View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9433_high_2 (Length: 243)

Name: NF9433_high_2
Description: NF9433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9433_high_2
NF9433_high_2
[»] chr5 (1 HSPs)
chr5 (17-236)||(37975098-37975319)
[»] chr4 (2 HSPs)
chr4 (123-207)||(19121678-19121763)
chr4 (123-183)||(27843827-27843888)
[»] chr7 (2 HSPs)
chr7 (135-210)||(21255443-21255518)
chr7 (155-203)||(25592662-25592710)
[»] chr3 (1 HSPs)
chr3 (123-184)||(31294872-31294934)
[»] scaffold0370 (2 HSPs)
scaffold0370 (138-187)||(8913-8962)
scaffold0370 (138-187)||(14203-14252)
[»] chr2 (1 HSPs)
chr2 (123-198)||(8821706-8821781)


Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 37975319 - 37975098
Alignment:
Q  17 acttctacagtagagtgttaagtacggtggtttttgggtttaaactacactaagaaatgcttacataaaacataaatgtaagcgataannnnnnnnnnnn 116  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||                
T  37975319 acttctacaatagagtgttaagtacggtggtttttgggtttaaactacactaagaaatgcataaataaaacataaatgtaagcgataatttttttttttt 37975220  T
Q  117 nnnn--gcaaaataagcttgttgattgattgaatatgttaattagaatgtctgaacaaaatatttatagtgtaattattgtctagtagccaaacaatatt 214  Q
          || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37975219 ttttttgcgaaataagcttgttgattgattgaatatgttaattagaatgtctgaacaaaatatttatagtgtaattattgtctagtagccaaacaatatt 37975120  T
Q  215 gcctatatgcttaaacctccat 236  Q
    ||||||||||||||||||||||    
T  37975119 gcctatatgcttaaacctccat 37975098  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 19121678 - 19121763
Alignment:
Q  123 aaaataagcttgtt-gattgattgaatatgttaattagaatgtctgaacaaaatatttatagtgtaattattgtctagtagccaaa 207  Q
    |||||||||||||| ||||||||| |||||||||||| ||||| || |||||||||||||||||| ||||||  ||| ||||||||    
T  19121678 aaaataagcttgtttgattgattggatatgttaattacaatgtatgcacaaaatatttatagtgtcattatttcctattagccaaa 19121763  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 27843888 - 27843827
Alignment:
Q  123 aaaataagcttgtt-gattgattgaatatgttaattagaatgtctgaacaaaatatttatag 183  Q
    ||||||| |||||| |||||||||||| ||||||||| ||||| |||||| | |||||||||    
T  27843888 aaaataaacttgtttgattgattgaatgtgttaattacaatgtatgaacatagtatttatag 27843827  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 21255518 - 21255443
Alignment:
Q  135 ttgattgattgaatatgttaattagaatgtctgaacaaaatatttatagtgtaattattgtctagtagccaaacaa 210  Q
    |||||||||||| |  |||||||| ||||| |||| | |||||||||| ||||| ||||||||| ||| |||||||    
T  21255518 ttgattgattgagtgcgttaattacaatgtatgaatataatatttataatgtaactattgtctattagacaaacaa 21255443  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 25592710 - 25592662
Alignment:
Q  155 attagaatgtctgaacaaaatatttatagtgtaattattgtctagtagc 203  Q
    |||| ||||| |||||||| |||||||||||||| ||||||||| ||||    
T  25592710 attacaatgtatgaacaaagtatttatagtgtaactattgtctactagc 25592662  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 31294934 - 31294872
Alignment:
Q  123 aaaataagcttgtt-gattgattgaatatgttaattagaatgtctgaacaaaatatttatagt 184  Q
    |||||||||||||| ||||||||| || ||||| ||| ||||| |||| ||||||||||||||    
T  31294934 aaaataagcttgtttgattgattgtatgtgttatttaaaatgtatgaataaaatatttatagt 31294872  T

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Target: scaffold0370 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0370
Description:

Target: scaffold0370; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 8913 - 8962
Alignment:
Q  138 attgattgaatatgttaattagaatgtctgaacaaaatatttatagtgta 187  Q
    |||||||| || ||||||||| ||||| |||||||| |||||||||||||    
T  8913 attgattggatgtgttaattacaatgtatgaacaaactatttatagtgta 8962  T

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Target: scaffold0370; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 14203 - 14252
Alignment:
Q  138 attgattgaatatgttaattagaatgtctgaacaaaatatttatagtgta 187  Q
    |||||||| || ||||||||| ||||| |||||||| |||||||||||||    
T  14203 attgattggatgtgttaattacaatgtatgaacaaactatttatagtgta 14252  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 8821706 - 8821781
Alignment:
Q  123 aaaataagcttgtt-gattgattgaatatgttaattagaatgtctgaacaaaatatttatagtgtaattattgtcta 198  Q
    |||||||||||||| ||||||||| || ||| ||||| ||| | | |||| |||||||||||||||| |||||||||    
T  8821706 aaaataagcttgtttgattgattggatgtgtaaattacaat-tatcaacataatatttatagtgtaactattgtcta 8821781  T

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