View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9433_low_7 (Length: 227)
Name: NF9433_low_7
Description: NF9433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9433_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 26440079 - 26439887
Alignment:
| Q |
20 |
cactcgttaacatttcccattttttaatagtgcaatccctatgttccttgttataagcaaatgttcgttcagcaattgcttatacattccatagccatca |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26440079 |
cactcgttaacatttcccattttttaatagtacattccatatgttccttgttataagcaaatgttcgttcagcaattgcttatacattccatagccatca |
26439980 |
T |
|
| Q |
120 |
ttttttgttacaacttcgaaaaccagagtataagaaaagctctaaagtttgttctataaaatattattttacgtacatatggggtggtttgtg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26439979 |
ttttttgttacaacttcgaaaaccagagtataagaaaagctctaaagtttgttctataaaatattattttacgtacatatggggtggtttgtg |
26439887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 190
Target Start/End: Complemental strand, 26452275 - 26452170
Alignment:
| Q |
86 |
gttcagcaattgcttatacattccatagccatcattttt-tgttacaacttcgaaaaccagagtataagaaaagctctaaagtttgttctataaaatatt |
184 |
Q |
| |
|
||||| ||||||| ||||||||||||||| ||| ||||| | |||||||||| ||||| | ||||| ||||||||||| ||||||||| | ||||||||| |
|
|
| T |
26452275 |
gttcatcaattgcatatacattccatagcaatcttttttgtattacaacttctaaaactaaagtatgagaaaagctctgaagtttgttttgtaaaatatt |
26452176 |
T |
|
| Q |
185 |
atttta |
190 |
Q |
| |
|
||||| |
|
|
| T |
26452175 |
ttttta |
26452170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University