ||||||||  ||||| ||| |||||||||||||||||| |||| |||||||    
T  18603361 aagtattggacaacctattcaaactttggctaccccacaatccaactttacaccctaaagaggattagtgaagttttacaactgat 18603446  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 23905859 - 23905826
Alignment:
Q  14 agactatgatatttttcaatatggtgtttgagat 47  Q
    ||||||||||||||||||||||||||||||||||    
T  23905859 agactatgatatttttcaatatggtgtttgagat 23905826  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 159
Target Start/End: Complemental strand, 26646029 - 26645942
Alignment:
Q  72 aagttttggacaatctcttcagactttaactaccacacaatccgtctttataccttaaagaggattagtgaagctttagaactgatta 159  Q
    ||||||| ||||  |||||||||||||||||||||||||||||  ||||||| || ||||| |||||||||||||||| || ||||||    
T  26646029 aagttttagacatgctcttcagactttaactaccacacaatccacctttataactcaaagaagattagtgaagctttacaattgatta 26645942  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 73 - 149
Target Start/End: Original strand, 12085480 - 12085556
Alignment:
Q  73 agttttggacaatctcttcagactttaactaccacacaatccgtctttataccttaaagaggattagtgaagcttta 149  Q
    ||||||||||||  |||||||| |||||||||||||||||    |||||||||||||| | |||||||||| |||||    
T  12085480 agttttggacaacatcttcagagtttaactaccacacaattaacctttataccttaaatatgattagtgaaacttta 12085556  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 26330497 - 26330539
Alignment:
Q  72 aagttttggacaatctcttcagactttaactaccacacaatcc 114  Q
    ||||||||||||| |||||||||||||||| ||||||||||||    
T  26330497 aagttttggacaacctcttcagactttaacaaccacacaatcc 26330539  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 164
Target Start/End: Original strand, 25427606 - 25427695
Alignment:
Q  75 ttttggacaatctcttcagactttaa-ctaccacacaatccgtctttataccttaaagaggattagtgaagctttagaactgattacataa 164  Q
    |||| |||| ||||||| |||||||| ||||||||||||||  ||||||| |  |||||||| || |||||||||| || |||||||||||    
T  25427606 ttttagacagtctcttcggactttaagctaccacacaatcctcctttataacc-aaagaggaataatgaagctttacaattgattacataa 25427695  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 17622057 - 17622001
Alignment:
Q  93 gactttaactaccacacaatccgtctttataccttaaagaggattagtgaagcttta 149  Q
    |||||||  |||||||||||||  ||||||| | ||||||||||| |||||||||||    
T  17622057 gactttagttaccacacaatccacctttatagcataaagaggattggtgaagcttta 17622001  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 26330623 - 26330687
Alignment:
Q  199 tttgatctcacaataacctttatctctttctctctaagttaaaattgatcacacaaaggtgaatc 263  Q
    ||||||| |||||| || ||| |||||||||||||||||| ||   |||||||| ||||||||||    
T  26330623 tttgatcccacaatcacatttctctctttctctctaagttgaatcagatcacactaaggtgaatc 26330687  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 19993855 - 19993924
Alignment:
Q  80 gacaatctcttcagactttaactaccacacaatccgtctttataccttaaagaggattagtgaagcttta 149  Q
    ||||| ||||||||| |||| ||||||||||||||  ||| ||||| |||||||||||||||||||||||    
T  19993855 gacaacctcttcagattttagctaccacacaatccaccttaataccctaaagaggattagtgaagcttta 19993924  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 164
Target Start/End: Complemental strand, 21806718 - 21806626
Alignment:
Q  72 aagttttggacaatctcttcagactttaactaccacacaatccgtctttataccttaaagaggattagtgaagctttagaactgattacataa 164  Q
    |||||||||||| |||||||| |||||| ||||||||| ||||  ||||||||| |||||| ||||| | |||||||| || ||| |||||||    
T  21806718 aagttttggacagtctcttcaaactttagctaccacacgatccacctttataccctaaagaagattactaaagctttacaattgaatacataa 21806626  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 263
Target Start/End: Complemental strand, 15487670 - 15487580
Alignment:
Q  172 gtgatcttgctcttaacatttgatcaatttgatctcacaataacctttatctctttctctctaagttaaaattgatcacacaaaggtgaatc 263  Q
    ||||||||| |||||||| | |||||||||||||||||||| || ||| ||| ||||| |||||||| || ||||||||  |||||||||||    
T  15487670 gtgatcttgatcttaacaat-gatcaatttgatctcacaatgacatttttctatttctttctaagttcaacttgatcactaaaaggtgaatc 15487580  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 149
Target Start/End: Original strand, 33699862 - 33699925
Alignment:
Q  86 ctcttcagactttaactaccacacaatccgtctttataccttaaagaggattagtgaagcttta 149  Q
    |||||||||||||| || | |||||||||  ||||||||| |||||||||||||||||||||||    
T  33699862 ctcttcagactttagctgctacacaatccacctttataccctaaagaggattagtgaagcttta 33699925  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 156
Target Start/End: Original strand, 15963211 - 15963296
Alignment:
Q  72 aagttttggacaatctcttcagactttaa-ctaccacacaatccgtctttataccttaaagaggattagtgaagctttagaactga 156  Q
    ||||||||||||  ||||||||| ||  | |||||||||||||| |||||||||| |||| |||||||||||||| ||| ||||||    
T  15963211 aagttttggacagcctcttcagatttggagctaccacacaatccatctttataccctaaaaaggattagtgaagccttacaactga 15963296  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 161
Target Start/End: Complemental strand, 27223471 - 27223374
Alignment:
Q  64 gaccgtaaaagttttggacaatctcttcagactttaactaccacacaatccgtctttataccttaaagaggattagtgaagctttagaactgattaca 161  Q
    ||||||| ||||||| ||||| ||||| ||||||||  |||||||||||||  ||||||| | |||| | |||||||||||||||  |||||| ||||    
T  27223471 gaccgtacaagttttagacaacctctttagactttagataccacacaatccacctttatagcgtaaataagattagtgaagctttgcaactgaataca 27223374  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 11728477 - 11728536
Alignment:
Q  102 taccacacaatccgtctttataccttaaagaggattagtgaagctttagaactgattaca 161  Q
    |||||||||||||  ||||||| | |||||||||||| |||||||||| ||||| |||||    
T  11728477 taccacacaatccacctttatatcctaaagaggattaatgaagctttacaactgtttaca 11728536  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 149
Target Start/End: Complemental strand, 260661 - 260599
Alignment:
Q  87 tcttcagactttaactaccacacaatccgtctttataccttaaagaggattagtgaagcttta 149  Q
    |||||| |||||| |||||||| |||||  ||||||||| ||||||| |||||||||||||||    
T  260661 tcttcatactttagctaccacataatccacctttataccataaagagaattagtgaagcttta 260599  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 149
Target Start/End: Original strand, 655260 - 655322
Alignment:
Q  87 tcttcagactttaactaccacacaatccgtctttataccttaaagaggattagtgaagcttta 149  Q
    |||||| |||||| |||||||| |||||  ||||||||| ||||||| |||||||||||||||    
T  655260 tcttcatactttagctaccacataatccacctttataccataaagagaattagtgaagcttta 655322  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 149
Target Start/End: Original strand, 840995 - 841057
Alignment:
Q  87 tcttcagactttaactaccacacaatccgtctttataccttaaagaggattagtgaagcttta 149  Q
    |||||| |||||| |||||||| |||||  ||||||||| ||||||| |||||||||||||||    
T  840995 tcttcatactttagctaccacataatccacctttataccataaagagaattagtgaagcttta 841057  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 162
Target Start/End: Original strand, 8321564 - 8321653
Alignment:
Q  72 aagttttggacaatctcttcagactttaactaccacacaatccgtctttataccttaaagaggattagtgaagctttagaactgattacat 162  Q
    ||||||||||||| ||||| |||||||| ||| || |||||||  ||||||||| ||||||  |||| |||| ||||| |||| |||||||    
T  8321564 aagttttggacaacctctttagactttagctatcatacaatccacctttatacc-taaagataattaatgaaactttacaactcattacat 8321653  T

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Target: scaffold0008 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 264271 - 264324
Alignment:
Q  101 ctaccacacaatccgtctttataccttaaagaggattagtgaagctttagaact 154  Q
    |||||||||||||||  |||||| | |||||||||||||||||| |||| ||||    
T  264271 ctaccacacaatccgcatttataacctaaagaggattagtgaagttttacaact 264324  T

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