View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9433_low_3 (Length: 320)
Name: NF9433_low_3
Description: NF9433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9433_low_3 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 99; Significance: 7e-49; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 37742742 - 37742880
Alignment:
| Q |
1 |
ctaaattgattggcaatactggactttgatcactttaataatgttatcgttttatttcgtgataaatgaacttatatgataattatgc-nnnnnnnnatt |
99 |
Q |
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| T |
37742742 |
ctaaattgattggcaatactggactttgatcactttaataatgttatcgttttatttcgtgataaatgaacttatatgataatcatgctttttttttgtt |
37742841 |
T |
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| Q |
100 |
gaagaagtccatcaaataaatgtaaaatctaaaggatgt |
138 |
Q |
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| T |
37742842 |
gaagaagtccatcaaataaatgtaaaatctaaaggatgt |
37742880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 193 - 301
Target Start/End: Original strand, 37742884 - 37743000
Alignment:
| Q |
193 |
gtattatccgtcaattata----gatataaaaaatgattacatattaaattgtttgtcaataacatgatctaaaatgttatttgtcatgacga----aac |
284 |
Q |
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| T |
37742884 |
gtattatccgtcaattatatatagatatagaaaatgattacatattaaattgtttggcaataacaagatctaaaatgttatttgtcatgacgatctgaac |
37742983 |
T |
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| Q |
285 |
taaaatgcgagattgtt |
301 |
Q |
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| T |
37742984 |
taaaatgcgagattgtt |
37743000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 37751974 - 37751909
Alignment:
| Q |
3 |
aaattgattggcaatactggactttgatcactttaataatgttatcgttttatttcgtgataaatg |
68 |
Q |
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| T |
37751974 |
aaattgattggcaccactggactttgatcactttaatagtgttatcgttttatttcatgataaatg |
37751909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 139
Target Start/End: Complemental strand, 29554510 - 29554478
Alignment:
| Q |
107 |
tccatcaaataaatgtaaaatctaaaggatgtt |
139 |
Q |
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| T |
29554510 |
tccatcaaataaatgtaaaatctaaacgatgtt |
29554478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 37749812 - 37749840
Alignment:
| Q |
1 |
ctaaattgattggcaatactggactttga |
29 |
Q |
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| T |
37749812 |
ctaaattgattggcaatactggactttga |
37749840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 100 - 201
Target Start/End: Complemental strand, 34482518 - 34482415
Alignment:
| Q |
100 |
gaagaagtccatcaaataaatgtaaaatctaaaggatgttatgctgtcaagtcac--ttgcgatcaggttcacgaatatttgtttgctgtgtttagtatt |
197 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||| |||||||| | |||| ||| |||||||||||| || | ||||||||||||| |
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| T |
34482518 |
gaagcagtccatcaaataaatgtgaaatctaaaggatgttatgctggcaagtcacattcgcgagcagcttcacgaatattacttcgatgtgtttagtatt |
34482419 |
T |
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| Q |
198 |
atcc |
201 |
Q |
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|||| |
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| T |
34482418 |
atcc |
34482415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 90019 - 89930
Alignment:
| Q |
110 |
atcaaataaatgtaaaatctaaaggatgttatgctgtcaagtcacttgcgatcaggttcacgaatatttgtttgctgtgtttagtattat |
199 |
Q |
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| T |
90019 |
atcaaataaatgtaaaatctaaggtatgttatgctaccaacacatttgctaccaggttcacgaatatgtgttcgttgtgtctagcattat |
89930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 41249152 - 41249188
Alignment:
| Q |
109 |
catcaaataaatgtaaaatctaaaggatgttatgctg |
145 |
Q |
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| T |
41249152 |
catcaaataaatgtaaaatctaagggatgttatgctg |
41249188 |
T |
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